MD17G1069300.v1.1

Belongs to the peptidase M16 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
5621486 .. 5624156
2671 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1069300.v1.1.491

Sequence Viewer

Length: 309 bp
ATGAAGCGAAGGTTAAAGAACACCAATATGAAGCCTCCGAGTCACTCATCATACTTAAGACTACAAGTTATCTGTCAAATTTTTTATGATGCAGATGAGAAGTTGCATGTTTTGGATGAATTGTCTATTTCTGATTTGAAGTCATTCATTCCCGAGCTTTGTTCCCAGCTATACATTGAATGCCTTTGCCATGGAAATTTGTTAAGAGGACAAAGCAATTACCCTGTCAAATATATTCAAATCGAATTGAGGCATAAAGACTGTATTGTCAAGTTGAGCAAGAAACAGGGATTGAGTAAATCCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

103

Amino Acids

11.9

Weight (kDa)

9.01

Isoelectric Point (pI)

61.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AcsI RAATTY 2 cut(s) 78, 196
AflII CTTAAG 1 cut(s) 55
AgsI TTSAA 3 cut(s) 139, 179, 239
AluBI AGCT 2 cut(s) 157, 169
AluI AGCT 2 cut(s) 157, 169
Ama87I CYCGRG 1 cut(s) 152
ApoI RAATTY 2 cut(s) 78, 196
Asp700I GAANNNNTTC 1 cut(s) 143
AvaI CYCGRG 1 cut(s) 152
BfrI CTTAAG 1 cut(s) 55
BmeT110I CYCGRG 1 cut(s) 152
BmsI GCATC 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 1 cut(s) 121
BseYI CCCAGC 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 152
BsmI GAATGC 1 cut(s) 185
BsoBI CYCGRG 1 cut(s) 152
Bsp19I CCATGG 1 cut(s) 190
BspTI CTTAAG 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 190
BssT1I CCWWGG 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 263
BstAFI CTTAAG 1 cut(s) 55
BstDSI CCRYGG 1 cut(s) 190
BstF5I GGATG 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 110
BtgI CCRYGG 1 cut(s) 190
BtsCI GGATG 1 cut(s) 121
CviAII CATG 2 cut(s) 107, 191
CviJI RGCY 3 cut(s) 34, 157, 169
CviKI_1 RGCY 3 cut(s) 34, 157, 169
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 190
Eco88I CYCGRG 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 2 cut(s) 110, 194
FaiI YATR 8 cut(s) 29, 52, 87, 108, 172, 192, 234, 255
FatI CATG 2 cut(s) 106, 190
FokI GGATG 1 cut(s) 128
GsaI CCCAGC 1 cut(s) 169
Hin1II CATG 2 cut(s) 110, 194
HinfI GANTC 1 cut(s) 40
Hpy188I TCNGA 3 cut(s) 39, 133, 304
Hpy188III TCNNGA 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 3
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4V TGCA 2 cut(s) 92, 106
Hsp92II CATG 2 cut(s) 110, 194
LpnPI CCDG 3 cut(s) 179, 237, 272
LweI GCATC 1 cut(s) 79
MaeIII GTNAC 1 cut(s) 41
MluCI AATT 5 cut(s) 78, 119, 196, 217, 245
MlyI GAGTC 1 cut(s) 49
MnlI CCTC 3 cut(s) 45, 200, 243
MroXI GAANNNNTTC 1 cut(s) 143
MseI TTAA 3 cut(s) 14, 56, 203
MslI CAYNNNNRTG 1 cut(s) 26
MspCI CTTAAG 1 cut(s) 55
Mva1269I GAATGC 1 cut(s) 185
NcoI CCATGG 1 cut(s) 190
NlaIII CATG 2 cut(s) 110, 194
NmuCI GTSAC 1 cut(s) 41
NspI RCATGY 1 cut(s) 110
PctI GAATGC 1 cut(s) 185
PdmI GAANNNNTTC 1 cut(s) 143
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
PspFI CCCAGC 1 cut(s) 165
RseI CAYNNNNRTG 1 cut(s) 26
SaqAI TTAA 3 cut(s) 14, 56, 203
SchI GAGTC 1 cut(s) 49
SetI ASST 3 cut(s) 14, 159, 171
SfaNI GCATC 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
Sse9I AATT 5 cut(s) 78, 119, 196, 217, 245
StyI CCWWGG 1 cut(s) 190
TaaI ACNGT 1 cut(s) 263
TaqI TCGA 1 cut(s) 243
TasI AATT 5 cut(s) 78, 119, 196, 217, 245
Tru1I TTAA 3 cut(s) 14, 56, 203
Tru9I TTAA 3 cut(s) 14, 56, 203
TseFI GTSAC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 4 cut(s) 17, 44, 132, 136
Vha464I CTTAAG 1 cut(s) 55
XapI RAATTY 2 cut(s) 78, 196
XceI RCATGY 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.