Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000891

Physical Location & Seq

Genomic Coordinates Forward (+)

27030056 .. 27037150

Gene Structure 7095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG123800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGACAAGTACGAGAAAGTAGAGAAGATTGGGGAAGGAACTTATGGCGTGGTTTACAAGGCTCGTGATCGTCTCACCAATGAAACCATAGCTTTGAAGAAGATTCGGTTGGAGCAGGAAGATGAGGGCGTCCCAAGCACTGCCATTAGAGAAATTTCTCTCTTGAAAGAAATGCAGCATGCCAACATTGTCAGGTTACAGGATGTTGTGCATAGTGAGAAGCACTTGTATCTGGTGTTTGAGTACCTGGACTTGGATTTGAAGAAGTATATGGATTCTTCTCCTGAATTTGCAAAGGATCCTCGCCAGATAAAAAAAATGCTCTGCTTGGATCCGAGCAAAAGAATTACGGCAAGGGGTGCTCTTGAGCATGAATACTTCAAAGATATTCCATTTGTTCCCCGAGTCATTTCTTCCCATTATGGCATTCACGATCCTGAGATTGGAGAATCCCAACTCTCCGAGGGCTCTGAGGAAGACGACGATAGTGAAGGGGAGGATGAAGATGAACTGAATAAGAAAAAGGGAGGGGATTCTCGGACTAACAAGGCAGCAGCAGCAATGTGTGTAGCAATAGGCAGCTTCTCTGACCCTCCTGAGGCACAGGGGCTTGCACACTTTCTAGAACACATGCTTTTCATGGGGAGTACAGAATTTCCAGATGAAAATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016569 GO:0016570 GO:0016572 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030154 GO:0032502 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0072686 GO:0090304 GO:0097472 GO:0140096 GO:1901360 GO:1901564 GO:1903047 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04068 ko04110 ko04114 ko04115 ko04151 ko04218 ko04914 ko04934 ko05161 ko05162 ko05165 ko05168 ko05169 ko05200 ko05203 ko05215 ko05222 ko05226 map04068 map04110 map04114 map04115 map04151 map04218 map04914 map04934 map05161 map05162 map05165 map05168 map05169 map05200 map05203 map05215 map05222 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

224

Amino Acids

25.44

Weight (kDa)

