Rmu_sc0021925.1_g000002

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021925.1
OG0000891
Physical Location & Seq
Reverse (-)
2777 .. 5578
2802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021925.1_g000002.1.cds

Sequence Viewer

Length: 792 bp
atgatggtgtttgactggtggagcatgctagatttgagcagaaagtcgaggtcctggaactggttactgagggactcggcggccatgttgatgtcgggccttgaggcgctggagagtggagaggaggttggggaggagagtgtagagaaagggttctcagccccatgcagggagtcgaagatgtcagcgacggaggtcttgtgggaggcgagcttggagtggaaggatcggacggtggtgctctacattggggtggggtgggtcgggttcgggtgggagtttggttcccttggcactggaatactacctggtgcctcaatgagaccaagagaccgtgcagtaaatttgcttggaaaggctagtgttgccaagctggaaactttggtatctgtatcgactgacaggctggagctaagggtctacggtttcaatgacaagcttccagctctgttgtcaaagattctgataacaaccaaacgtttcatgccaatttctgattgttttatgagattgtatgatgttgatgagaagttgcacattttaagtggactttctatttctgatgtgaagtcatttattcctcagctttggtccaaggtgtacattgaaggcctctgtcatggaaatttgtcagaaaaagaagcaatcaggctttcagatatatttaaaacaaattttggtgtacaaccacttccaattgaactgatgcatagtgaacagtgtatttgtcttcctcctgctgctaacctcattagagatgtcagtgtgaagaataagtctgaaacaaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

263

Amino Acids

29.54

Weight (kDa)

