FvH4_6g36690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000274
Physical Location & Seq
Reverse (-)
28884046 .. 28885889
1844 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36690.t1

Sequence Viewer

Length: 849 bp
ATGACTCAGAAGGCGGTTTGGACAACTTCCAAAGCATTCAAGTGCATGGATCCATTGACAAAGAAAAAATGGACAACTTGCTGGGAAAGCTTAGATGACGGCTTAATCCTTTCCTACAGAGACTTCATATGGGAAGGCCCATTGTATGGTTCAGAGATTACAAAGCTTGATCTGCTGGAGGTTATAATGGACAACGCAGTGGCATGCAATCACTCAACAGAACATCTTCATGGAAGGAACATGCACCACTACTTCCTTGACAAGTTATATGACTACTTGGGAGAAGCGACGATGATTTTCTTTCCAATGACAAGTGAAGTAAGGTTTCACCATACACTCCTTGTCTTCCAAGTTCAACCCCCCCATTTCTACCACCTAGATTCAATGAAGGGAAGATCAACAGATGGGAATAGGGGACAGACATGGAAAGATGCCAAAAAAATGGCAACTATGGTTGAGTTATGGATGTCTGCAGTCAAAGAACAAGCAGATGACATGCTGAAGAAAGGCTCCCGCAGAAAAATGGACATGAACAGGAGCAGTTCAGAGAAGCTTGTAATGAAAAAAGTAAAGCTTACGGAGAGAGAGAGAAAGTCCATACAATGGGTCAAGAATAACTATATTGAAAACATCCCAATCAGTTGTCAAATAAATGGACCACTACCTCAGCAACATCCCACATCATTGGATTGTGGGATATTCGTTATGTACTATATGGACAAACTTTCCAAGGAGAAAACGTTTGACAGAACACTGAAGAAGAATGATGTTTTGAAGCTTAGAGCAGAAGTGGTGAAGAGGTTTCTTAACCATAGGCATAGTTGGTACTCAATACGTCATCCGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

33.33

Weight (kDa)

