Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000891

Physical Location & Seq

Genomic Coordinates Forward (+)

24527419 .. 24534513

Gene Structure 7095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG130000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGACAAGTACGAGAAAGTAGAGAAGATTGGGGAAGGAACTTATGGCGTGGTTTACAAGGCTCGTGATCGTCTCACCAATGAAACCATAGCTTTGAAGAAGATTCGGTTGGAGCAGGAAGATGAGGGCGTCCCAAGCACTGCCATTAGAGAAATTTCTCTCTTGAAAGAAATGCAGCATGCCAACATTGTCAGGTTACAGGATGTTGTGCATAGTGAGAAGCACTTGTATCTGGTGTTTGAGTACCTGGACTTGGATTTGAAGAAGTATATGGATTCTTCTCCTGAATTTGCAAAGGATCCTCGCCAGATAAAAAAAATGCTCTGCTTGGATCCGAGCAAAAGAATTACGGCAAGGGGTGCTCTTGAGCATGAATACTTCAAAGATATTCCATTTGTTCCCCGAGTCATTTCTTCCCATTATGGCAGTAAGTCTCGGAATGAGAGAAGCCTGTACCGATTAATCAAGCTCGAGAATGGCCTCACTGCATTGCTAGTTCACGATCCTGAGATTGGAGAATCCCAACTCTCCGAGGGCTCTGAGGAAGACGACGATAGTGAAGGGGAGGATGAAGATGAACTGAATAAGAAAAAGGGAGGGGATTCTCGGACTAACAAGGCAGCAGCAGCAATGTGTGTAGCAATAGGCAGCTTCTCTGACCCTCCTGAGGCACAGGGGCTTGCACACTTTCTAGAACACATGCTTTTCATGGGGAGTACAGAATTTCCAGATGAAAATGAGTTAGTTACTTATCTAAGCACGGAGGGTGTTCAAATCCTTATGCAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030154 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0072686 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1903047 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

263

Amino Acids

29.89

Weight (kDa)

