Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000891

Physical Location & Seq

Genomic Coordinates Forward (+)

28436967 .. 28440398

Gene Structure 3432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG135600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGTCAGCGACGGAGGTCTGGTGGGAGGCAGCAGCAGCAATGTGGGTAGGAATAGGCAGCTTCTCTGACCCTCCTGAGGCACAGGGGCTTGCACACTTTCTAGAACACATGCTTTTCATGGGGAGTACGGAATTTCCAGATGAAAATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

50

Amino Acids

5.56

Weight (kDa)

4.05

Isoelectric Point (pI)

25.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M16	PF00675	10 - 49	1.2e-12	Insulinase (Peptidase family M16)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06900
fragaria_vesca	FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361
malus_domestica	MD03G1052300.v1.1 MD10G1074700.v1.1 MD11G1054400.v1.1 MD17G1069300.v1.1
prunus_persica	Prupe.6G041800_v2.0.a1 Prupe.6G041900_v2.0.a1 Prupe.6G041900_v2.0.a1
pyrus_communis	pycom03g04160 pycom11g04420 pycom11g04430 pycom16g23220 pycom16g23230
rosa_chinensis	RchiOBHm_Chr1g0322391 RchiOBHm_Chr1g0322401 RchiOBHm_Chr1g0322811 RchiOBHm_Chr1g0333061 RchiOBHm_Chr1g0333871 RchiOBHm_Chr1g0333951 RchiOBHm_Chr1g0335141 RchiOBHm_Chr1g0369151 RchiOBHm_Chr5g0072551 RchiOBHm_Chr5g0072781 RchiOBHm_Chr5g0072801 RchiOBHm_Chr5g0072811 RchiOBHm_Chr5g0074171
rosa_laevigata	RLG00000022738 RLG00000029400 RLG00000029495 RLG00000029524 RLG00000030375 RLG00000030390
rosa_multiflora	Rmu_sc0003160.1_g000024 Rmu_sc0005069.1_g000001 Rmu_sc0007177.1_g000010 Rmu_sc0021925.1_g000002
rosa_roxburghii	Rroxscaffold_1G00008380 Rroxscaffold_5G00333240
rosa_rugosa	Rorug01G0112100 Rorug01G0119300 Rorug01G0120000 Rorug01G0120300 Rorug01G0489500 Rorug05G0420300 Rorug05G0429400
rosa_samantha	Rh1AG130000 Rh1CG123800 Rh1CG133900 Rh1DG135600 Rh1DG140200 Rh3BG342500 Rh3BG342600 Rh5AG470900 Rh5AG477000 Rh5CG520900 Rh5DG509700 Rh5DG509800
rosa_wichuraiana	Rw0G011760 Rw1G011290 Rw5G044290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	131
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	76
AluBI	AGCT	1 cut(s)	60
AluI	AGCT	1 cut(s)	60
ApeKI	GCWGC	4 cut(s)	29, 32, 35, 57
ApoI	RAATTY	1 cut(s)	131
AxyI	CCTNAGG	1 cut(s)	75
BbvI	GCAGC	4 cut(s)	41, 44, 47, 69
BfaI	CTAG	1 cut(s)	101
BisI	GCNGC	4 cut(s)	30, 33, 36, 58
BlsI	GCNGC	4 cut(s)	31, 34, 37, 59
BoxI	GACNNNNGTC	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse21I	CCTNAGG	1 cut(s)	75
Bse3DI	GCAATG	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	66
BseXI	GCAGC	4 cut(s)	41, 44, 47, 69
BslI	CCNNNNNNNGG	1 cut(s)	76
BspCNI	CTCAG	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	112
BstPAI	GACNNNNGTC	1 cut(s)	14
BstV1I	GCAGC	4 cut(s)	41, 44, 47, 69
Bsu36I	CCTNAGG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	2 cut(s)	109, 118
CviJI	RGCY	2 cut(s)	60, 88
CviKI_1	RGCY	2 cut(s)	60, 88
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	1 cut(s)	75
Eco81I	CCTNAGG	1 cut(s)	75
FaeI	CATG	2 cut(s)	112, 121
FaiI	YATR	2 cut(s)	110, 119
FatI	CATG	2 cut(s)	108, 117
Fnu4HI	GCNGC	4 cut(s)	30, 33, 36, 58
Fsp4HI	GCNGC	4 cut(s)	30, 33, 36, 58
FspBI	CTAG	1 cut(s)	101
GluI	GCNGC	4 cut(s)	30, 33, 36, 58
Hin1II	CATG	2 cut(s)	112, 121
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	3 cut(s)	74, 101, 137
Hpy99I	CGWCG	1 cut(s)	13
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	112, 121
LpnPI	CCDG	3 cut(s)	4, 68, 87
Lsp1109I	GCAGC	4 cut(s)	41, 44, 47, 69
MaeI	CTAG	1 cut(s)	101
MluCI	AATT	1 cut(s)	131
MnlI	CCTC	4 cut(s)	7, 19, 70, 81
MwoI	GCNNNNNNNGC	1 cut(s)	35
NlaIII	CATG	2 cut(s)	112, 121
NspI	RCATGY	1 cut(s)	112
PkrI	GCNGC	4 cut(s)	31, 34, 37, 59
PshAI	GACNNNNGTC	1 cut(s)	14
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SatI	GCNGC	4 cut(s)	30, 33, 36, 58
SetI	ASST	2 cut(s)	18, 62
SgeI	CNNG	8 cut(s)	31, 86, 95, 101, 113, 121, 130, 149
Sse9I	AATT	1 cut(s)	131
SspMI	CTAG	1 cut(s)	101
TasI	AATT	1 cut(s)	131
TseI	GCWGC	4 cut(s)	29, 32, 35, 57
TspDTI	ATGAA	1 cut(s)	106
TspGWI	ACGGA	2 cut(s)	26, 143
XapI	RAATTY	1 cut(s)	131
XbaI	TCTAGA	1 cut(s)	100
XceI	RCATGY	1 cut(s)	112
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.