Rmu_sc0019088.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019088.1
OG0000274
Physical Location & Seq
Forward (+)
465 .. 1711
1247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019088.1_g000001.1.cds

Sequence Viewer

Length: 483 bp
atggaagaccaaaaagaaatggcaggacaccaagaggagagtgcagagatactggcaaaatgcaccatcagggtaggtaggcgctatgaagcagaggtatccagacatgatttgaaggacatgaacatgaatgaacctattgcaagcaactgcatagaatgctatgggattctgttgattgatcaactattggacaaagaatcacagggtctggaggtgccatcttttatgaatcccttatgctggattgaaatggtagagctttggatgacagcagtcaaagaccaagcagatgacatgctagaacaaggatgccgaatgaaatttgatgaaaagaacagctcagaagaacaattaaaactaattggagttccactgactgaaactgagatagaaagcataaaatggatcagggataactgtaatggaaaaatgaatgtgcaagacgttaaaagctgccctcaacaaggagaagactcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.36

Weight (kDa)

4.45

Isoelectric Point (pI)

65.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 217
AclWI GGATC 1 cut(s) 416
AcsI RAATTY 1 cut(s) 323
AfiI CCNNNNNNNGG 2 cut(s) 243, 467
AgsI TTSAA 2 cut(s) 115, 251
AluBI AGCT 3 cut(s) 262, 342, 456
AluI AGCT 3 cut(s) 262, 342, 456
AlwI GGATC 1 cut(s) 416
AlwNI CAGNNNCTG 1 cut(s) 211
ApeKI GCWGC 1 cut(s) 456
ApoI RAATTY 1 cut(s) 323
AspLEI GCGC 1 cut(s) 84
BanI GGYRCC 1 cut(s) 217
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 443
BccI CCATC 2 cut(s) 74, 229
BciVI GTATCC 1 cut(s) 109
BclI TGATCA 1 cut(s) 181
BfaI CTAG 1 cut(s) 302
BfoI RGCGCY 1 cut(s) 85
BfuI GTATCC 1 cut(s) 109
BisI GCNGC 1 cut(s) 457
BlsI GCNGC 1 cut(s) 458
BmiI GGNNCC 1 cut(s) 219
BmsI GCATC 1 cut(s) 302
BoxI GACNNNNGTC 1 cut(s) 275
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 233
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 467
Bse1I ACTGG 1 cut(s) 57
BseGI GGATG 2 cut(s) 273, 317
BseLI CCNNNNNNNGG 2 cut(s) 243, 467
BseMII CTCAG 2 cut(s) 357, 378
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 443
BsgI GTGCAG 1 cut(s) 63
BshNI GGYRCC 1 cut(s) 217
BslI CCNNNNNNNGG 2 cut(s) 243, 467
BsmI GAATGC 1 cut(s) 164
Bsp143I GATC 2 cut(s) 181, 408
BspCNI CTCAG 2 cut(s) 356, 379
BspLI GGNNCC 1 cut(s) 219
BspPI GGATC 1 cut(s) 416
BspT107I GGYRCC 1 cut(s) 217
BsrI ACTGG 1 cut(s) 57
BssMI GATC 2 cut(s) 181, 408
Bst4CI ACNGT 1 cut(s) 422
BstAPI GCANNNNNTGC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 2 cut(s) 343, 387
BstENI CCTNNNNNAGG 1 cut(s) 465
BstF5I GGATG 2 cut(s) 273, 317
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 2 cut(s) 184, 411
BstMBI GATC 2 cut(s) 181, 408
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstNSI RCATGY 1 cut(s) 301
BstPAI GACNNNNGTC 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 443
BstV2I GAAGAC 1 cut(s) 12
BsuI GTATCC 1 cut(s) 109
BtsCI GGATG 2 cut(s) 273, 317
BtsIMutI CAGTG 1 cut(s) 374
Cac8I GCNNGC 1 cut(s) 145