5.06

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 92	3.6e-23	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 105	1.2e-12	Protein tyrosine and serine/threonine kinase
Peptidase_M16	PF00675	203 - 258	1e-13	Insulinase (Peptidase family M16)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06900
fragaria_vesca	FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361
malus_domestica	MD03G1052300.v1.1 MD10G1074700.v1.1 MD11G1054400.v1.1 MD17G1069300.v1.1
prunus_persica	Prupe.6G041800_v2.0.a1 Prupe.6G041900_v2.0.a1 Prupe.6G041900_v2.0.a1
pyrus_communis	pycom03g04160 pycom11g04420 pycom11g04430 pycom16g23220 pycom16g23230
rosa_chinensis	RchiOBHm_Chr1g0322391 RchiOBHm_Chr1g0322401 RchiOBHm_Chr1g0322811 RchiOBHm_Chr1g0333061 RchiOBHm_Chr1g0333871 RchiOBHm_Chr1g0333951 RchiOBHm_Chr1g0335141 RchiOBHm_Chr1g0369151 RchiOBHm_Chr5g0072551 RchiOBHm_Chr5g0072781 RchiOBHm_Chr5g0072801 RchiOBHm_Chr5g0072811 RchiOBHm_Chr5g0074171
rosa_laevigata	RLG00000022738 RLG00000029400 RLG00000029495 RLG00000029524 RLG00000030375 RLG00000030390
rosa_multiflora	Rmu_sc0003160.1_g000024 Rmu_sc0005069.1_g000001 Rmu_sc0007177.1_g000010 Rmu_sc0021925.1_g000002
rosa_roxburghii	Rroxscaffold_1G00008380 Rroxscaffold_5G00333240
rosa_rugosa	Rorug01G0112100 Rorug01G0119300 Rorug01G0120000 Rorug01G0120300 Rorug01G0489500 Rorug05G0420300 Rorug05G0429400
rosa_samantha	Rh1AG130000 Rh1CG123800 Rh1CG133900 Rh1DG135600 Rh1DG140200 Rh3BG342500 Rh3BG342600 Rh5AG470900 Rh5AG477000 Rh5CG520900 Rh5DG509700 Rh5DG509800
rosa_wichuraiana	Rw0G011760 Rw1G011290 Rw5G044290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	293, 306, 326, 339, 497
AcsI	RAATTY	3 cut(s)	153, 287, 722
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	4 cut(s)	11, 245, 455, 718
AfiI	CCNNNNNNNGG	3 cut(s)	253, 512, 667
AgsI	TTSAA	5 cut(s)	97, 166, 262, 382, 773
AjnI	CCWGG	1 cut(s)	246
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	3 cut(s)	92, 469, 651
AluI	AGCT	3 cut(s)	92, 469, 651
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	2 cut(s)	77, 438
AlwI	GGATC	5 cut(s)	293, 306, 326, 339, 497
Ama87I	CYCGRG	2 cut(s)	402, 470
AoxI	GGCC	1 cut(s)	478
ApeKI	GCWGC	5 cut(s)	175, 620, 623, 626, 648
ApoI	RAATTY	3 cut(s)	153, 287, 722
AseI	ATTAAT	1 cut(s)	461
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	2 cut(s)	402, 470
AxyI	CCTNAGG	1 cut(s)	666
BamHI	GGATCC	2 cut(s)	298, 331
BanII	GRGCYC	1 cut(s)	539
BauI	CACGAG	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	5 cut(s)	187, 632, 635, 638, 660
BceAI	ACGGC	1 cut(s)	366
BciT130I	CCWGG	1 cut(s)	248
BcoDI	GTCTC	2 cut(s)	77, 438
BfaI	CTAG	2 cut(s)	494, 692
BisI	GCNGC	5 cut(s)	176, 621, 624, 627, 649
BlsI	GCNGC	5 cut(s)	177, 622, 625, 628, 650
Bme1390I	CCNGG	1 cut(s)	248
BmeT110I	CYCGRG	2 cut(s)	402, 470
BmiI	GGNNCC	2 cut(s)	300, 333
BmrFI	CCNGG	1 cut(s)	248
BpiI	GAAGAC	1 cut(s)	552
BpuEI	CTTGAG	1 cut(s)	386
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	531
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 512, 667
Bse21I	CCTNAGG	1 cut(s)	666
Bse3DI	GCAATG	2 cut(s)	488, 636
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	531
BseGI	GGATG	2 cut(s)	208, 574
BseLI	CCNNNNNNNGG	3 cut(s)	253, 512, 667
BseMI	GCAATG	2 cut(s)	488, 636
BseMII	CTCAG	3 cut(s)	498, 531, 657
BseXI	GCAGC	5 cut(s)	187, 632, 635, 638, 660
BshFI	GGCC	1 cut(s)	480
BsiHKAI	GWGCWC	1 cut(s)	364
BsiHKCI	CYCGRG	2 cut(s)	402, 470
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	3 cut(s)	253, 512, 667
BsmAI	GTCTC	2 cut(s)	77, 438
BsmBI	CGTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	480
BsoBI	CYCGRG	2 cut(s)	402, 470
Bsp1286I	GDGCHC	2 cut(s)	364, 539
Bsp143I	GATC	4 cut(s)	67, 298, 331, 502
BspANI	GGCC	1 cut(s)	480
BspCNI	CTCAG	3 cut(s)	499, 532, 658
BspLI	GGNNCC	2 cut(s)	300, 333
BspPI	GGATC	5 cut(s)	293, 306, 326, 339, 497
BsrDI	GCAATG	2 cut(s)	488, 636
BssECI	CCNNGG	1 cut(s)	531
BssMI	GATC	4 cut(s)	67, 298, 331, 502
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	248
BstACI	GRCGYC	1 cut(s)	129
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	180, 681
BstDEI	CTNAG	4 cut(s)	507, 540, 666, 755
BstF5I	GGATG	2 cut(s)	208, 574
BstKTI	GATC	4 cut(s)	70, 301, 334, 505
BstMAI	GTCTC	2 cut(s)	77, 438
BstMBI	GATC	4 cut(s)	67, 298, 331, 502
