Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000288

Physical Location & Seq

Genomic Coordinates Forward (+)

42897719 .. 42898016

Gene Structure 298 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG170200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGATGCTTTGCAGCTTAAATCTGGAGGACCACTTGTCAGTAAATGGCAAAGGAAGCTACTTGCATGGCAGCTTGCTCATCCTTTGGGGACTGCAGAGGAATGCCTCAAGTGGCTGAAGGAAACACACTCTTCAAGTACTAGATCTGTTGGAGATATGGAGGAACTGAATGCACCCAACAACAAGAAATGTAAAACTGAAGATCGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

70

Amino Acids

7.91

Weight (kDa)

7.8

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca	FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica	MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica	Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis	pycom05g03810 pycom10g03770
rosa_chinensis	RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata	RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora	Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii	Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa	Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha	Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana	Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	137
AfaI	GTAC	1 cut(s)	139
AgsI	TTSAA	1 cut(s)	135
AhdI	GACNNNNNGTC	1 cut(s)	35
AluBI	AGCT	3 cut(s)	16, 58, 73
AluI	AGCT	3 cut(s)	16, 58, 73
ApeKI	GCWGC	2 cut(s)	13, 70
AspS9I	GGNCC	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	29
BbvI	GCAGC	2 cut(s)	25, 82
BfaI	CTAG	1 cut(s)	141
BfmI	CTRYAG	1 cut(s)	93
BglII	AGATCT	1 cut(s)	143
BisI	GCNGC	2 cut(s)	14, 71
BlsI	GCNGC	2 cut(s)	15, 72
BmcAI	AGTACT	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	29
BmeRI	GACNNNNNGTC	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	92
BseGI	GGATG	2 cut(s)	10, 79
BseXI	GCAGC	2 cut(s)	25, 82
BslFI	GGGAC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	103
BsmI	GAATGC	2 cut(s)	107, 175
Bsp143I	GATC	2 cut(s)	143, 202
BspMAI	CTGCAG	1 cut(s)	97
BssMI	GATC	2 cut(s)	143, 202
Bst6I	CTCTTC	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	10, 79
BstKTI	GATC	2 cut(s)	146, 205
BstMBI	GATC	2 cut(s)	143, 202
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	93
BstV1I	GCAGC	2 cut(s)	25, 82
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	10, 79
Cac8I	GCNNGC	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	1 cut(s)	66
CviJI	RGCY	4 cut(s)	16, 58, 73, 115
CviKI_1	RGCY	4 cut(s)	16, 58, 73, 115
CviQI	GTAC	1 cut(s)	138
DpnI	GATC	2 cut(s)	145, 204
DpnII	GATC	2 cut(s)	143, 202
DriI	GACNNNNNGTC	1 cut(s)	35
Eam1104I	CTCTTC	1 cut(s)	136
Eam1105I	GACNNNNNGTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	137
FaeI	CATG	1 cut(s)	69
FaiI	YATR	2 cut(s)	67, 158
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	1 cut(s)	65
Fnu4HI	GCNGC	2 cut(s)	14, 71
FokI	GGATG	2 cut(s)	17, 66
Fsp4HI	GCNGC	2 cut(s)	14, 71
FspBI	CTAG	1 cut(s)	141
GluI	GCNGC	2 cut(s)	14, 71
GsuI	CTGGAG	1 cut(s)	45
Hin1II	CATG	1 cut(s)	69
Hpy188III	TCNNGA	2 cut(s)	24, 206
HpyAV	CCTTC	1 cut(s)	112
HpyCH4V	TGCA	4 cut(s)	13, 65, 95, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
Hsp92II	CATG	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	143, 202
LpnPI	CCDG	1 cut(s)	9
Lsp1109I	GCAGC	2 cut(s)	25, 82
MaeI	CTAG	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	2 cut(s)	145, 204
MboI	GATC	2 cut(s)	143, 202
MboII	GAAGA	2 cut(s)	123, 212
MflI	RGATCY	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	4 cut(s)	20, 91, 116, 154
MseI	TTAA	1 cut(s)	18
Mva1269I	GAATGC	2 cut(s)	107, 175
MwoI	GCNNNNNNNGC	1 cut(s)	55
NdeII	GATC	2 cut(s)	143, 202
NlaIII	CATG	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	206
PctI	GAATGC	2 cut(s)	107, 175
PkrI	GCNGC	2 cut(s)	15, 72
PspPI	GGNCC	1 cut(s)	29
PstI	CTGCAG	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	143
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	2 cut(s)	14, 71
Sau3AI	GATC	2 cut(s)	143, 202
Sau96I	GGNCC	1 cut(s)	29
ScaI	AGTACT	1 cut(s)	139
SetI	ASST	3 cut(s)	18, 60, 75
SfcI	CTRYAG	1 cut(s)	93
SgeI	CNNG	9 cut(s)	36, 47, 74, 78, 86, 121, 147, 153, 196
SinI	GGWCC	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
SspMI	CTAG	1 cut(s)	141
TatI	WGTACW	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	2 cut(s)	13, 70
Tsp45I	GTSAC	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	29
XspI	CTAG	1 cut(s)	141
ZrmI	AGTACT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.