Rorug04G0114700

Protein of unknown function (DUF707)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
18014904 .. 18015326
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0114700.1

Sequence Viewer

Length: 423 bp
ATGGAGGAGGCTATTCCACCGAGTTGGAGCAGTACTTTAGGGGAATTTCACCGAGGCATGAACGCTGTCTTGGCCTTGTTAATTGGACTGGAGTACGCAACAGGGACGGAAAATCTCACCACACTACTTGTTGCCTTAGTCTCCTACTTTGCATTAATATATGCTGCCAAGAAACTCAAGGCTGATCCCAATCTCAGAGATTTTGGTGCATTCATCAACAAGATGAGTATCTTGTTTGGAATTCTTGCCTTGATTTTTGAACTGCTCATCATTGTTCTAGCTTATGGATCAGTCCCGCTCTTCTTATGGAGCATCCTTGCAGTGAGCGTTGCAGTTGCGGTTGCGGTTCTTCTTCGCCTAGCCTTTGTAGAATTGAAGGAGAACCTGATGTTGATCTGTAATACCCCGAAAAATCCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

140

Amino Acids

15.28

Weight (kDa)

5.75

Isoelectric Point (pI)

29.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 298
AciI CCGC 3 cut(s) 296, 338, 344
AclWI GGATC 2 cut(s) 179, 295
AcsI RAATTY 2 cut(s) 44, 240
AfaI GTAC 2 cut(s) 34, 95
AgsI TTSAA 2 cut(s) 260, 376
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 1 cut(s) 281
AluI AGCT 1 cut(s) 281
Alw26I GTCTC 1 cut(s) 145
AlwI GGATC 2 cut(s) 179, 295
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 2 cut(s) 44, 240
AseI ATTAAT 1 cut(s) 155
AsuHPI GGTGA 2 cut(s) 41, 109
BbvI GCAGC 1 cut(s) 151
BcoDI GTCTC 1 cut(s) 145
BfaI CTAG 2 cut(s) 278, 359
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
BmcAI AGTACT 1 cut(s) 34
BmsI GCATC 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 161
BsaBI GATNNNNATC 3 cut(s) 189, 227, 392
BsaJI CCNNGG 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 93
Bse8I GATNNNNATC 3 cut(s) 189, 227, 392
BseDI CCNNGG 1 cut(s) 52
BseGI GGATG 1 cut(s) 312
BseJI GATNNNNATC 3 cut(s) 189, 227, 392
BseMII CTCAG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 93
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 151
BshFI GGCC 1 cut(s) 74
BslFI GGGAC 2 cut(s) 118, 278
BsmAI GTCTC 1 cut(s) 145
BsmFI GGGAC 2 cut(s) 118, 278
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 1 cut(s) 74
Bsp143I GATC 3 cut(s) 184, 287, 393
BspACI CCGC 3 cut(s) 296, 338, 344
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 207
BspPI GGATC 2 cut(s) 179, 295
BspQI GCTCTTC 1 cut(s) 305
BsrBI CCGCTC 1 cut(s) 298
BsrI ACTGG 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 3 cut(s) 184, 287, 393
Bst6I CTCTTC 1 cut(s) 305
BstDEI CTNAG 2 cut(s) 136, 194
BstF5I GGATG 1 cut(s) 312
BstKTI GATC 3 cut(s) 187, 290, 396
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 3 cut(s) 184, 287, 393
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 151
BstXI CCANNNNNNTGG 1 cut(s) 24
BsuRI GGCC 1 cut(s) 74
BtsCI GGATG 1 cut(s) 312
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 327
Csp6I GTAC 2 cut(s) 33, 94
CspCI CAANNNNNGTGG 2 cut(s) 109, 144
CviAII CATG 1 cut(s) 58
CviJI RGCY 5 cut(s) 11, 74, 182, 281, 362
CviKI_1 RGCY 5 cut(s) 11, 74, 182, 281, 362
CviQI GTAC 2 cut(s) 33, 94
DdeI CTNAG 2 cut(s) 136, 194
DpnI GATC 3 cut(s) 186, 289, 395
DpnII GATC 3 cut(s) 184, 287, 393
Eam1104I CTCTTC 1 cut(s) 305
EarI CTCTTC 1 cut(s) 305
EcoRI GAATTC 1 cut(s) 240
FaeI CATG 1 cut(s) 61
FaiI YATR 5 cut(s) 59, 160, 162, 285, 307
FaqI GGGAC 2 cut(s) 118, 278
FatI CATG 1 cut(s) 57
FauI CCCGC 1 cut(s) 303
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 1 cut(s) 299
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 2 cut(s) 278, 359
GluI GCNGC 1 cut(s) 165
GsuI CTGGAG 1 cut(s) 110
HaeIII GGCC 1 cut(s) 74
Hin1II CATG 1 cut(s) 61
HphI GGTGA 2 cut(s) 41, 109
Hpy188I TCNGA 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 370
HpyCH4V TGCA 4 cut(s) 152, 209, 320, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 2 cut(s) 136, 194
Hsp92II CATG 1 cut(s) 61
Kzo9I GATC 3 cut(s) 184, 287, 393
LguI GCTCTTC 1 cut(s) 305
LmnI GCTCC 2 cut(s) 27, 309
LpnPI CCDG 3 cut(s) 74, 87, 398
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 1 cut(s) 321
MaeI CTAG 2 cut(s) 278, 359
MalI GATC 3 cut(s) 186, 289, 395
MbiI CCGCTC 1 cut(s) 298
MboI GATC 3 cut(s) 184, 287, 393
MboII GAAGA 3 cut(s) 292, 341, 344
MluCI AATT 5 cut(s) 44, 81, 240, 371, 418
MmeI TCCRAC 1 cut(s) 5
MnlI CCTC 1 cut(s) 47
MseI TTAA 3 cut(s) 80, 155, 421
Mva1269I GAATGC 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 3 cut(s) 184, 287, 393
NlaIII CATG 1 cut(s) 61
PciSI GCTCTTC 1 cut(s) 305
PctI GAATGC 1 cut(s) 209
PkrI GCNGC 1 cut(s) 166
PshBI ATTAAT 1 cut(s) 155
RsaI GTAC 2 cut(s) 34, 95
RsaNI GTAC 2 cut(s) 33, 94
SapI GCTCTTC 1 cut(s) 305
SaqAI TTAA 3 cut(s) 80, 155, 421
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 3 cut(s) 184, 287, 393
ScaI AGTACT 1 cut(s) 34
SetI ASST 2 cut(s) 283, 387
SfaNI GCATC 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 5 cut(s) 44, 81, 240, 371, 418
SsiI CCGC 3 cut(s) 296, 338, 344
SspMI CTAG 2 cut(s) 278, 359
TasI AATT 5 cut(s) 44, 81, 240, 371, 418
TatI WGTACW 1 cut(s) 32
Tru1I TTAA 3 cut(s) 80, 155, 421
Tru9I TTAA 3 cut(s) 80, 155, 421
TscAI CASTG 1 cut(s) 327
TseI GCWGC 1 cut(s) 164
TspDTI ATGAA 2 cut(s) 74, 202
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 1 cut(s) 327
VspI ATTAAT 1 cut(s) 155
XapI RAATTY 2 cut(s) 44, 240
XspI CTAG 2 cut(s) 278, 359
ZrmI AGTACT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.