Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007843.1

Orthogroup ID

OG0000288

Physical Location & Seq

Genomic Coordinates Reverse (-)

13445 .. 19005

Gene Structure 5561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007843.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgaagtttatgggggaagaggtccgaggaagtgccattattcgaagcaatcccaaccaatcaaaacatctggaaacggcgaggctgcgcatatttggtacatgggttgattttgtgaacttacgttttgaagagtacccgaattcctgttatgcaaaaatatggcacaccggaacaggatgcaacgagaagggatctaacgatagtttgttctacaatatcaataccaaatcagttgaagattggaccaacagaggcatcaaagatctgaagtccgggaatattgcgactcctttgtcaccaaaggaaactattatggaggatccagtgcgtggtctgcgagctgttcgtattggcacaaggtatggattcacacttgttgaacagctaaaggaagctgctgccagtgatgaagtgaaggcagctctttctgctaaagttagcagagagcgaattggagctgaaattgatctcatgatatctggagaccaacctgtccaagctatgaccttactgtgtgacttcaattggttttggctaacatctccatggccgccaaccgggctgccgtatcatctccgccgcagcgaagaaagaccatgtccactctcggagccagaatctgcctcgtcgccgctcttgccacccaagcctccttcgtctcctagtgacataaatgttcaaatccctttcccacaatctaaaattttccttgattttcaggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

242

Amino Acids

27.22

Weight (kDa)

6.34

Isoelectric Point (pI)