5.57

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 311
AccI GTMKAC 1 cut(s) 420
AciI CCGC 1 cut(s) 80
AclI AACGTT 1 cut(s) 478
AclWI GGATC 1 cut(s) 234
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 3 cut(s) 343, 625, 673
AfaI GTAC 2 cut(s) 602, 684
AfiI CCNNNNNNNGG 3 cut(s) 60, 168, 169
AgsI TTSAA 3 cut(s) 430, 608, 701
AjnI CCWGG 2 cut(s) 53, 307
AluBI AGCT 6 cut(s) 213, 373, 412, 439, 446, 586
AluI AGCT 6 cut(s) 213, 373, 412, 439, 446, 586
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 2 cut(s) 316, 324
AlwI GGATC 1 cut(s) 234
AoxI GGCC 3 cut(s) 81, 97, 610
ApeKI GCWGC 1 cut(s) 740
ApoI RAATTY 3 cut(s) 343, 625, 673
Asp700I GAANNNNTTC 1 cut(s) 152
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 3 cut(s) 51, 97, 591
AvaII GGWCC 2 cut(s) 51, 591
BaeI ACNNNNGTAYC 2 cut(s) 369, 402
BanI GGYRCC 1 cut(s) 311
BarI GAAGNNNNNNTAC 2 cut(s) 675, 707
BbsI GAAGAC 1 cut(s) 722
Bbv12I GWGCWC 1 cut(s) 243
BbvCI CCTCAGC 1 cut(s) 582
BbvI GCAGC 1 cut(s) 727
BciT130I CCWGG 2 cut(s) 55, 309
BcoDI GTCTC 2 cut(s) 316, 324
BfaI CTAG 2 cut(s) 29, 360
BfoI RGCGCY 1 cut(s) 110
BisI GCNGC 2 cut(s) 81, 741
BlsI GCNGC 2 cut(s) 82, 742
Bme1390I CCNGG 2 cut(s) 55, 309
Bme18I GGWCC 2 cut(s) 51, 591
BmgT120I GGNCC 3 cut(s) 51, 97, 591
BmiI GGNNCC 2 cut(s) 286, 313
BmrFI CCNGG 2 cut(s) 55, 309
BmsI GCATC 1 cut(s) 696
BoxI GACNNNNGTC 1 cut(s) 194
BpiI GAAGAC 1 cut(s) 722
BpmI CTGGAG 2 cut(s) 131, 428
Bpu10I CCTNAGC 2 cut(s) 413, 582
BpuEI CTTGAG 1 cut(s) 122
BsaI GGTCTC 2 cut(s) 316, 324
BsaJI CCNNGG 2 cut(s) 289, 594
BsaXI ACNNNNNCTCC 4 cut(s) 111, 141, 185, 215
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 168, 169
Bse1I ACTGG 3 cut(s) 20, 65, 301
BseBI CCWGG 2 cut(s) 55, 309
BseDI CCNNGG 2 cut(s) 289, 594
BseLI CCNNNNNNNGG 3 cut(s) 60, 168, 169
BseMII CTCAG 3 cut(s) 59, 171, 596
BseNI ACTGG 3 cut(s) 20, 65, 301
BseRI GAGGAG 2 cut(s) 137, 149
BseXI GCAGC 1 cut(s) 727
BsgI GTGCAG 1 cut(s) 357
BshFI GGCC 3 cut(s) 83, 99, 612
BshNI GGYRCC 1 cut(s) 311
BsiHKAI GWGCWC 1 cut(s) 243
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 3 cut(s) 60, 168, 169
BsmAI GTCTC 2 cut(s) 316, 324
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 3 cut(s) 83, 99, 612
Bso31I GGTCTC 2 cut(s) 316, 324
Bsp1286I GDGCHC 1 cut(s) 243
Bsp1407I TGTACA 2 cut(s) 600, 682
Bsp143I GATC 1 cut(s) 226
BspACI CCGC 1 cut(s) 80
BspANI GGCC 3 cut(s) 83, 99, 612
BspCNI CTCAG 3 cut(s) 60, 170, 595
BspLI GGNNCC 2 cut(s) 286, 313
BspPI GGATC 1 cut(s) 234
BspT107I GGYRCC 1 cut(s) 311
BspTNI GGTCTC 2 cut(s) 316, 324
BsrGI TGTACA 2 cut(s) 600, 682
BsrI ACTGG 3 cut(s) 20, 65, 301
BssECI CCNNGG 2 cut(s) 289, 594
BssMI GATC 1 cut(s) 226
BssT1I CCWWGG 2 cut(s) 289, 594
Bst2UI CCWGG 2 cut(s) 55, 309
Bst4CI ACNGT 4 cut(s) 235, 335, 425, 720
BstAUI TGTACA 2 cut(s) 600, 682
BstC8I GCNNGC 2 cut(s) 26, 211
BstDEI CTNAG 4 cut(s) 68, 157, 413, 582
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 2 cut(s) 316, 324
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstNI CCWGG 2 cut(s) 55, 309
BstNSI RCATGY 1 cut(s) 28
BstPAI GACNNNNGTC 1 cut(s) 194
BstSCI CCNGG 2 cut(s) 53, 307
BstV1I GCAGC 1 cut(s) 727
BstV2I GAAGAC 1 cut(s) 722
BsuRI GGCC 3 cut(s) 83, 99, 612
BtsIMutI CAGTG 3 cut(s) 294, 725, 769
Cac8I GCNNGC 2 cut(s) 26, 211
CfoI GCGC 1 cut(s) 109
Cfr13I GGNCC 3 cut(s) 51, 97, 591
CsiI ACCWGGT 1 cut(s) 307
Csp6I GTAC 2 cut(s) 601, 683
CviAII CATG 5 cut(s) 25, 85, 165, 484, 620
CviQI GTAC 2 cut(s) 601, 683
DdeI CTNAG 4 cut(s) 68, 157, 413, 582
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
DraI TTTAAA 1 cut(s) 667
EaeI YGGCCR 1 cut(s) 81
Eco130I CCWWGG 2 cut(s) 289, 594
Eco147I AGGCCT 1 cut(s) 612
Eco31I GGTCTC 2 cut(s) 316, 324
Eco47I GGWCC 2 cut(s) 51, 591
EcoO109I RGGNCCY 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 53, 307
EcoT14I CCWWGG 2 cut(s) 289, 594
EcoT22I ATGCAT 1 cut(s) 711
ErhI CCWWGG 2 cut(s) 289, 594
