Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0000288

Physical Location & Seq

Genomic Coordinates Forward (+)

4090947 .. 4093645

Gene Structure 2699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g03770.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTTCCTCCCACTTAGGAAAACCATATATAAAGATAACAAAGGAAAAAAGATTCCTGTGGTGAACTACATTTTCCGAGACTCCCTTAAGCGAAAAGCCAGTGATGCAGAAACAGTTATAAATGTACACCATGCGTTGGAGAAGTTTTTGTCTTTGATTCCTTATTTTGCATCAAATGAGGACGCACTTATTTCTGAAGTTAATTGGGCAAGAGAATCTGTTGATGTACCTCTTACTTCAAAGCCCCGGGTATTGACAGGATTTCTTCTACAAGAAATTAAAGATTTTTGGAGAGTTGCCTTGCTGATGGCTACATTGTTATATCCCCCCAACAATGATTGTACCGAAGATCTTCTAAGTAAGAACTTTGAACTGGAAAGACGAAGAGCCTTATTTATAGCAGCTGAAGATGCCATACTTAAACTAGGTCTTGATAAAGTTTGGGATGCAAAACCACTACTGAACGGGAAGGAGATCATGAATGTTTTGCAGCTTAAATCTGGAGGACCACTTGTGCGAGAATGGCAACAAAAAATATTTGCATGGCAGTTTGCTCACCCTTCAGGAACTGCAGAAGAATGCCTTGAGTGGATGAAGGAAACACATTCGAAACGTTTAAAGATGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

210

Amino Acids

24.18

Weight (kDa)

8.76

Isoelectric Point (pI)