52.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca	FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica	MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica	Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis	pycom05g03810 pycom10g03770
rosa_chinensis	RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata	RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora	Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii	Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa	Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha	Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana	Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	295, 494
Acc16I	TGCGCA	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	332
AccBSI	CCGCTC	1 cut(s)	637
AciI	CCGC	4 cut(s)	554, 580, 583, 635
AclWI	GGATC	3 cut(s)	202, 317, 330
AcoI	YGGCCR	1 cut(s)	551
AcsI	RAATTY	2 cut(s)	142, 705
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	2 cut(s)	100, 137
AfiI	CCNNNNNNNGG	2 cut(s)	332, 560
AgsI	TTSAA	5 cut(s)	131, 239, 383, 526, 683
AluBI	AGCT	6 cut(s)	344, 388, 398, 425, 461, 503
AluI	AGCT	6 cut(s)	344, 388, 398, 425, 461, 503
Alw26I	GTCTC	2 cut(s)	480, 666
AlwI	GGATC	3 cut(s)	202, 317, 330
AlwNI	CAGNNNCTG	1 cut(s)	623
AoxI	GGCC	1 cut(s)	551
ApeKI	GCWGC	6 cut(s)	85, 398, 401, 422, 565, 585
ApoI	RAATTY	2 cut(s)	142, 705
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	2 cut(s)	22, 246
AsuC2I	CCSGG	2 cut(s)	277, 562
AsuHPI	GGTGA	1 cut(s)	291
AsuII	TTCGAA	1 cut(s)	43
AvaII	GGWCC	2 cut(s)	22, 246
BaeI	ACNNNNGTAYC	2 cut(s)	90, 123
BamHI	GGATCC	1 cut(s)	322
BbvI	GCAGC	6 cut(s)	72, 385, 388, 434, 552, 597
BceAI	ACGGC	2 cut(s)	93, 553
BcnI	CCSGG	2 cut(s)	277, 562
BcoDI	GTCTC	2 cut(s)	480, 666
BfaI	CTAG	1 cut(s)	666
BglI	GCCNNNNNGGC	1 cut(s)	562
BglII	AGATCT	1 cut(s)	265
BisI	GCNGC	9 cut(s)	86, 399, 402, 423, 554, 566, 583, 586, 635
BlsI	GCNGC	9 cut(s)	87, 400, 403, 424, 555, 567, 584, 587, 636
Bme1390I	CCNGG	2 cut(s)	277, 562
Bme18I	GGWCC	2 cut(s)	22, 246
BmgT120I	GGNCC	2 cut(s)	22, 246
BmiI	GGNNCC	2 cut(s)	324, 615
BmrFI	CCNGG	2 cut(s)	277, 562
BmsI	GCATC	2 cut(s)	170, 267
BpmI	CTGGAG	1 cut(s)	504
Bpu14I	TTCGAA	1 cut(s)	43
BpuMI	CCSGG	2 cut(s)	277, 562
BsaI	GGTCTC	1 cut(s)	480
BsaJI	CCNNGG	2 cut(s)	25, 548
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 560
Bse1I	ACTGG	2 cut(s)	326, 405
BseDI	CCNNGG	2 cut(s)	25, 548
BseGI	GGATG	1 cut(s)	185
BseLI	CCNNNNNNNGG	2 cut(s)	332, 560
BseNI	ACTGG	2 cut(s)	326, 405
BseXI	GCAGC	6 cut(s)	72, 385, 388, 434, 552, 597
BshFI	GGCC	1 cut(s)	553
BsiSI	CCGG	3 cut(s)	171, 276, 561
BslI	CCNNNNNNNGG	2 cut(s)	332, 560
BsmAI	GTCTC	2 cut(s)	480, 666
BsmBI	CGTCTC	1 cut(s)	666
BsnI	GGCC	1 cut(s)	553
Bso31I	GGTCTC	1 cut(s)	480
Bsp119I	TTCGAA	1 cut(s)	43
Bsp143I	GATC	4 cut(s)	194, 265, 322, 469
Bsp19I	CCATGG	1 cut(s)	548
BspACI	CCGC	4 cut(s)	554, 580, 583, 635
BspANI	GGCC	1 cut(s)	553
BspHI	TCATGA	1 cut(s)	474
BspLI	GGNNCC	2 cut(s)	324, 615
BspPI	GGATC	3 cut(s)	202, 317, 330
BspT104I	TTCGAA	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	480
BsrBI	CCGCTC	1 cut(s)	637
BsrI	ACTGG	2 cut(s)	326, 405
BssECI	CCNNGG	2 cut(s)	25, 548
BssMI	GATC	4 cut(s)	194, 265, 322, 469
BssT1I	CCWWGG	1 cut(s)	548
Bst4CI	ACNGT	1 cut(s)	516
Bst6I	CTCTTC	2 cut(s)	12, 126
BstBI	TTCGAA	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	342
BstDSI	CCRYGG	1 cut(s)	548
BstF5I	GGATG	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	4 cut(s)	197, 268, 325, 472
BstMAI	GTCTC	2 cut(s)	480, 666
BstMBI	GATC	4 cut(s)	194, 265, 322, 469
BstMWI	GCNNNNNNNGC	5 cut(s)	337, 431, 562, 640, 649
BstSCI	CCNGG	2 cut(s)	275, 560
BstV1I	GCAGC	6 cut(s)	72, 385, 388, 434, 552, 597
BstX2I	RGATCY	3 cut(s)	194, 265, 322
BstYI	RGATCY	3 cut(s)	194, 265, 322
BsuRI	GGCC	1 cut(s)	553
BtgI	CCRYGG	1 cut(s)	548
BtsCI	GGATG	1 cut(s)	185
BtsIMutI	CAGTG	2 cut(s)	333, 412
Cac8I	GCNNGC	1 cut(s)	342
CaiI	CAGNNNCTG	1 cut(s)	623
CciI	TCATGA	1 cut(s)	474
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	2 cut(s)	22, 246
Csp6I	GTAC	2 cut(s)	99, 136
CviAII	CATG	4 cut(s)	102, 475, 549, 600
CviQI	GTAC	2 cut(s)	99, 136
DpnI	GATC	4 cut(s)	196, 267, 324, 471
DpnII	GATC	4 cut(s)	194, 265, 322, 469
DrdI	GACNNNNNNGTC	2 cut(s)	295, 494
DseDI	GACNNNNNNGTC	2 cut(s)	295, 494
EaeI	YGGCCR	1 cut(s)	551
