Rh5CG520900

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000891
Physical Location & Seq
Reverse (-)
72864535 .. 72878258
13724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG520900.1

Sequence Viewer

Length: 570 bp
ATGGAGCGGGAGGTACAGGCTGTAGATTCAGAGTTTAACCAGGTTCAGCAGAACGATGCTTGCCGCCTTGAACAACTTCAATGCCATACAGCCTCACCTGGTCACCCATTTAATAGATTCGCATGGGGGAATAAAAAAAGCTTGAGCAATGCCATGGAAAAAGGGATCAACTTGCGGGAACAAATATTGAAATTGTACAGAGATTATTACCATGGTGGATTGATGAAGCTAGTTGTCATAGGAGGAGCGGTAGCATTTGGAGTTGGTGTGGGTTTTAAAGACGGCGTTTGCAAGGCAACCGAGTTTTTTGCCGGGTATTTACTGGAGCAAAGTTTGTCAGTGGACAACTTGTTTGTGTTTGTTCTGATTTTCAAGTACTTCAAAGTGCCACTTATGTATCAGGCACGACTTCAGGTTTCTGAAGTGGTTCTCGAGCAGATAAGGCAATTTAACCACCTTGATTTGGAGCTTTATAAATATGCAAAGGATATCTTTACAAAGCGACACAAGCATGCAGTGCAAGCTTTTGGGAGTTCAGACAGATGGGAGAGTATCCGGAGTCCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

189

Amino Acids

21.7

Weight (kDa)

8.71

Isoelectric Point (pI)