36.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca	FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica	MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica	Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis	pycom05g03810 pycom10g03770
rosa_chinensis	RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata	RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora	Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii	Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa	Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha	Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana	Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	119
AccB7I	CCANNNNNTGG	1 cut(s)	136
AclI	AACGTT	1 cut(s)	613
AcuI	CTGAAG	3 cut(s)	216, 426, 546
AfaI	GTAC	3 cut(s)	126, 228, 343
AfiI	CCNNNNNNNGG	1 cut(s)	136
AflII	CTTAAG	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	240, 371
AluBI	AGCT	2 cut(s)	404, 493
AluI	AGCT	2 cut(s)	404, 493
Alw26I	GTCTC	1 cut(s)	72
AlwNI	CAGNNNCTG	1 cut(s)	569
Ama87I	CYCGRG	1 cut(s)	246
ApeKI	GCWGC	2 cut(s)	401, 490
Asp700I	GAANNNNTTC	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	506
AsuC2I	CCSGG	2 cut(s)	247, 248
AsuHPI	GGTGA	2 cut(s)	73, 548
AsuII	TTCGAA	1 cut(s)	608
AvaI	CYCGRG	1 cut(s)	246
AvaII	GGWCC	1 cut(s)	506
BarI	GAAGNNNNNNTAC	2 cut(s)	399, 431
BbvI	GCAGC	2 cut(s)	413, 502
BccI	CCATC	2 cut(s)	301, 616
BcnI	CCSGG	2 cut(s)	247, 248
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	1 cut(s)	570
BfrI	CTTAAG	1 cut(s)	86
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	2 cut(s)	402, 491
BlsI	GCNGC	2 cut(s)	403, 492
Bme1390I	CCNGG	2 cut(s)	247, 248
Bme18I	GGWCC	1 cut(s)	506
BmeT110I	CYCGRG	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	506
BmrFI	CCNGG	2 cut(s)	247, 248
BmsI	GCATC	4 cut(s)	94, 179, 400, 436
BpmI	CTGGAG	1 cut(s)	522
Bpu14I	TTCGAA	1 cut(s)	608
BpuEI	CTTGAG	1 cut(s)	605
BpuMI	CCSGG	2 cut(s)	247, 248
BsaJI	CCNNGG	2 cut(s)	245, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	2 cut(s)	99, 378
BseDI	CCNNGG	2 cut(s)	245, 246
BseGI	GGATG	2 cut(s)	451, 597
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseNI	ACTGG	2 cut(s)	99, 378
BseXI	GCAGC	2 cut(s)	413, 502
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	584
BsoBI	CYCGRG	1 cut(s)	246
Bsp119I	TTCGAA	1 cut(s)	608
Bsp1407I	TGTACA	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	349, 474
BspHI	TCATGA	1 cut(s)	477
BspMAI	CTGCAG	1 cut(s)	574
BspQI	GCTCTTC	1 cut(s)	379
BspT104I	TTCGAA	1 cut(s)	608
BspTI	CTTAAG	1 cut(s)	86
BsrGI	TGTACA	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	99, 378
BssECI	CCNNGG	2 cut(s)	245, 246
BssMI	GATC	2 cut(s)	349, 474
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	379
BstAFI	CTTAAG	1 cut(s)	86
BstAUI	TGTACA	1 cut(s)	124
BstBI	TTCGAA	1 cut(s)	608
BstDEI	CTNAG	2 cut(s)	14, 356
BstF5I	GGATG	2 cut(s)	451, 597
BstKTI	GATC	2 cut(s)	352, 477
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	2 cut(s)	349, 474
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 410, 523
BstSCI	CCNGG	2 cut(s)	245, 246
BstSFI	CTRYAG	1 cut(s)	570
BstV1I	GCAGC	2 cut(s)	413, 502
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BtsCI	GGATG	2 cut(s)	451, 597
BtsIMutI	CAGTG	1 cut(s)	106
CaiI	CAGNNNCTG	1 cut(s)	569
CciI	TCATGA	1 cut(s)	477
Cfr13I	GGNCC	1 cut(s)	506
Cfr9I	CCCGGG	1 cut(s)	246
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	3 cut(s)	125, 227, 342
CviAII	CATG	3 cut(s)	131, 478, 543
CviJI	RGCY	6 cut(s)	98, 244, 311, 389, 404, 493
CviKI_1	RGCY	6 cut(s)	98, 244, 311, 389, 404, 493
CviQI	GTAC	3 cut(s)	125, 227, 342
DdeI	CTNAG	2 cut(s)	14, 356
DpnI	GATC	2 cut(s)	351, 476
DpnII	GATC	2 cut(s)	349, 474
DraI	TTTAAA	1 cut(s)	618
Eam1104I	CTCTTC	1 cut(s)	379