FaeI CATG 5 cut(s) 28, 88, 168, 487, 623
FaiI YATR 9 cut(s) 26, 86, 166, 485, 506, 516, 621, 662, 711
FaqI GGGAC 1 cut(s) 86
FatI CATG 5 cut(s) 24, 84, 164, 483, 619
FblI GTMKAC 1 cut(s) 420
Fnu4HI GCNGC 2 cut(s) 81, 741
Fsp4HI GCNGC 2 cut(s) 81, 741
FspBI CTAG 2 cut(s) 29, 360
GlaI GCGC 1 cut(s) 108
GluI GCNGC 2 cut(s) 81, 741
GsuI CTGGAG 2 cut(s) 131, 428
HaeII RGCGCY 1 cut(s) 110
HaeIII GGCC 3 cut(s) 83, 99, 612
HhaI GCGC 1 cut(s) 109
Hin1II CATG 5 cut(s) 28, 88, 168, 487, 623
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 3 cut(s) 74, 173, 460
Hpy166II GTNNAC 5 cut(s) 421, 548, 601, 683, 716
Hpy188I TCNGA 7 cut(s) 231, 465, 496, 562, 634, 658, 781
Hpy8I GTNNAC 5 cut(s) 421, 548, 601, 683, 716
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 2 cut(s) 217, 602
HpyCH4III ACNGT 4 cut(s) 235, 335, 425, 720
HpyCH4IV ACGT 1 cut(s) 478
HpyCH4V TGCA 4 cut(s) 168, 338, 535, 709
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
HpyF3I CTNAG 4 cut(s) 68, 157, 413, 582
HpySE526I ACGT 1 cut(s) 478
Hsp92II CATG 5 cut(s) 28, 88, 168, 487, 623
HspAI GCGC 1 cut(s) 107
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 2 cut(s) 21, 409
Lsp1109I GCAGC 1 cut(s) 727
LweI GCATC 1 cut(s) 696
MabI ACCWGGT 1 cut(s) 307
MaeI CTAG 2 cut(s) 29, 360
MaeII ACGT 1 cut(s) 478
MaeIII GTNAC 1 cut(s) 63
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 3 cut(s) 190, 722, 781
MfeI CAATTG 1 cut(s) 696
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 6 cut(s) 343, 489, 625, 673, 696, 787
MlyI GAGTC 2 cut(s) 68, 182
Mph1103I ATGCAT 1 cut(s) 711
MroXI GAANNNNTTC 1 cut(s) 152
MseI TTAA 2 cut(s) 542, 666
MslI CAYNNNNRTG 2 cut(s) 89, 251
MspR9I CCNGG 2 cut(s) 55, 309
MunI CAATTG 1 cut(s) 696
MvaI CCWGG 2 cut(s) 55, 309
MwoI GCNNNNNNNGC 1 cut(s) 365
NdeII GATC 1 cut(s) 226
NlaIII CATG 5 cut(s) 28, 88, 168, 487, 623
NlaIV GGNNCC 2 cut(s) 286, 313
NmeAIII GCCGAG 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 711
NspI RCATGY 1 cut(s) 28
PaeI GCATGC 1 cut(s) 28
PceI AGGCCT 1 cut(s) 612
PdmI GAANNNNTTC 1 cut(s) 152
PfeI GAWTC 1 cut(s) 460
PfoI TCCNGGA 1 cut(s) 53
PkrI GCNGC 2 cut(s) 82, 742
PleI GAGTC 2 cut(s) 68, 181
PpsI GAGTC 2 cut(s) 68, 181
PpuMI RGGWCCY 1 cut(s) 51
PshAI GACNNNNGTC 1 cut(s) 194
Psp1406I AACGTT 1 cut(s) 478
Psp5II RGGWCCY 1 cut(s) 51
Psp6I CCWGG 2 cut(s) 53, 307
PspGI CCWGG 2 cut(s) 53, 307
PspN4I GGNNCC 2 cut(s) 286, 313
PspPI GGNCC 3 cut(s) 51, 97, 591
PspPPI RGGWCCY 1 cut(s) 51
RsaI GTAC 2 cut(s) 602, 684
RsaNI GTAC 2 cut(s) 601, 683
RseI CAYNNNNRTG 2 cut(s) 89, 251
SaqAI TTAA 2 cut(s) 542, 666
SatI GCNGC 2 cut(s) 81, 741
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 3 cut(s) 51, 97, 591
SchI GAGTC 2 cut(s) 68, 182
ScrFI CCNGG 2 cut(s) 55, 309
SduI GDGCHC 1 cut(s) 243
SexAI ACCWGGT 1 cut(s) 307
SfaNI GCATC 1 cut(s) 696
SinI GGWCC 2 cut(s) 51, 591
SmiMI CAYNNNNRTG 2 cut(s) 89, 251
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
SphI GCATGC 1 cut(s) 28
Sse9I AATT 6 cut(s) 343, 489, 625, 673, 696, 787
SseBI AGGCCT 1 cut(s) 612
SsiI CCGC 1 cut(s) 80
SspMI CTAG 2 cut(s) 29, 360
StuI AGGCCT 1 cut(s) 612
StyD4I CCNGG 2 cut(s) 53, 307
StyI CCWWGG 2 cut(s) 289, 594
TaaI ACNGT 4 cut(s) 235, 335, 425, 720
TaiI ACGT 1 cut(s) 481
TaqI TCGA 3 cut(s) 47, 176, 395
TasI AATT 6 cut(s) 343, 489, 625, 673, 696, 787
TatI WGTACW 2 cut(s) 600, 682
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 1 cut(s) 460
Tru1I TTAA 2 cut(s) 542, 666
Tru9I TTAA 2 cut(s) 542, 666
TscAI CASTG 3 cut(s) 301, 725, 769
TseI GCWGC 1 cut(s) 740
TspDTI ATGAA 1 cut(s) 472
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 3 cut(s) 301, 725, 769
VpaK11BI GGWCC 2 cut(s) 51, 591
XapI RAATTY 3 cut(s) 343, 625, 673
XceI RCATGY 1 cut(s) 28
XmiI GTMKAC 1 cut(s) 420
XmnI GAANNNNTTC 1 cut(s) 152
XspI CTAG 2 cut(s) 29, 360
Zsp2I ATGCAT 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.