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 359, 626
BstNI	CCWGG	1 cut(s)	248
BstNSI	RCATGY	2 cut(s)	182, 703
BstSCI	CCNGG	1 cut(s)	246
BstV1I	GCAGC	5 cut(s)	187, 632, 635, 638, 660
BstV2I	GAAGAC	1 cut(s)	552
BstX2I	RGATCY	2 cut(s)	298, 331
BstYI	RGATCY	2 cut(s)	298, 331
Bsu36I	CCTNAGG	1 cut(s)	666
BsuRI	GGCC	1 cut(s)	480
BtsCI	GGATG	2 cut(s)	208, 574
BtsI	GCAGTG	2 cut(s)	138, 483
BtsIMutI	CAGTG	2 cut(s)	138, 483
Cac8I	GCNNGC	2 cut(s)	180, 681
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	4 cut(s)	10, 244, 454, 717
CviAII	CATG	4 cut(s)	179, 371, 700, 709
CviJI	RGCY	8 cut(s)	62, 92, 450, 469, 480, 537, 651, 679
CviKI_1	RGCY	8 cut(s)	62, 92, 450, 469, 480, 537, 651, 679
CviQI	GTAC	4 cut(s)	10, 244, 454, 717
DdeI	CTNAG	4 cut(s)	507, 540, 666, 755
DpnI	GATC	4 cut(s)	69, 300, 333, 504
DpnII	GATC	4 cut(s)	67, 298, 331, 502
Eco24I	GRGCYC	1 cut(s)	539
Eco81I	CCTNAGG	1 cut(s)	666
Eco88I	CYCGRG	2 cut(s)	402, 470
EcoRII	CCWGG	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	539
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	4 cut(s)	182, 374, 703, 712
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	4 cut(s)	178, 370, 699, 708
Fnu4HI	GCNGC	5 cut(s)	176, 621, 624, 627, 649
FokI	GGATG	2 cut(s)	215, 581
FriOI	GRGCYC	1 cut(s)	539
Fsp4HI	GCNGC	5 cut(s)	176, 621, 624, 627, 649
FspBI	CTAG	2 cut(s)	494, 692
GluI	GCNGC	5 cut(s)	176, 621, 624, 627, 649
HaeIII	GGCC	1 cut(s)	480
HgaI	GACGC	1 cut(s)	118
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	4 cut(s)	182, 374, 703, 712
HinfI	GANTC	5 cut(s)	103, 275, 405, 518, 602
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	2 cut(s)	55, 499
Hpy188I	TCNGA	6 cut(s)	336, 438, 532, 541, 609, 658
Hpy8I	GTNNAC	2 cut(s)	55, 499
Hpy99I	CGWCG	1 cut(s)	554
HpyAV	CCTTC	2 cut(s)	29, 554
HpyCH4V	TGCA	6 cut(s)	175, 211, 293, 488, 683, 784
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 359, 626
HpyF3I	CTNAG	4 cut(s)	507, 540, 666, 755
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	4 cut(s)	182, 374, 703, 712
Kzo9I	GATC	4 cut(s)	67, 298, 331, 502
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	5 cut(s)	187, 632, 635, 638, 660
MaeI	CTAG	2 cut(s)	494, 692
MaeIII	GTNAC	2 cut(s)	195, 745
MalI	GATC	4 cut(s)	69, 300, 333, 504
MboI	GATC	4 cut(s)	67, 298, 331, 502
MboII	GAAGA	9 cut(s)	37, 109, 112, 131, 270, 274, 405, 557, 584
MflI	RGATCY	2 cut(s)	298, 331
MhlI	GDGCHC	2 cut(s)	364, 539
MluCI	AATT	4 cut(s)	153, 287, 345, 722
MlyI	GAGTC	1 cut(s)	414
MmeI	TCCRAC	1 cut(s)	90
MseI	TTAA	1 cut(s)	461
MspR9I	CCNGG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	3 cut(s)	135, 359, 626
NdeII	GATC	4 cut(s)	67, 298, 331, 502
NlaIII	CATG	4 cut(s)	182, 374, 703, 712
NlaIV	GGNNCC	2 cut(s)	300, 333
NspI	RCATGY	2 cut(s)	182, 703
PaeI	GCATGC	1 cut(s)	182
PaeR7I	CTCGAG	1 cut(s)	470
PfeI	GAWTC	4 cut(s)	103, 275, 518, 602
PkrI	GCNGC	5 cut(s)	177, 622, 625, 628, 650
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
PshBI	ATTAAT	1 cut(s)	461
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	2 cut(s)	300, 333
PsuI	RGATCY	2 cut(s)	298, 331
RsaI	GTAC	4 cut(s)	11, 245, 455, 718
RsaNI	GTAC	4 cut(s)	10, 244, 454, 717
SaqAI	TTAA	1 cut(s)	461
SatI	GCNGC	5 cut(s)	176, 621, 624, 627, 649
Sau3AI	GATC	4 cut(s)	67, 298, 331, 502
SchI	GAGTC	1 cut(s)	414
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	2 cut(s)	364, 539
SetI	ASST	5 cut(s)	94, 197, 249, 471, 653
Sfr274I	CTCGAG	1 cut(s)	470
SlaI	CTCGAG	1 cut(s)	470
SmlI	CTYRAG	2 cut(s)	365, 470
SmoI	CTYRAG	2 cut(s)	365, 470
SphI	GCATGC	1 cut(s)	182
Sse9I	AATT	4 cut(s)	153, 287, 345, 722
SspMI	CTAG	2 cut(s)	494, 692
StyD4I	CCNGG	1 cut(s)	246
TaqI	TCGA	1 cut(s)	471
TasI	AATT	4 cut(s)	153, 287, 345, 722
TatI	WGTACW	1 cut(s)	716
TfiI	GAWTC	4 cut(s)	103, 275, 518, 602
Tru1I	TTAA	1 cut(s)	461
Tru9I	TTAA	1 cut(s)	461
TscAI	CASTG	2 cut(s)	145, 490
TseI	GCWGC	5 cut(s)	175, 620, 623, 626, 648
TspDTI	ATGAA	6 cut(s)	96, 387, 585, 591, 697, 747
TspGWI	ACGGA	1 cut(s)	776
TspRI	CASTG	2 cut(s)	145, 490
VspI	ATTAAT	1 cut(s)	461
XapI	RAATTY	3 cut(s)	153, 287, 722
XbaI	TCTAGA	1 cut(s)	691
XceI	RCATGY	2 cut(s)	182, 703
XhoI	CTCGAG	1 cut(s)	470
XspI	CTAG	2 cut(s)	494, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.