EarI	CTCTTC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	506
Eco57I	CTGAAG	3 cut(s)	216, 426, 546
Eco88I	CYCGRG	1 cut(s)	246
FaeI	CATG	3 cut(s)	134, 481, 546
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FatI	CATG	3 cut(s)	130, 477, 542
Fnu4HI	GCNGC	2 cut(s)	402, 491
FokI	GGATG	2 cut(s)	458, 604
Fsp4HI	GCNGC	2 cut(s)	402, 491
FspBI	CTAG	1 cut(s)	425
GluI	GCNGC	2 cut(s)	402, 491
GsuI	CTGGAG	1 cut(s)	522
HapII	CCGG	1 cut(s)	247
HgaI	GACGC	1 cut(s)	191
Hin1II	CATG	3 cut(s)	134, 481, 546
HinfI	GANTC	4 cut(s)	52, 80, 157, 215
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	2 cut(s)	73, 548
Hpy166II	GTNNAC	2 cut(s)	64, 127
Hpy188I	TCNGA	2 cut(s)	77, 196
Hpy188III	TCNNGA	4 cut(s)	431, 478, 501, 564
Hpy8I	GTNNAC	2 cut(s)	64, 127
HpyAV	CCTTC	3 cut(s)	463, 570, 589
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	613
HpyCH4V	TGCA	6 cut(s)	107, 170, 449, 490, 542, 572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 410, 523
HpyF3I	CTNAG	2 cut(s)	14, 356
HpySE526I	ACGT	1 cut(s)	613
Hsp92II	CATG	3 cut(s)	134, 481, 546
Kzo9I	GATC	2 cut(s)	349, 474
LguI	GCTCTTC	1 cut(s)	379
LpnPI	CCDG	7 cut(s)	69, 112, 243, 260, 359, 486, 549
Lsp1109I	GCAGC	2 cut(s)	413, 502
LweI	GCATC	4 cut(s)	94, 179, 400, 436
MaeI	CTAG	1 cut(s)	425
MaeII	ACGT	1 cut(s)	613
MalI	GATC	2 cut(s)	351, 476
MboI	GATC	2 cut(s)	349, 474
MboII	GAAGA	6 cut(s)	257, 344, 359, 396, 419, 587
MflI	RGATCY	1 cut(s)	349
MluCI	AATT	2 cut(s)	202, 276
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	4 cut(s)	17, 172, 240, 497
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	6 cut(s)	87, 201, 279, 420, 495, 617
MspA1I	CMGCKG	1 cut(s)	404
MspCI	CTTAAG	1 cut(s)	86
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	2 cut(s)	247, 248
Mva1269I	GAATGC	1 cut(s)	584
MwoI	GCNNNNNNNGC	3 cut(s)	104, 410, 523
NciI	CCSGG	2 cut(s)	247, 248
NdeII	GATC	2 cut(s)	349, 474
NlaIII	CATG	3 cut(s)	134, 481, 546
NspV	TTCGAA	1 cut(s)	608
PagI	TCATGA	1 cut(s)	477
PciSI	GCTCTTC	1 cut(s)	379
PctI	GAATGC	1 cut(s)	584
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	3 cut(s)	52, 157, 215
PflMI	CCANNNNNTGG	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	403, 492
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PsiI	TTATAA	1 cut(s)	119
Psp1406I	AACGTT	1 cut(s)	613
PspPI	GGNCC	1 cut(s)	506
PstI	CTGCAG	1 cut(s)	574
PstNI	CAGNNNCTG	1 cut(s)	569
PsuI	RGATCY	1 cut(s)	349
PvuII	CAGCTG	1 cut(s)	404
RsaI	GTAC	3 cut(s)	126, 228, 343
RsaNI	GTAC	3 cut(s)	125, 227, 342
SapI	GCTCTTC	1 cut(s)	379
SaqAI	TTAA	6 cut(s)	87, 201, 279, 420, 495, 617
SatI	GCNGC	2 cut(s)	402, 491
Sau3AI	GATC	2 cut(s)	349, 474
Sau96I	GGNCC	1 cut(s)	506
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	2 cut(s)	247, 248
SetI	ASST	5 cut(s)	232, 406, 430, 495, 616
SfaNI	GCATC	4 cut(s)	94, 179, 400, 436
SfcI	CTRYAG	1 cut(s)	570
SfuI	TTCGAA	1 cut(s)	608
SinI	GGWCC	1 cut(s)	506
SmaI	CCCGGG	1 cut(s)	248
SmlI	CTYRAG	2 cut(s)	86, 584
SmoI	CTYRAG	2 cut(s)	86, 584
Sse9I	AATT	2 cut(s)	202, 276
SspI	AATATT	1 cut(s)	537
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	2 cut(s)	245, 246
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	1 cut(s)	616
TaqI	TCGA	1 cut(s)	608
TasI	AATT	2 cut(s)	202, 276
TatI	WGTACW	1 cut(s)	124
TfiI	GAWTC	3 cut(s)	52, 157, 215
Tru1I	TTAA	6 cut(s)	87, 201, 279, 420, 495, 617
Tru9I	TTAA	6 cut(s)	87, 201, 279, 420, 495, 617
TscAI	CASTG	1 cut(s)	106
TseI	GCWGC	2 cut(s)	401, 490
TspDTI	ATGAA	2 cut(s)	494, 608
TspMI	CCCGGG	1 cut(s)	246
TspRI	CASTG	1 cut(s)	106
Van91I	CCANNNNNTGG	1 cut(s)	136
Vha464I	CTTAAG	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	506
XmaI	CCCGGG	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	351
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.