Rroxscaffold_1G00064120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000274
Physical Location & Seq
Forward (+)
85958735 .. 85960303
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00064120.1

Sequence Viewer

Length: 507 bp
ATGGGTCTCTACTCTTACGTTGTGAGATTAAAGAATAAGAAAATAACACGAGAAAAAGGACAACATTTACTGGTGGGGAGATGTGAAAGCAAAACGACGAAGAAAGCAAAGGAGATTGAAGAGAGATTGAAAGATGCCGAAAAGAAAGAAAAAGAAAAGGATTTGAAGGCCTCATTGCAAGATGCTGAACGTAAAAAGCTCGAACAGATGGTAGAACAACGAAGTTGGACGATTTACCGAGAGGATTATACTGGGATGGAAGACAGATATGGGGCACAGGTTTCAAGACAGGATTTAAAAGACATGATCATGGATGAACCGATAGCAAGCAATTGCATCGAATGTTATGGAATTCTCTTGATCGATCGGTTGTTGGAGAAACAATCTCAAGACTTGGATGTCCCAACTTTTATGAATCCCTTATACTGGGTTAACATGGTAGAACTTTGGATGACAGCGGTCAAAGAACAGCGAGATGACATGCTTGGAACAGGGATGCGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

19.88

Weight (kDa)

6.05

Isoelectric Point (pI)