43.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 474
AccBSI CCGCTC 2 cut(s) 7, 248
AccIII TCCGGA 1 cut(s) 555
AciI CCGC 4 cut(s) 7, 64, 175, 248
AclWI GGATC 1 cut(s) 173
AcuI CTGAAG 2 cut(s) 395, 441
AfaI GTAC 3 cut(s) 15, 197, 377
AfiI CCNNNNNNNGG 1 cut(s) 463
AgsI TTSAA 5 cut(s) 71, 80, 190, 373, 382
AjnI CCWGG 2 cut(s) 39, 97
AluBI AGCT 4 cut(s) 141, 229, 469, 524
AluI AGCT 4 cut(s) 141, 229, 469, 524
AlwI GGATC 1 cut(s) 173
Ama87I CYCGRG 1 cut(s) 431
Aor13HI TCCGGA 1 cut(s) 555
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
Asp700I GAANNNNTTC 2 cut(s) 75, 426
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 2 cut(s) 87, 95
AvaI CYCGRG 1 cut(s) 431
BaeI ACNNNNGTAYC 2 cut(s) 380, 413
BccI CCATC 1 cut(s) 537
BceAI ACGGC 1 cut(s) 298
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BciT130I CCWGG 2 cut(s) 41, 99
BciVI GTATCC 1 cut(s) 563
BcnI CCSGG 1 cut(s) 313
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 21
BfuI GTATCC 1 cut(s) 563
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
BmcAI AGTACT 1 cut(s) 377
Bme1390I CCNGG 3 cut(s) 41, 99, 313
BmeT110I CYCGRG 1 cut(s) 431
BmrFI CCNGG 3 cut(s) 41, 99, 313
BmsI GCATC 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 163
BpuMI CCSGG 1 cut(s) 313
BsaJI CCNNGG 2 cut(s) 153, 211
BsaWI WCCGGW 1 cut(s) 555
BsaXI ACNNNNNCTCC 4 cut(s) 234, 252, 264, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 463
Bse1I ACTGG 1 cut(s) 327
Bse3DI GCAATG 1 cut(s) 154
BseAI TCCGGA 1 cut(s) 555
BseBI CCWGG 2 cut(s) 41, 99
BseDI CCNNGG 2 cut(s) 153, 211
BseLI CCNNNNNNNGG 1 cut(s) 463
BseMI GCAATG 1 cut(s) 154
BseNI ACTGG 1 cut(s) 327
BseRI GAGGAG 1 cut(s) 258
BsiHKCI CYCGRG 1 cut(s) 431
BsiSI CCGG 2 cut(s) 312, 556
BslI CCNNNNNNNGG 1 cut(s) 463
BsoBI CYCGRG 1 cut(s) 431
Bsp13I TCCGGA 1 cut(s) 555
Bsp1407I TGTACA 1 cut(s) 195
Bsp143I GATC 1 cut(s) 165
Bsp19I CCATGG 2 cut(s) 153, 211
BspACI CCGC 4 cut(s) 7, 64, 175, 248
BspEI TCCGGA 1 cut(s) 555
BspPI GGATC 1 cut(s) 173
BsrBI CCGCTC 2 cut(s) 7, 248
BsrDI GCAATG 1 cut(s) 154
BsrGI TGTACA 1 cut(s) 195
BsrI ACTGG 1 cut(s) 327
BssECI CCNNGG 2 cut(s) 153, 211
BssMI GATC 1 cut(s) 165
BssT1I CCWWGG 2 cut(s) 153, 211
Bst2UI CCWGG 2 cut(s) 41, 99
BstAPI GCANNNNNTGC 1 cut(s) 517
BstAUI TGTACA 1 cut(s) 195
BstC8I GCNNGC 3 cut(s) 61, 513, 522
BstDSI CCRYGG 2 cut(s) 153, 211
BstEII GGTNACC 1 cut(s) 101
BstKTI GATC 1 cut(s) 168
BstMBI GATC 1 cut(s) 165
BstMWI GCNNNNNNNGC 4 cut(s) 442, 508, 517, 521
BstNI CCWGG 2 cut(s) 41, 99
BstNSI RCATGY 1 cut(s) 515
BstPI GGTNACC 1 cut(s) 101
BstSCI CCNGG 3 cut(s) 39, 97, 311
BstSFI CTRYAG 1 cut(s) 21
BsuI GTATCC 1 cut(s) 563
BtgI CCRYGG 2 cut(s) 153, 211
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 2 cut(s) 345, 522
Cac8I GCNNGC 3 cut(s) 61, 513, 522
CsiI ACCWGGT 2 cut(s) 39, 97
Csp6I GTAC 3 cut(s) 14, 196, 376
CviAII CATG 4 cut(s) 123, 154, 212, 512
CviJI RGCY 6 cut(s) 20, 92, 141, 229, 469, 524
CviKI_1 RGCY 6 cut(s) 20, 92, 141, 229, 469, 524
CviQI GTAC 3 cut(s) 14, 196, 376
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
DraI TTTAAA 1 cut(s) 277
Eco130I CCWWGG 2 cut(s) 153, 211
Eco32I GATATC 1 cut(s) 490
Eco57I CTGAAG 2 cut(s) 395, 441
Eco88I CYCGRG 1 cut(s) 431
Eco91I GGTNACC 1 cut(s) 101
EcoO65I GGTNACC 1 cut(s) 101
EcoRII CCWGG 2 cut(s) 39, 97
EcoRV GATATC 1 cut(s) 490
