Rorug01G0120300

Belongs to the peptidase M16 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
21031130 .. 21032854
1725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0120300.1

Sequence Viewer

Length: 348 bp
ATGATCACTCTCTCTCTCTCTCGCATCTTCATTCACTCGAAACCCAGATTGAAGAACCTGATCAAGAGATTGCACGATTATAAGGTACAATCATTGGCGACATGGCTGGGGCCGTTGATGAATGGATACCTCGAACGCAAAGTGGAGGCGAGGAAATCCCAAATTCCAAGAAAGAGAGATGCAAAAAGGGCAGCAAAAAAACCATCAACTGGATCAACAGCCACATCTGGTACAGCCAAAGGCAGACCACCAAAAGCATCATCAAGCAAGAGTAAATCTGCTTCTACACAGGCTTCATCAAGGTCCTCTGTGAGGATCCGAGAAAATGCAAAGAATGCTGGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

115

Amino Acids

12.65

Weight (kDa)

11.75

Isoelectric Point (pI)

32.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
AccB7I CCANNNNNTGG 1 cut(s) 209
AclWI GGATC 3 cut(s) 220, 310, 323
AcsI RAATTY 1 cut(s) 162
AfaI GTAC 2 cut(s) 87, 232
AfiI CCNNNNNNNGG 2 cut(s) 209, 312
AgsI TTSAA 1 cut(s) 52
AlwI GGATC 3 cut(s) 220, 310, 323
AoxI GGCC 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 162
AspS9I GGNCC 2 cut(s) 110, 303
AvaII GGWCC 1 cut(s) 303
BamHI GGATCC 1 cut(s) 315
BarI GAAGNNNNNNTAC 2 cut(s) 265, 297
BbvI GCAGC 1 cut(s) 203
BccI CCATC 1 cut(s) 211
BceAI ACGGC 1 cut(s) 97
BciVI GTATCC 1 cut(s) 119
BclI TGATCA 2 cut(s) 3, 60
BfuI GTATCC 1 cut(s) 119
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme18I GGWCC 1 cut(s) 303
BmgT120I GGNCC 2 cut(s) 110, 303
BmiI GGNNCC 2 cut(s) 111, 317
BmsI GCATC 3 cut(s) 33, 169, 266
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 312
Bse1I ACTGG 1 cut(s) 214
BseLI CCNNNNNNNGG 2 cut(s) 209, 312
BseNI ACTGG 1 cut(s) 214
BseXI GCAGC 1 cut(s) 203
BseYI CCCAGC 2 cut(s) 106, 338
BshFI GGCC 1 cut(s) 112
BslI CCNNNNNNNGG 2 cut(s) 209, 312
BsmI GAATGC 1 cut(s) 340
BsnI GGCC 1 cut(s) 112
Bsp143I GATC 4 cut(s) 3, 60, 212, 315
BspANI GGCC 1 cut(s) 112
BspLI GGNNCC 2 cut(s) 111, 317
BspPI GGATC 3 cut(s) 220, 310, 323
BsrI ACTGG 1 cut(s) 214
BssMI GATC 4 cut(s) 3, 60, 212, 315
BstAPI GCANNNNNTGC 1 cut(s) 335
BstENI CCTNNNNNAGG 1 cut(s) 310
BstKTI GATC 4 cut(s) 6, 63, 215, 318
BstMBI GATC 4 cut(s) 3, 60, 212, 315
BstMWI GCNNNNNNNGC 2 cut(s) 188, 335
BstV1I GCAGC 1 cut(s) 203
BstX2I RGATCY 1 cut(s) 315
BstYI RGATCY 1 cut(s) 315
BsuI GTATCC 1 cut(s) 119
BsuRI GGCC 1 cut(s) 112
Cfr13I GGNCC 2 cut(s) 110, 303
Csp6I GTAC 2 cut(s) 86, 231
CviAII CATG 1 cut(s) 102
CviJI RGCY 5 cut(s) 106, 112, 221, 236, 293
CviKI_1 RGCY 5 cut(s) 106, 112, 221, 236, 293
CviQI GTAC 2 cut(s) 86, 231
DpnI GATC 4 cut(s) 5, 62, 214, 317
DpnII GATC 4 cut(s) 3, 60, 212, 315
Eco47I GGWCC 1 cut(s) 303
EcoNI CCTNNNNNAGG 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 303
FaeI CATG 1 cut(s) 105
FaiI YATR 2 cut(s) 81, 103
FatI CATG 1 cut(s) 101
FbaI TGATCA 2 cut(s) 3, 60
Fnu4HI GCNGC 1 cut(s) 192
Fsp4HI GCNGC 1 cut(s) 192
GluI GCNGC 1 cut(s) 192
GsaI CCCAGC 2 cut(s) 110, 342
HaeIII GGCC 1 cut(s) 112
Hin1II CATG 1 cut(s) 105
Hpy188I TCNGA 1 cut(s) 320
Hpy188III TCNNGA 1 cut(s) 64
HpyCH4V TGCA 3 cut(s) 73, 182, 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 335
Hsp92II CATG 1 cut(s) 105
Ksp22I TGATCA 2 cut(s) 3, 60
Kzo9I GATC 4 cut(s) 3, 60, 212, 315
LpnPI CCDG 7 cut(s) 58, 71, 92, 195, 213, 275, 324
Lsp1109I GCAGC 1 cut(s) 203
LweI GCATC 3 cut(s) 33, 169, 266
MalI GATC 4 cut(s) 5, 62, 214, 317
MboI GATC 4 cut(s) 3, 60, 212, 315
MboII GAAGA 2 cut(s) 19, 64
MflI RGATCY 1 cut(s) 315
MluCI AATT 1 cut(s) 162
MnlI CCTC 5 cut(s) 139, 140, 144, 306, 316
Mva1269I GAATGC 1 cut(s) 340
MwoI GCNNNNNNNGC 2 cut(s) 188, 335
NdeII GATC 4 cut(s) 3, 60, 212, 315
NlaIII CATG 1 cut(s) 105
NlaIV GGNNCC 2 cut(s) 111, 317
PctI GAATGC 1 cut(s) 340
PflMI CCANNNNNTGG 1 cut(s) 209
PkrI GCNGC 1 cut(s) 193
PpuMI RGGWCCY 1 cut(s) 303
PsiI TTATAA 1 cut(s) 81
Psp5II RGGWCCY 1 cut(s) 303
PspFI CCCAGC 2 cut(s) 106, 338
PspN4I GGNNCC 2 cut(s) 111, 317
PspPI GGNCC 2 cut(s) 110, 303
PspPPI RGGWCCY 1 cut(s) 303
PsuI RGATCY 1 cut(s) 315
RsaI GTAC 2 cut(s) 87, 232
RsaNI GTAC 2 cut(s) 86, 231
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 4 cut(s) 3, 60, 212, 315
Sau96I GGNCC 2 cut(s) 110, 303
SetI ASST 4 cut(s) 60, 87, 132, 305
SfaNI GCATC 3 cut(s) 33, 169, 266
SinI GGWCC 1 cut(s) 303
Sse9I AATT 1 cut(s) 162
TaqI TCGA 2 cut(s) 38, 132
TasI AATT 1 cut(s) 162
TseI GCWGC 1 cut(s) 191
TspDTI ATGAA 3 cut(s) 19, 134, 285
Van91I CCANNNNNTGG 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 303
XagI CCTNNNNNAGG 1 cut(s) 310
XapI RAATTY 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.