Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000288

Physical Location & Seq

Genomic Coordinates Reverse (-)

48809971 .. 48810776

Gene Structure 806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG202600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTCTACGCCACCTGTACATGTGAGAGATACCATTGAACTTGATGAAATTGAAGAGAAGATCTTTGAAAGGCTGCTTAGAACGCTACACCATTATGGACGAGCTTCATGTCGCAGGTGGATGGTCCGTGATAAGCTTCTAGGAAAAAAATTCAAGGACATCGATATTGCTTTGGAAAATATGATGGGCAGCAAATTTGTTGAGAAGGTGAGAGACTACTTGTTGTCTATGGGGGAAGAGGTTCAAGGAATCGCTATCATTCCAAGCAATCCCGATCAATCAAAACATTTGGAAATGGCGAGGATGCGCATCTTAAATGTATGGGTTGATTTTGTGAACTTACGCTGTGAAGAGTACAGTGATGATAGCCGCATTCCTGCTATGGTAAATTCTTGCTCTGGGATGTATGGATCTTCTAGAGTTTTGTTTGTTACTGATTTGAGCTTTAGGACATTAGTCACATTATCTTACTTTGGAATAAGGGTAGAGAGTTGTACATGGAAACATAATCATACATTGATTGGATATCTCCTAAGATTCTCCGAGAATATCTCTAATATAAACTCTATTTCAACTGGAGCAAGTAACCTCGAGTTTGGGCCAGACACATATTCTGGATTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

208

Amino Acids

23.96

Weight (kDa)

6.31

Isoelectric Point (pI)