37.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 398
AciI CCGC 1 cut(s) 458
AcsI RAATTY 1 cut(s) 351
AfiI CCNNNNNNNGG 1 cut(s) 426
AgsI TTSAA 4 cut(s) 119, 130, 166, 285
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw26I GTCTC 1 cut(s) 11
AoxI GGCC 1 cut(s) 168
ApoI RAATTY 1 cut(s) 351
BaeGI GKGCMC 1 cut(s) 277
BauI CACGAG 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 267
BccI CCATC 2 cut(s) 202, 250
BcgI CGANNNNNNTGC 2 cut(s) 319, 353
BclI TGATCA 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 11
BmrI ACTGGG 2 cut(s) 261, 436
BmsI GCATC 4 cut(s) 124, 172, 345, 486
BmuI ACTGGG 2 cut(s) 261, 436
BoxI GACNNNNGTC 1 cut(s) 458
BpiI GAAGAC 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 372
Bsa29I ATCGAT 1 cut(s) 363
BsaI GGTCTC 1 cut(s) 11
Bsc4I CCNNNNNNNGG 1 cut(s) 426
Bse1I ACTGG 3 cut(s) 75, 256, 431
Bse3DI GCAATG 1 cut(s) 173
BseCI ATCGAT 1 cut(s) 363
BseGI GGATG 5 cut(s) 261, 319, 403, 456, 501
BseLI CCNNNNNNNGG 1 cut(s) 426
BseMI GCAATG 1 cut(s) 173
BseNI ACTGG 3 cut(s) 75, 256, 431
BseSI GKGCMC 1 cut(s) 277
Bsh1285I CGRYCG 1 cut(s) 367
BshFI GGCC 1 cut(s) 170
BshVI ATCGAT 1 cut(s) 363
BsiEI CGRYCG 1 cut(s) 367
BslFI GGGAC 1 cut(s) 386
BslI CCNNNNNNNGG 1 cut(s) 426
BsmAI GTCTC 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 386
BsnI GGCC 1 cut(s) 170
Bso31I GGTCTC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 3 cut(s) 306, 360, 364
BspACI CCGC 1 cut(s) 458
BspANI GGCC 1 cut(s) 170
BspDI ATCGAT 1 cut(s) 363
BspTNI GGTCTC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 173
BsrI ACTGG 3 cut(s) 75, 256, 431
BssMI GATC 3 cut(s) 306, 360, 364
BssSI CACGAG 1 cut(s) 48
Bst2BI CACGAG 1 cut(s) 48
Bst6I CTCTTC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 328
BstF5I GGATG 5 cut(s) 261, 319, 403, 456, 501
BstKTI GATC 3 cut(s) 309, 363, 367
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 3 cut(s) 306, 360, 364
BstMCI CGRYCG 1 cut(s) 367
BstNSI RCATGY 1 cut(s) 484
BstPAI GACNNNNGTC 1 cut(s) 458
BstSLI GKGCMC 1 cut(s) 277
BstV2I GAAGAC 1 cut(s) 267
Bsu15I ATCGAT 1 cut(s) 363
BsuRI GGCC 1 cut(s) 170
BsuTUI ATCGAT 1 cut(s) 363
BtsCI GGATG 5 cut(s) 261, 319, 403, 456, 501
Cac8I GCNNGC 1 cut(s) 328
ClaI ATCGAT 1 cut(s) 363
CviAII CATG 4 cut(s) 304, 310, 436, 481
CviJI RGCY 2 cut(s) 170, 199
CviKI_1 RGCY 2 cut(s) 170, 199
DpnI GATC 3 cut(s) 308, 362, 366
DpnII GATC 3 cut(s) 306, 360, 364
DraI TTTAAA 1 cut(s) 297
DrdI GACNNNNNNGTC 1 cut(s) 398
DseDI GACNNNNNNGTC 1 cut(s) 398
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco147I AGGCCT 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 11
EcoRI GAATTC 1 cut(s) 351
FaeI CATG 4 cut(s) 307, 313, 439, 484
FaiI YATR 9 cut(s) 249, 270, 305, 311, 348, 413, 424, 437, 482
FaqI GGGAC 1 cut(s) 386
FatI CATG 4 cut(s) 303, 309, 435, 480
FbaI TGATCA 1 cut(s) 306
FokI GGATG 4 cut(s) 268, 326, 410, 463
HaeIII GGCC 1 cut(s) 170
Hin1II CATG 4 cut(s) 307, 313, 439, 484
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HinfI GANTC 1 cut(s) 415
HpaI GTTAAC 1 cut(s) 433
Hpy166II GTNNAC 1 cut(s) 433
Hpy188III TCNNGA 3 cut(s) 285, 358, 389
Hpy8I GTNNAC 1 cut(s) 433
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 160
HpyCH4IV ACGT 2 cut(s) 18, 190
HpyCH4V TGCA 2 cut(s) 178, 336
HpySE526I ACGT 2 cut(s) 18, 190
Hsp92II CATG 4 cut(s) 307, 313, 439, 484
Ksp22I TGATCA 1 cut(s) 306
KspAI GTTAAC 1 cut(s) 433
Kzo9I GATC 3 cut(s) 306, 360, 364
LpnPI CCDG 6 cut(s) 56, 237, 263, 275, 412, 477
LweI GCATC 4 cut(s) 124, 172, 345, 486
MaeII ACGT 2 cut(s) 18, 190
MalI GATC 3 cut(s) 308, 362, 366
MboI GATC 3 cut(s) 306, 360, 364
MboII GAAGA 3 cut(s) 112, 131, 272
MfeI CAATTG 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 2 cut(s) 331, 351
MmeI TCCRAC 2 cut(s) 206, 354
MnlI CCTC 2 cut(s) 181, 235
MseI TTAA 3 cut(s) 29, 296, 432
MslI CAYNNNNRTG 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 458
MunI CAATTG 1 cut(s) 331
NdeII GATC 3 cut(s) 306, 360, 364
NlaIII CATG 4 cut(s) 307, 313, 439, 484
NspI RCATGY 1 cut(s) 484
PceI AGGCCT 1 cut(s) 170
PfeI GAWTC 1 cut(s) 415
Ple19I CGATCG 1 cut(s) 367
PshAI GACNNNNGTC 1 cut(s) 458
PvuI CGATCG 1 cut(s) 367
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 3 cut(s) 29, 296, 432
Sau3AI GATC 3 cut(s) 306, 360, 364
SduI GDGCHC 1 cut(s) 277
SetI ASST 4 cut(s) 21, 193, 201, 282
SfaNI GCATC 4 cut(s) 124, 172, 345, 486
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 387
SmoI CTYRAG 1 cut(s) 387
Sse9I AATT 2 cut(s) 331, 351
SseBI AGGCCT 1 cut(s) 170
SsiI CCGC 1 cut(s) 458
StuI AGGCCT 1 cut(s) 170
TaiI ACGT 2 cut(s) 21, 193
TaqI TCGA 3 cut(s) 201, 339, 363
TasI AATT 2 cut(s) 331, 351
TfiI GAWTC 1 cut(s) 415
Tru1I TTAA 3 cut(s) 29, 296, 432
Tru9I TTAA 3 cut(s) 29, 296, 432
TspDTI ATGAA 2 cut(s) 330, 428
XapI RAATTY 1 cut(s) 351
XceI RCATGY 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.