Rmu_sc0000885.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000885.1
OG0000274
Physical Location & Seq
Reverse (-)
3068 .. 5122
2055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000885.1_g000002.1.cds

Sequence Viewer

Length: 408 bp
atgggatctgcacagtcgaagaatctgcagaagcagcatctcaatctccacctcactgcacagtgccagaagaaattaaatcgacacctccatcacacaaggagtcacagttccagagccccaaagtccacatgctcacagtggcgaaaatggaacaacaagatgacaaatgttaaaatggtagagctttggatgactgcagtaaaagaacaagcagatgacatggtagaacaaggttgcaggatgaaatttgatgaaaagaacagttcagaagaacaactgaaaatgatggaagttccattgactgaaacagagagagaaagcataaagtggatcaaggataactacaaacgaaaaatggcagtgacagaactcaaagacaaccctcagcaaggagaagattcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.94

Weight (kDa)

9.3

Isoelectric Point (pI)

61.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 13, 341
AcsI RAATTY 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 392
AloI GAACNNNNNNTCC 2 cut(s) 94, 126
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
AlwI GGATC 2 cut(s) 13, 341
ApeKI GCWGC 1 cut(s) 34
ApoI RAATTY 1 cut(s) 248
BanII GRGCYC 1 cut(s) 121
BbvCI CCTCAGC 1 cut(s) 387
BbvI GCAGC 1 cut(s) 46
BccI CCATC 2 cut(s) 99, 283
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BfmI CTRYAG 2 cut(s) 26, 198
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
BmsI GCATC 1 cut(s) 46
Bpu10I CCTNAGC 1 cut(s) 387
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bsc4I CCNNNNNNNGG 1 cut(s) 392
BseGI GGATG 2 cut(s) 198, 249
BseLI CCNNNNNNNGG 1 cut(s) 392
BseMII CTCAG 1 cut(s) 401
BseXI GCAGC 1 cut(s) 46
BsgI GTGCAG 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 392
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 2 cut(s) 5, 333
BspCNI CTCAG 1 cut(s) 400
BspMAI CTGCAG 2 cut(s) 30, 202
BspPI GGATC 2 cut(s) 13, 341
BssMI GATC 2 cut(s) 5, 333
Bst4CI ACNGT 5 cut(s) 15, 63, 110, 141, 266
BstDEI CTNAG 1 cut(s) 387
BstENI CCTNNNNNAGG 1 cut(s) 390
BstF5I GGATG 2 cut(s) 198, 249
BstKTI GATC 2 cut(s) 8, 336
BstMBI GATC 2 cut(s) 5, 333
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNSI RCATGY 1 cut(s) 135
BstSFI CTRYAG 2 cut(s) 26, 198
BstV1I GCAGC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
BtsCI GGATG 2 cut(s) 198, 249
BtsI GCAGTG 2 cut(s) 54, 369
BtsIMutI CAGTG 4 cut(s) 54, 68, 146, 369
CviAII CATG 2 cut(s) 132, 223
CviJI RGCY 2 cut(s) 119, 187
CviKI_1 RGCY 2 cut(s) 119, 187
DdeI CTNAG 1 cut(s) 387
DpnI GATC 2 cut(s) 7, 335
DpnII GATC 2 cut(s) 5, 333
Eco24I GRGCYC 1 cut(s) 121
EcoNI CCTNNNNNAGG 1 cut(s) 390
EcoT38I GRGCYC 1 cut(s) 121
FaeI CATG 2 cut(s) 135, 226
FaiI YATR 3 cut(s) 133, 224, 326
FatI CATG 2 cut(s) 131, 222
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 2 cut(s) 205, 256
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 35
GluI GCNGC 1 cut(s) 35
Hin1II CATG 2 cut(s) 135, 226
HinfI GANTC 3 cut(s) 22, 103, 401
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 1 cut(s) 114
Hpy8I GTNNAC 1 cut(s) 129
HpyCH4III ACNGT 5 cut(s) 15, 63, 110, 141, 266
HpyCH4V TGCA 5 cut(s) 11, 28, 59, 200, 240
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 1 cut(s) 387
Hsp92II CATG 2 cut(s) 135, 226
Kzo9I GATC 2 cut(s) 5, 333
LpnPI CCDG 3 cut(s) 80, 127, 226
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 1 cut(s) 46
MaeIII GTNAC 2 cut(s) 104, 364
MalI GATC 2 cut(s) 7, 335
MboI GATC 2 cut(s) 5, 333
MboII GAAGA 3 cut(s) 31, 82, 284
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 2 cut(s) 74, 248
MlyI GAGTC 1 cut(s) 112
MnlI CCTC 3 cut(s) 62, 98, 396
MseI TTAA 2 cut(s) 77, 174
MwoI GCNNNNNNNGC 1 cut(s) 34
NdeII GATC 2 cut(s) 5, 333
NlaIII CATG 2 cut(s) 135, 226
NmuCI GTSAC 2 cut(s) 104, 364
NspI RCATGY 1 cut(s) 135
PfeI GAWTC 2 cut(s) 22, 401
PkrI GCNGC 1 cut(s) 36
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
PstI CTGCAG 2 cut(s) 30, 202
PsuI RGATCY 1 cut(s) 5
SaqAI TTAA 2 cut(s) 77, 174
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 2 cut(s) 5, 333
SchI GAGTC 1 cut(s) 112
SduI GDGCHC 1 cut(s) 121
SetI ASST 4 cut(s) 54, 90, 189, 238
SfaNI GCATC 1 cut(s) 46
SfcI CTRYAG 2 cut(s) 26, 198
Sse9I AATT 2 cut(s) 74, 248
TaaI ACNGT 5 cut(s) 15, 63, 110, 141, 266
TaqI TCGA 2 cut(s) 17, 82
TasI AATT 2 cut(s) 74, 248
TfiI GAWTC 2 cut(s) 22, 401
Tru1I TTAA 2 cut(s) 77, 174
Tru9I TTAA 2 cut(s) 77, 174
TscAI CASTG 4 cut(s) 61, 68, 146, 369
TseFI GTSAC 2 cut(s) 104, 364
TseI GCWGC 1 cut(s) 34
Tsp45I GTSAC 2 cut(s) 104, 364
TspDTI ATGAA 2 cut(s) 260, 270
TspRI CASTG 4 cut(s) 61, 68, 146, 369
XagI CCTNNNNNAGG 1 cut(s) 390
XapI RAATTY 1 cut(s) 248
XceI RCATGY 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.