4.87

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 92	2.6e-23	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 105	8.1e-13	Protein tyrosine and serine/threonine kinase
Peptidase_M16	PF00675	180 - 221	3.2e-11	Insulinase (Peptidase family M16)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06900
fragaria_vesca	FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361
malus_domestica	MD03G1052300.v1.1 MD10G1074700.v1.1 MD11G1054400.v1.1 MD17G1069300.v1.1
prunus_persica	Prupe.6G041800_v2.0.a1 Prupe.6G041900_v2.0.a1 Prupe.6G041900_v2.0.a1
pyrus_communis	pycom03g04160 pycom11g04420 pycom11g04430 pycom16g23220 pycom16g23230
rosa_chinensis	RchiOBHm_Chr1g0322391 RchiOBHm_Chr1g0322401 RchiOBHm_Chr1g0322811 RchiOBHm_Chr1g0333061 RchiOBHm_Chr1g0333871 RchiOBHm_Chr1g0333951 RchiOBHm_Chr1g0335141 RchiOBHm_Chr1g0369151 RchiOBHm_Chr5g0072551 RchiOBHm_Chr5g0072781 RchiOBHm_Chr5g0072801 RchiOBHm_Chr5g0072811 RchiOBHm_Chr5g0074171
rosa_laevigata	RLG00000022738 RLG00000029400 RLG00000029495 RLG00000029524 RLG00000030375 RLG00000030390
rosa_multiflora	Rmu_sc0003160.1_g000024 Rmu_sc0005069.1_g000001 Rmu_sc0007177.1_g000010 Rmu_sc0021925.1_g000002
rosa_roxburghii	Rroxscaffold_1G00008380 Rroxscaffold_5G00333240
rosa_rugosa	Rorug01G0112100 Rorug01G0119300 Rorug01G0120000 Rorug01G0120300 Rorug01G0489500 Rorug05G0420300 Rorug05G0429400
rosa_samantha	Rh1AG130000 Rh1CG123800 Rh1CG133900 Rh1DG135600 Rh1DG140200 Rh3BG342500 Rh3BG342600 Rh5AG470900 Rh5AG477000 Rh5CG520900 Rh5DG509700 Rh5DG509800
rosa_wichuraiana	Rw0G011760 Rw1G011290 Rw5G044290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	293, 306, 326, 339, 428
AcsI	RAATTY	3 cut(s)	153, 287, 653
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	3 cut(s)	11, 245, 649
AfiI	CCNNNNNNNGG	3 cut(s)	253, 443, 598
AgsI	TTSAA	4 cut(s)	97, 166, 262, 382
AjnI	CCWGG	1 cut(s)	246
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	2 cut(s)	92, 582
AluI	AGCT	2 cut(s)	92, 582
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	5 cut(s)	293, 306, 326, 339, 428
Ama87I	CYCGRG	1 cut(s)	402
ApeKI	GCWGC	5 cut(s)	175, 551, 554, 557, 579
ApoI	RAATTY	3 cut(s)	153, 287, 653
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	1 cut(s)	402
AxyI	CCTNAGG	1 cut(s)	597
BamHI	GGATCC	2 cut(s)	298, 331
BanII	GRGCYC	1 cut(s)	470
BauI	CACGAG	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	483
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	5 cut(s)	187, 563, 566, 569, 591
BceAI	ACGGC	1 cut(s)	366
BciT130I	CCWGG	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	623
BisI	GCNGC	5 cut(s)	176, 552, 555, 558, 580
BlsI	GCNGC	5 cut(s)	177, 553, 556, 559, 581
Bme1390I	CCNGG	1 cut(s)	248
BmeT110I	CYCGRG	1 cut(s)	402
BmiI	GGNNCC	2 cut(s)	300, 333
BmrFI	CCNGG	1 cut(s)	248
BpiI	GAAGAC	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	386
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	462
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 443, 598
Bse21I	CCTNAGG	1 cut(s)	597
Bse3DI	GCAATG	1 cut(s)	567
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	462
BseGI	GGATG	2 cut(s)	208, 505
BseLI	CCNNNNNNNGG	3 cut(s)	253, 443, 598
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	3 cut(s)	429, 462, 588
BseXI	GCAGC	5 cut(s)	187, 563, 566, 569, 591
BsiHKAI	GWGCWC	1 cut(s)	364
BsiHKCI	CYCGRG	1 cut(s)	402
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	3 cut(s)	253, 443, 598
BsmAI	GTCTC	1 cut(s)	77
BsmBI	CGTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	426
BsoBI	CYCGRG	1 cut(s)	402
Bsp1286I	GDGCHC	2 cut(s)	364, 470
Bsp143I	GATC	4 cut(s)	67, 298, 331, 433
BspCNI	CTCAG	3 cut(s)	430, 463, 589
BspLI	GGNNCC	2 cut(s)	300, 333
BspPI	GGATC	5 cut(s)	293, 306, 326, 339, 428
BsrDI	GCAATG	1 cut(s)	567
BssECI	CCNNGG	1 cut(s)	462
BssMI	GATC	4 cut(s)	67, 298, 331, 433
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	248
BstACI	GRCGYC	1 cut(s)	129
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	180, 612
BstDEI	CTNAG	3 cut(s)	438, 471, 597