9.31

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 185
AccB7I CCANNNNNTGG 2 cut(s) 146, 603
AciI CCGC 3 cut(s) 14, 514, 842
AclI AACGTT 1 cut(s) 740
AclWI GGATC 2 cut(s) 44, 57
AcuI CTGAAG 2 cut(s) 521, 776
AfaI GTAC 2 cut(s) 710, 827
AfiI CCNNNNNNNGG 2 cut(s) 146, 603
AgsI TTSAA 5 cut(s) 40, 356, 384, 626, 775
AluBI AGCT 5 cut(s) 90, 166, 553, 574, 778
AluI AGCT 5 cut(s) 90, 166, 553, 574, 778
Alw26I GTCTC 1 cut(s) 114
AlwI GGATC 2 cut(s) 44, 57
AoxI GGCC 1 cut(s) 136
Asp700I GAANNNNTTC 1 cut(s) 225
AspS9I GGNCC 2 cut(s) 137, 656
AsuHPI GGTGA 2 cut(s) 320, 805
AvaII GGWCC 1 cut(s) 656
BamHI GGATCC 1 cut(s) 49
BbsI GAAGAC 1 cut(s) 337
BbvCI CCTCAGC 1 cut(s) 666
BccI CCATC 1 cut(s) 398
BceAI ACGGC 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 1 cut(s) 377
BfmI CTRYAG 2 cut(s) 115, 471
Bme18I GGWCC 1 cut(s) 656
BmgT120I GGNCC 2 cut(s) 137, 656
BmiI GGNNCC 2 cut(s) 51, 511
BmsI GCATC 1 cut(s) 421
BpiI GAAGAC 1 cut(s) 337
BpmI CTGGAG 1 cut(s) 197
Bpu10I CCTNAGC 1 cut(s) 666
BsaJI CCNNGG 1 cut(s) 729
BsaXI ACNNNNNCTCC 2 cut(s) 725, 755
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 603
BseDI CCNNGG 1 cut(s) 729
BseGI GGATG 4 cut(s) 471, 630, 673, 838
BseLI CCNNNNNNNGG 2 cut(s) 146, 603
BseMII CTCAG 2 cut(s) 20, 680
BseYI CCCAGC 1 cut(s) 81
BshFI GGCC 1 cut(s) 138
BslFI GGGAC 1 cut(s) 429
BslI CCNNNNNNNGG 2 cut(s) 146, 603
BsmAI GTCTC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 429
BsmI GAATGC 1 cut(s) 35
BsnI GGCC 1 cut(s) 138
Bsp143I GATC 3 cut(s) 49, 169, 395
BspACI CCGC 3 cut(s) 14, 514, 842
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 2 cut(s) 19, 679
BspLI GGNNCC 2 cut(s) 51, 511
BspMAI CTGCAG 1 cut(s) 475
BspPI GGATC 2 cut(s) 44, 57
BssECI CCNNGG 1 cut(s) 729
BssMI GATC 3 cut(s) 49, 169, 395
BssT1I CCWWGG 1 cut(s) 729
Bst6I CTCTTC 1 cut(s) 791
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 4 cut(s) 6, 91, 666, 779
BstF5I GGATG 4 cut(s) 471, 630, 673, 838
BstKTI GATC 3 cut(s) 52, 172, 398
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 3 cut(s) 49, 169, 395
BstMWI GCNNNNNNNGC 2 cut(s) 87, 172
BstNSI RCATGY 3 cut(s) 207, 244, 499
BstSFI CTRYAG 2 cut(s) 115, 471
BstV2I GAAGAC 1 cut(s) 337
BstX2I RGATCY 1 cut(s) 49
BstXI CCANNNNNNTGG 2 cut(s) 442, 685
BstYI RGATCY 1 cut(s) 49
BsuRI GGCC 1 cut(s) 138
BtsCI GGATG 4 cut(s) 471, 630, 673, 838
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 2 cut(s) 204, 752
Cac8I GCNNGC 1 cut(s) 205
Cfr13I GGNCC 2 cut(s) 137, 656
Csp6I GTAC 2 cut(s) 709, 826
CviAII CATG 7 cut(s) 46, 204, 230, 241, 423, 496, 529
CviJI RGCY 8 cut(s) 90, 102, 138, 166, 510, 553, 574, 778
CviKI_1 RGCY 8 cut(s) 90, 102, 138, 166, 510, 553, 574, 778
CviQI GTAC 2 cut(s) 709, 826
DdeI CTNAG 4 cut(s) 6, 91, 666, 779
DpnI GATC 3 cut(s) 51, 171, 397
DpnII GATC 3 cut(s) 49, 169, 395
Eam1104I CTCTTC 1 cut(s) 791
EarI CTCTTC 1 cut(s) 791
Eco130I CCWWGG 1 cut(s) 729