Eam1104I	CTCTTC	2 cut(s)	12, 126
EarI	CTCTTC	2 cut(s)	12, 126
EciI	GGCGGA	1 cut(s)	569
Eco130I	CCWWGG	1 cut(s)	548
Eco31I	GGTCTC	1 cut(s)	480
Eco32I	GATATC	1 cut(s)	480
Eco47I	GGWCC	2 cut(s)	22, 246
Eco57I	CTGAAG	1 cut(s)	290
EcoRI	GAATTC	1 cut(s)	142
EcoRV	GATATC	1 cut(s)	480
EcoT14I	CCWWGG	1 cut(s)	548
ErhI	CCWWGG	1 cut(s)	548
Esp3I	CGTCTC	1 cut(s)	666
FaeI	CATG	4 cut(s)	105, 478, 552, 603
FatI	CATG	4 cut(s)	101, 474, 548, 599
Fnu4HI	GCNGC	9 cut(s)	86, 399, 402, 423, 554, 566, 583, 586, 635
FokI	GGATG	1 cut(s)	192
Fsp4HI	GCNGC	9 cut(s)	86, 399, 402, 423, 554, 566, 583, 586, 635
FspBI	CTAG	1 cut(s)	666
FspI	TGCGCA	1 cut(s)	89
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	9 cut(s)	86, 399, 402, 423, 554, 566, 583, 586, 635
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	1 cut(s)	553
HapII	CCGG	3 cut(s)	171, 276, 561
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	4 cut(s)	105, 478, 552, 603
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HinfI	GANTC	3 cut(s)	289, 369, 620
HpaII	CCGG	3 cut(s)	171, 276, 561
HphI	GGTGA	1 cut(s)	291
Hpy166II	GTNNAC	2 cut(s)	118, 605
Hpy188I	TCNGA	3 cut(s)	26, 270, 613
Hpy188III	TCNNGA	3 cut(s)	71, 475, 483
Hpy8I	GTNNAC	2 cut(s)	118, 605
Hpy99I	CGWCG	1 cut(s)	634
HpyAV	CCTTC	3 cut(s)	184, 412, 666
HpyCH4III	ACNGT	1 cut(s)	516
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	2 cut(s)	155, 183
HpyF10VI	GCNNNNNNNGC	5 cut(s)	337, 431, 562, 640, 649
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	4 cut(s)	105, 478, 552, 603
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	4 cut(s)	194, 265, 322, 469
LmnI	GCTCC	2 cut(s)	458, 613
Lsp1109I	GCAGC	6 cut(s)	72, 385, 388, 434, 552, 597
LweI	GCATC	2 cut(s)	170, 267
MaeI	CTAG	1 cut(s)	666
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	3 cut(s)	297, 518, 668
MalI	GATC	4 cut(s)	196, 267, 324, 471
MbiI	CCGCTC	1 cut(s)	637
MboI	GATC	4 cut(s)	194, 265, 322, 469
MboII	GAAGA	4 cut(s)	29, 143, 251, 602
MfeI	CAATTG	1 cut(s)	526
MflI	RGATCY	3 cut(s)	194, 265, 322
MluCI	AATT	5 cut(s)	142, 453, 465, 526, 705
MlyI	GAGTC	1 cut(s)	283
MnlI	CCTC	7 cut(s)	13, 20, 75, 248, 313, 637, 663
MseI	TTAA	1 cut(s)	727
MslI	CAYNNNNRTG	1 cut(s)	547
MspI	CCGG	3 cut(s)	171, 276, 561
MspR9I	CCNGG	2 cut(s)	277, 562
MunI	CAATTG	1 cut(s)	526
MwoI	GCNNNNNNNGC	5 cut(s)	337, 431, 562, 640, 649
NciI	CCSGG	2 cut(s)	277, 562
NcoI	CCATGG	1 cut(s)	548
NdeII	GATC	4 cut(s)	194, 265, 322, 469
NlaIII	CATG	4 cut(s)	105, 478, 552, 603
NlaIV	GGNNCC	2 cut(s)	324, 615
NmuCI	GTSAC	3 cut(s)	297, 518, 668
NsbI	TGCGCA	1 cut(s)	89
NspV	TTCGAA	1 cut(s)	43
PagI	TCATGA	1 cut(s)	474
PfeI	GAWTC	2 cut(s)	369, 620
PflFI	GACNNNGTC	1 cut(s)	600
PflMI	CCANNNNNTGG	1 cut(s)	332
PfoI	TCCNGGA	1 cut(s)	275
PkrI	GCNGC	9 cut(s)	87, 400, 403, 424, 555, 567, 584, 587, 636
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PspN4I	GGNNCC	2 cut(s)	324, 615
PspPI	GGNCC	2 cut(s)	22, 246
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	3 cut(s)	194, 265, 322
PsyI	GACNNNGTC	1 cut(s)	600
RsaI	GTAC	2 cut(s)	100, 137
RsaNI	GTAC	2 cut(s)	99, 136
RseI	CAYNNNNRTG	1 cut(s)	547
SaqAI	TTAA	1 cut(s)	727
SatI	GCNGC	9 cut(s)	86, 399, 402, 423, 554, 566, 583, 586, 635
Sau3AI	GATC	4 cut(s)	194, 265, 322, 469
Sau96I	GGNCC	2 cut(s)	22, 246
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	277, 562
SfaNI	GCATC	2 cut(s)	170, 267
SfuI	TTCGAA	1 cut(s)	43
SinI	GGWCC	2 cut(s)	22, 246
SmiMI	CAYNNNNRTG	1 cut(s)	547
Sse9I	AATT	5 cut(s)	142, 453, 465, 526, 705
SsiI	CCGC	4 cut(s)	554, 580, 583, 635
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	1 cut(s)	666
StyD4I	CCNGG	2 cut(s)	275, 560
StyI	CCWWGG	1 cut(s)	548
TaaI	ACNGT	1 cut(s)	516
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	43
TasI	AATT	5 cut(s)	142, 453, 465, 526, 705
TauI	GCSGC	3 cut(s)	556, 585, 637
TfiI	GAWTC	2 cut(s)	369, 620
Tru1I	TTAA	1 cut(s)	727
Tru9I	TTAA	1 cut(s)	727
TscAI	CASTG	2 cut(s)	333, 412
TseFI	GTSAC	3 cut(s)	297, 518, 668
TseI	GCWGC	6 cut(s)	85, 398, 401, 422, 565, 585
Tsp45I	GTSAC	3 cut(s)	297, 518, 668
TspDTI	ATGAA	2 cut(s)	17, 426
TspRI	CASTG	2 cut(s)	333, 412
Tth111I	GACNNNGTC	1 cut(s)	600
Van91I	CCANNNNNTGG	1 cut(s)	332
VpaK11BI	GGWCC	2 cut(s)	22, 246
XapI	RAATTY	2 cut(s)	142, 705
XspI	CTAG	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.