EcoT14I CCWWGG 2 cut(s) 153, 211
ErhI CCWWGG 2 cut(s) 153, 211
FaeI CATG 4 cut(s) 126, 157, 215, 515
FaiI YATR 9 cut(s) 87, 124, 155, 213, 239, 395, 474, 480, 513
FalI AAGNNNNNCTT 4 cut(s) 375, 407, 476, 508
FatI CATG 4 cut(s) 122, 153, 211, 511
FauI CCCGC 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 64
Fsp4HI GCNGC 1 cut(s) 64
FspBI CTAG 1 cut(s) 230
GluI GCNGC 1 cut(s) 64
GsuI CTGGAG 1 cut(s) 344
HapII CCGG 2 cut(s) 312, 556
Hin1II CATG 4 cut(s) 126, 157, 215, 515
HindIII AAGCTT 2 cut(s) 139, 522
HinfI GANTC 3 cut(s) 26, 117, 559
HpaII CCGG 2 cut(s) 312, 556
HphI GGTGA 2 cut(s) 87, 95
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 4 cut(s) 31, 366, 421, 538
Hpy188III TCNNGA 2 cut(s) 431, 556
Hpy8I GTNNAC 1 cut(s) 343
HpyCH4V TGCA 4 cut(s) 291, 482, 515, 520
HpyF10VI GCNNNNNNNGC 4 cut(s) 442, 508, 517, 521
Hsp92II CATG 4 cut(s) 126, 157, 215, 515
Kpn2I TCCGGA 1 cut(s) 555
Kzo9I GATC 1 cut(s) 165
LmnI GCTCC 4 cut(s) 4, 245, 325, 466
LpnPI CCDG 9 cut(s) 2, 26, 53, 84, 111, 308, 325, 386, 398
LweI GCATC 1 cut(s) 46
MabI ACCWGGT 2 cut(s) 39, 97
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 101
MalI GATC 1 cut(s) 167
MbiI CCGCTC 2 cut(s) 7, 248
MboI GATC 1 cut(s) 165
MluCI AATT 2 cut(s) 191, 446
MlyI GAGTC 1 cut(s) 568
MnlI CCTC 3 cut(s) 4, 103, 236
MroI TCCGGA 1 cut(s) 555
MroXI GAANNNNTTC 2 cut(s) 75, 426
MseI TTAA 4 cut(s) 36, 111, 276, 450
MslI CAYNNNNRTG 1 cut(s) 510
MspI CCGG 2 cut(s) 312, 556
MspR9I CCNGG 3 cut(s) 41, 99, 313
MvaI CCWGG 2 cut(s) 41, 99
MwoI GCNNNNNNNGC 4 cut(s) 442, 508, 517, 521
NciI CCSGG 1 cut(s) 313
NcoI CCATGG 2 cut(s) 153, 211
NdeII GATC 1 cut(s) 165
NlaIII CATG 4 cut(s) 126, 157, 215, 515
NmuCI GTSAC 1 cut(s) 101
NspI RCATGY 1 cut(s) 515
PaeI GCATGC 1 cut(s) 515
PaeR7I CTCGAG 1 cut(s) 431
PdmI GAANNNNTTC 2 cut(s) 75, 426
PfeI GAWTC 2 cut(s) 26, 117
PkrI GCNGC 1 cut(s) 65
PleI GAGTC 1 cut(s) 567
PpsI GAGTC 1 cut(s) 567
PsiI TTATAA 1 cut(s) 474
Psp6I CCWGG 2 cut(s) 39, 97
PspEI GGTNACC 1 cut(s) 101
PspGI CCWGG 2 cut(s) 39, 97
RsaI GTAC 3 cut(s) 15, 197, 377
RsaNI GTAC 3 cut(s) 14, 196, 376
RseI CAYNNNNRTG 1 cut(s) 510
SaqAI TTAA 4 cut(s) 36, 111, 276, 450
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 1 cut(s) 165
ScaI AGTACT 1 cut(s) 377
SchI GAGTC 1 cut(s) 568
ScrFI CCNGG 3 cut(s) 41, 99, 313
SetI ASST 9 cut(s) 15, 45, 100, 143, 231, 417, 459, 471, 526
SexAI ACCWGGT 2 cut(s) 39, 97
SfaNI GCATC 1 cut(s) 46
SfcI CTRYAG 1 cut(s) 21
Sfr274I CTCGAG 1 cut(s) 431
SlaI CTCGAG 1 cut(s) 431
SmiMI CAYNNNNRTG 1 cut(s) 510
SmlI CTYRAG 2 cut(s) 142, 431
SmoI CTYRAG 2 cut(s) 142, 431
SphI GCATGC 1 cut(s) 515
Sse9I AATT 2 cut(s) 191, 446
SsiI CCGC 4 cut(s) 7, 64, 175, 248
SspI AATATT 1 cut(s) 186
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 3 cut(s) 39, 97, 311
StyI CCWWGG 2 cut(s) 153, 211
TaqI TCGA 1 cut(s) 432
TasI AATT 2 cut(s) 191, 446
TatI WGTACW 2 cut(s) 195, 375
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 2 cut(s) 26, 117
Tru1I TTAA 4 cut(s) 36, 111, 276, 450
Tru9I TTAA 4 cut(s) 36, 111, 276, 450
TscAI CASTG 2 cut(s) 345, 522
TseFI GTSAC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 239
TspRI CASTG 2 cut(s) 345, 522
XceI RCATGY 1 cut(s) 515
XhoI CTCGAG 1 cut(s) 431
XmnI GAANNNNTTC 2 cut(s) 75, 426
XspI CTAG 1 cut(s) 230
ZrmI AGTACT 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.