BstF5I	GGATG	2 cut(s)	208, 505
BstKTI	GATC	4 cut(s)	70, 301, 334, 436
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	4 cut(s)	67, 298, 331, 433
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 359, 557
BstNI	CCWGG	1 cut(s)	248
BstNSI	RCATGY	2 cut(s)	182, 634
BstSCI	CCNGG	1 cut(s)	246
BstV1I	GCAGC	5 cut(s)	187, 563, 566, 569, 591
BstV2I	GAAGAC	1 cut(s)	483
BstX2I	RGATCY	2 cut(s)	298, 331
BstYI	RGATCY	2 cut(s)	298, 331
Bsu36I	CCTNAGG	1 cut(s)	597
BtsCI	GGATG	2 cut(s)	208, 505
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	2 cut(s)	180, 612
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	3 cut(s)	10, 244, 648
CviAII	CATG	4 cut(s)	179, 371, 631, 640
CviJI	RGCY	5 cut(s)	62, 92, 468, 582, 610
CviKI_1	RGCY	5 cut(s)	62, 92, 468, 582, 610
CviQI	GTAC	3 cut(s)	10, 244, 648
DdeI	CTNAG	3 cut(s)	438, 471, 597
DpnI	GATC	4 cut(s)	69, 300, 333, 435
DpnII	GATC	4 cut(s)	67, 298, 331, 433
Eco24I	GRGCYC	1 cut(s)	470
Eco81I	CCTNAGG	1 cut(s)	597
Eco88I	CYCGRG	1 cut(s)	402
EcoRII	CCWGG	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	470
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	4 cut(s)	182, 374, 634, 643
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	4 cut(s)	178, 370, 630, 639
Fnu4HI	GCNGC	5 cut(s)	176, 552, 555, 558, 580
FokI	GGATG	2 cut(s)	215, 512
FriOI	GRGCYC	1 cut(s)	470
Fsp4HI	GCNGC	5 cut(s)	176, 552, 555, 558, 580
FspBI	CTAG	1 cut(s)	623
GluI	GCNGC	5 cut(s)	176, 552, 555, 558, 580
HgaI	GACGC	1 cut(s)	118
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	4 cut(s)	182, 374, 634, 643
HinfI	GANTC	5 cut(s)	103, 275, 405, 449, 533
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	5 cut(s)	336, 463, 472, 540, 589
Hpy188III	TCNNGA	9 cut(s)	65, 163, 284, 365, 431, 437, 596, 623, 659
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	485
HpyAV	CCTTC	2 cut(s)	29, 485
HpyCH4V	TGCA	4 cut(s)	175, 211, 293, 614
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 359, 557
HpyF3I	CTNAG	3 cut(s)	438, 471, 597
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	4 cut(s)	182, 374, 634, 643
Kzo9I	GATC	4 cut(s)	67, 298, 331, 433
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	5 cut(s)	187, 563, 566, 569, 591
MaeI	CTAG	1 cut(s)	623
MaeIII	GTNAC	1 cut(s)	195
MalI	GATC	4 cut(s)	69, 300, 333, 435
MboI	GATC	4 cut(s)	67, 298, 331, 433
MboII	GAAGA	9 cut(s)	37, 109, 112, 131, 270, 274, 405, 488, 515
MflI	RGATCY	2 cut(s)	298, 331
MhlI	GDGCHC	2 cut(s)	364, 470
MluCI	AATT	4 cut(s)	153, 287, 345, 653
MlyI	GAGTC	1 cut(s)	414
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	8 cut(s)	118, 312, 457, 466, 490, 521, 592, 603
MspR9I	CCNGG	1 cut(s)	248
Mva1269I	GAATGC	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	3 cut(s)	135, 359, 557
NdeII	GATC	4 cut(s)	67, 298, 331, 433
NlaIII	CATG	4 cut(s)	182, 374, 634, 643
NlaIV	GGNNCC	2 cut(s)	300, 333
NspI	RCATGY	2 cut(s)	182, 634
PaeI	GCATGC	1 cut(s)	182
PctI	GAATGC	1 cut(s)	426
PfeI	GAWTC	4 cut(s)	103, 275, 449, 533
PkrI	GCNGC	5 cut(s)	177, 553, 556, 559, 581
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	2 cut(s)	300, 333
PsuI	RGATCY	2 cut(s)	298, 331
RsaI	GTAC	3 cut(s)	11, 245, 649
RsaNI	GTAC	3 cut(s)	10, 244, 648
SatI	GCNGC	5 cut(s)	176, 552, 555, 558, 580
Sau3AI	GATC	4 cut(s)	67, 298, 331, 433
SchI	GAGTC	1 cut(s)	414
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	2 cut(s)	364, 470
SetI	ASST	4 cut(s)	94, 197, 249, 584
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
SphI	GCATGC	1 cut(s)	182
Sse9I	AATT	4 cut(s)	153, 287, 345, 653
SspMI	CTAG	1 cut(s)	623
StyD4I	CCNGG	1 cut(s)	246
TasI	AATT	4 cut(s)	153, 287, 345, 653
TatI	WGTACW	1 cut(s)	647
TfiI	GAWTC	4 cut(s)	103, 275, 449, 533
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	5 cut(s)	175, 551, 554, 557, 579
TspDTI	ATGAA	5 cut(s)	96, 387, 516, 522, 628
TspRI	CASTG	1 cut(s)	145
XapI	RAATTY	3 cut(s)	153, 287, 653
XbaI	TCTAGA	1 cut(s)	622
XceI	RCATGY	2 cut(s)	182, 634
XspI	CTAG	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.