CaiI CAGNNNCTG 1 cut(s) 211
CfoI GCGC 1 cut(s) 84
CviAII CATG 4 cut(s) 107, 121, 127, 298
CviJI RGCY 3 cut(s) 262, 342, 456
CviKI_1 RGCY 3 cut(s) 262, 342, 456
DdeI CTNAG 2 cut(s) 343, 387
DpnI GATC 2 cut(s) 183, 410
DpnII GATC 2 cut(s) 181, 408
EcoNI CCTNNNNNAGG 1 cut(s) 465
FaeI CATG 4 cut(s) 110, 124, 130, 301
FatI CATG 4 cut(s) 106, 120, 126, 297
FbaI TGATCA 1 cut(s) 181
Fnu4HI GCNGC 1 cut(s) 457
FokI GGATG 2 cut(s) 280, 324
Fsp4HI GCNGC 1 cut(s) 457
FspBI CTAG 1 cut(s) 302
GlaI GCGC 1 cut(s) 83
GluI GCNGC 1 cut(s) 457
GsuI CTGGAG 1 cut(s) 233
HaeII RGCGCY 1 cut(s) 85
HhaI GCGC 1 cut(s) 84
Hin1II CATG 4 cut(s) 110, 124, 130, 301
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HinfI GANTC 4 cut(s) 169, 200, 232, 476
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 2 cut(s) 102, 212
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 422
HpyCH4IV ACGT 1 cut(s) 447
HpyCH4V TGCA 5 cut(s) 44, 63, 143, 153, 442
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 2 cut(s) 343, 387
HpySE526I ACGT 1 cut(s) 447
Hsp92II CATG 4 cut(s) 110, 124, 130, 301
HspAI GCGC 1 cut(s) 82
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 2 cut(s) 181, 408
LpnPI CCDG 8 cut(s) 9, 38, 55, 115, 191, 197, 229, 397
Lsp1109I GCAGC 1 cut(s) 443
LweI GCATC 1 cut(s) 302
MaeI CTAG 1 cut(s) 302
MaeII ACGT 1 cut(s) 447
MalI GATC 2 cut(s) 183, 410
MboI GATC 2 cut(s) 181, 408
MboII GAAGA 2 cut(s) 17, 359
MluCI AATT 3 cut(s) 323, 353, 363
MlyI GAGTC 1 cut(s) 470
MnlI CCTC 4 cut(s) 28, 88, 208, 471
MseI TTAA 2 cut(s) 356, 450
MslI CAYNNNNRTG 1 cut(s) 125
Mva1269I GAATGC 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeII GATC 2 cut(s) 181, 408
NlaIII CATG 4 cut(s) 110, 124, 130, 301
NlaIV GGNNCC 1 cut(s) 219
NspI RCATGY 1 cut(s) 301
PctI GAATGC 1 cut(s) 164
PfeI GAWTC 3 cut(s) 169, 200, 232
PkrI GCNGC 1 cut(s) 458
PleI GAGTC 1 cut(s) 470
PpsI GAGTC 1 cut(s) 470
PshAI GACNNNNGTC 1 cut(s) 275
PspN4I GGNNCC 1 cut(s) 219
PstNI CAGNNNCTG 1 cut(s) 211
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 2 cut(s) 356, 450
SatI GCNGC 1 cut(s) 457
Sau3AI GATC 2 cut(s) 181, 408
SchI GAGTC 1 cut(s) 470
SetI ASST 8 cut(s) 79, 99, 139, 219, 264, 344, 450, 458
SfaNI GCATC 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 125
Sse9I AATT 3 cut(s) 323, 353, 363
SspMI CTAG 1 cut(s) 302
TaaI ACNGT 1 cut(s) 422
TaiI ACGT 1 cut(s) 450
TasI AATT 3 cut(s) 323, 353, 363
TfiI GAWTC 3 cut(s) 169, 200, 232
Tru1I TTAA 2 cut(s) 356, 450
Tru9I TTAA 2 cut(s) 356, 450
TscAI CASTG 1 cut(s) 381
TseI GCWGC 1 cut(s) 456
TspDTI ATGAA 8 cut(s) 102, 137, 143, 147, 245, 335, 345, 449
TspRI CASTG 1 cut(s) 381
XagI CCTNNNNNAGG 1 cut(s) 465
XapI RAATTY 1 cut(s) 323
XceI RCATGY 1 cut(s) 301
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.