Eco47I GGWCC 1 cut(s) 656
Eco57I CTGAAG 2 cut(s) 521, 776
EcoT14I CCWWGG 1 cut(s) 729
ErhI CCWWGG 1 cut(s) 729
FaeI CATG 7 cut(s) 49, 207, 233, 244, 426, 499, 532
FalI AAGNNNNNCTT 2 cut(s) 558, 590
FaqI GGGAC 1 cut(s) 429
FatI CATG 7 cut(s) 45, 203, 229, 240, 422, 495, 528
FauI CCCGC 1 cut(s) 521
FauNDI CATATG 1 cut(s) 128
FokI GGATG 4 cut(s) 478, 617, 660, 825
FspBI CTAG 1 cut(s) 377
GsaI CCCAGC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 197
HaeIII GGCC 1 cut(s) 138
Hin1II CATG 7 cut(s) 49, 207, 233, 244, 426, 499, 532
HindIII AAGCTT 5 cut(s) 88, 164, 551, 572, 776
HinfI GANTC 2 cut(s) 4, 380
HphI GGTGA 2 cut(s) 320, 805
Hpy188I TCNGA 3 cut(s) 9, 154, 547
Hpy188III TCNNGA 1 cut(s) 610
Hpy99I CGWCG 1 cut(s) 292
HpyAV CCTTC 4 cut(s) 4, 128, 228, 382
HpyCH4IV ACGT 2 cut(s) 740, 835
HpyCH4V TGCA 4 cut(s) 45, 207, 244, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 172
HpyF3I CTNAG 4 cut(s) 6, 91, 666, 779
HpySE526I ACGT 2 cut(s) 740, 835
Hsp92II CATG 7 cut(s) 49, 207, 233, 244, 426, 499, 532
Kzo9I GATC 3 cut(s) 49, 169, 395
LmnI GCTCC 2 cut(s) 515, 537
LpnPI CCDG 3 cut(s) 67, 161, 520
LweI GCATC 1 cut(s) 421
MaeI CTAG 1 cut(s) 377
MaeII ACGT 2 cut(s) 740, 835
MalI GATC 3 cut(s) 51, 171, 397
MboI GATC 3 cut(s) 49, 169, 395
MboII GAAGA 7 cut(s) 218, 337, 405, 514, 769, 772, 808
MflI RGATCY 1 cut(s) 49
MnlI CCTC 3 cut(s) 172, 675, 792
MroXI GAANNNNTTC 1 cut(s) 225
MseI TTAA 2 cut(s) 104, 807
MslI CAYNNNNRTG 2 cut(s) 40, 228
Mva1269I GAATGC 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 87, 172
NdeI CATATG 1 cut(s) 128
NdeII GATC 3 cut(s) 49, 169, 395
NlaIII CATG 7 cut(s) 49, 207, 233, 244, 426, 499, 532
NlaIV GGNNCC 2 cut(s) 51, 511
NspI RCATGY 3 cut(s) 207, 244, 499
PaeI GCATGC 1 cut(s) 207
PctI GAATGC 1 cut(s) 35
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 1 cut(s) 380
PflMI CCANNNNNTGG 2 cut(s) 146, 603
PsiI TTATAA 1 cut(s) 185
Psp1406I AACGTT 1 cut(s) 740
PspFI CCCAGC 1 cut(s) 81
PspN4I GGNNCC 2 cut(s) 51, 511
PspPI GGNCC 2 cut(s) 137, 656
PstI CTGCAG 1 cut(s) 475
PsuI RGATCY 1 cut(s) 49
RsaI GTAC 2 cut(s) 710, 827
RsaNI GTAC 2 cut(s) 709, 826
RseI CAYNNNNRTG 2 cut(s) 40, 228
SaqAI TTAA 2 cut(s) 104, 807
Sau3AI GATC 3 cut(s) 49, 169, 395
Sau96I GGNCC 2 cut(s) 137, 656
SfaNI GCATC 1 cut(s) 421
SfcI CTRYAG 2 cut(s) 115, 471
SinI GGWCC 1 cut(s) 656
SmiMI CAYNNNNRTG 2 cut(s) 40, 228
SphI GCATGC 1 cut(s) 207
SsiI CCGC 3 cut(s) 14, 514, 842
SspMI CTAG 1 cut(s) 377
StyI CCWWGG 1 cut(s) 729
TaiI ACGT 2 cut(s) 743, 838
TatI WGTACW 1 cut(s) 708
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 2 cut(s) 104, 807
Tru9I TTAA 2 cut(s) 104, 807
TscAI CASTG 2 cut(s) 204, 759
TspDTI ATGAA 5 cut(s) 115, 218, 401, 545, 575
TspGWI ACGGA 1 cut(s) 593
TspRI CASTG 2 cut(s) 204, 759
Van91I CCANNNNNTGG 2 cut(s) 146, 603
VpaK11BI GGWCC 1 cut(s) 656
XceI RCATGY 3 cut(s) 207, 244, 499
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.