46.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PolyA_pol	PF01743	41 - 121	1.2e-10	Poly A polymerase head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca	FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica	MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica	Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis	pycom05g03810 pycom10g03770
rosa_chinensis	RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata	RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora	Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii	Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa	Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha	Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana	Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	105
Acc16I	TGCGCA	1 cut(s)	308
Acc36I	ACCTGC	1 cut(s)	105
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	370
AclWI	GGATC	1 cut(s)	418
AcsI	RAATTY	3 cut(s)	149, 194, 388
AfaI	GTAC	3 cut(s)	18, 356, 496
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	6 cut(s)	38, 53, 68, 154, 245, 573
AluBI	AGCT	3 cut(s)	104, 136, 444
AluI	AGCT	3 cut(s)	104, 136, 444
Alw26I	GTCTC	1 cut(s)	207
AlwI	GGATC	1 cut(s)	418
Ama87I	CYCGRG	1 cut(s)	590
AoxI	GGCC	1 cut(s)	599
ApeKI	GCWGC	2 cut(s)	73, 189
ApoI	RAATTY	3 cut(s)	149, 194, 388
Asp700I	GAANNNNTTC	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	2 cut(s)	124, 599
AsuHPI	GGTGA	1 cut(s)	220
AvaI	CYCGRG	1 cut(s)	590
AvaII	GGWCC	1 cut(s)	124
BbvI	GCAGC	2 cut(s)	60, 201
BccI	CCATC	2 cut(s)	115, 178
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	2 cut(s)	140, 417
BfuAI	ACCTGC	1 cut(s)	105
BglII	AGATCT	1 cut(s)	60
BisI	GCNGC	3 cut(s)	74, 190, 370
BlsI	GCNGC	3 cut(s)	75, 191, 371
Bme18I	GGWCC	1 cut(s)	124
BmeT110I	CYCGRG	1 cut(s)	590
BmgT120I	GGNCC	2 cut(s)	124, 599
BmsI	GCATC	2 cut(s)	294, 318
BoxI	GACNNNNGTC	1 cut(s)	455
BplI	GAGNNNNNCTC	2 cut(s)	536, 568
BpmI	CTGGAG	1 cut(s)	597
Bsa29I	ATCGAT	1 cut(s)	162
BsaBI	GATNNNNATC	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	580
Bse8I	GATNNNNATC	1 cut(s)	308
BseCI	ATCGAT	1 cut(s)	162
BseGI	GGATG	3 cut(s)	126, 309, 408
BseJI	GATNNNNATC	1 cut(s)	308
BseNI	ACTGG	1 cut(s)	580
BseXI	GCAGC	2 cut(s)	60, 201
BshFI	GGCC	1 cut(s)	601
BshVI	ATCGAT	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	590
BsmAI	GTCTC	1 cut(s)	207
BsmI	GAATGC	1 cut(s)	372
BsnI	GGCC	1 cut(s)	601
BsoBI	CYCGRG	1 cut(s)	590
Bsp1407I	TGTACA	2 cut(s)	16, 494
Bsp143I	GATC	3 cut(s)	60, 274, 410
BspACI	CCGC	1 cut(s)	370
BspANI	GGCC	1 cut(s)	601
BspDI	ATCGAT	1 cut(s)	162
BspMI	ACCTGC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	418
BsrGI	TGTACA	2 cut(s)	16, 494
BsrI	ACTGG	1 cut(s)	580
BssMI	GATC	3 cut(s)	60, 274, 410
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	3 cut(s)	48, 231, 345
BstAUI	TGTACA	2 cut(s)	16, 494
BstDEI	CTNAG	2 cut(s)	77, 533
BstF5I	GGATG	3 cut(s)	126, 309, 408
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	3 cut(s)	63, 277, 413
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	3 cut(s)	60, 274, 410
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNSI	RCATGY	1 cut(s)	23
BstPAI	GACNNNNGTC	1 cut(s)	455
BstV1I	GCAGC	2 cut(s)	60, 201
BstX2I	RGATCY	2 cut(s)	60, 410
BstYI	RGATCY	2 cut(s)	60, 410
Bsu15I	ATCGAT	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	601
BsuTUI	ATCGAT	1 cut(s)	162
BtsCI	GGATG	3 cut(s)	126, 309, 408
BtsIMutI	CAGTG	1 cut(s)	364
BveI	ACCTGC	1 cut(s)	105
CfoI	GCGC	1 cut(s)	309
Cfr13I	GGNCC	2 cut(s)	124, 599
ClaI	ATCGAT	1 cut(s)	162
Csp6I	GTAC	3 cut(s)	17, 355, 495
CviAII	CATG	3 cut(s)	20, 108, 498
CviJI	RGCY	6 cut(s)	73, 104, 136, 369, 444, 601
CviKI_1	RGCY	6 cut(s)	73, 104, 136, 369, 444, 601
CviQI	GTAC	3 cut(s)	17, 355, 495
DdeI	CTNAG	2 cut(s)	77, 533
DpnI	GATC	3 cut(s)	62, 276, 412
DpnII	GATC	3 cut(s)	60, 274, 410
Eam1104I	CTCTTC	3 cut(s)	48, 231, 345
EarI	CTCTTC	3 cut(s)	48, 231, 345
Eco32I	GATATC	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	124
Eco88I	CYCGRG	1 cut(s)	590
EcoRV	GATATC	1 cut(s)	527
FaeI	CATG	3 cut(s)	23, 111, 501
FatI	CATG	3 cut(s)	19, 107, 497
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	74, 190, 370
FokI	GGATG	3 cut(s)	133, 316, 415
Fsp4HI	GCNGC	3 cut(s)	74, 190, 370
FspAI	RTGCGCAY	1 cut(s)	308
FspBI	CTAG	2 cut(s)	140, 417
FspI	TGCGCA	1 cut(s)	308
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	3 cut(s)	74, 190, 370
GsuI	CTGGAG	1 cut(s)	597
HaeIII	GGCC	1 cut(s)	601
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	3 cut(s)	23, 111, 501
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	2 cut(s)	249, 537
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	2 cut(s)	6, 337
Hpy188I	TCNGA	1 cut(s)	544
Hpy188III	TCNNGA	3 cut(s)	272, 417, 615
Hpy8I	GTNNAC	2 cut(s)	6, 337
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	2 cut(s)	77, 533
Hsp92II	CATG	3 cut(s)	23, 111, 501
HspAI	GCGC	1 cut(s)	307
Kzo9I	GATC	3 cut(s)	60, 274, 410
LmnI	GCTCC	1 cut(s)	578
LpnPI	CCDG	7 cut(s)	27, 100, 384, 390, 561, 600, 615
Lsp1109I	GCAGC	2 cut(s)	60, 201
LweI	GCATC	2 cut(s)	294, 318
MaeI	CTAG	2 cut(s)	140, 417
MaeIII	GTNAC	3 cut(s)	430, 457, 584
MalI	GATC	3 cut(s)	62, 276, 412
MboI	GATC	3 cut(s)	60, 274, 410
MboII	GAAGA	5 cut(s)	65, 70, 248, 362, 405
MflI	RGATCY	2 cut(s)	60, 410
MluCI	AATT	4 cut(s)	48, 149, 194, 388
MnlI	CCTC	3 cut(s)	232, 294, 599
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	1 cut(s)	314
MslI	CAYNNNNRTG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeII	GATC	3 cut(s)	60, 274, 410
NlaIII	CATG	3 cut(s)	23, 111, 501
NmuCI	GTSAC	1 cut(s)	457
NsbI	TGCGCA	1 cut(s)	308
NspI	RCATGY	1 cut(s)	23
PaeR7I	CTCGAG	1 cut(s)	590
PaqCI	CACCTGC	1 cut(s)	105
PciI	ACATGT	1 cut(s)	19
PctI	GAATGC	1 cut(s)	372
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	249, 537
PkrI	GCNGC	3 cut(s)	75, 191, 371
PscI	ACATGT	1 cut(s)	19
PshAI	GACNNNNGTC	1 cut(s)	455
PspPI	GGNCC	2 cut(s)	124, 599
PspXI	VCTCGAGB	1 cut(s)	590
PsuI	RGATCY	2 cut(s)	60, 410
RsaI	GTAC	3 cut(s)	18, 356, 496
RsaNI	GTAC	3 cut(s)	17, 355, 495
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	3 cut(s)	74, 190, 370
Sau3AI	GATC	3 cut(s)	60, 274, 410
Sau96I	GGNCC	2 cut(s)	124, 599
SetI	ASST	8 cut(s)	16, 106, 119, 138, 210, 243, 446, 591
SfaNI	GCATC	2 cut(s)	294, 318
Sfr274I	CTCGAG	1 cut(s)	590
SinI	GGWCC	1 cut(s)	124
SlaI	CTCGAG	1 cut(s)	590
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	4 cut(s)	48, 149, 194, 388
SsiI	CCGC	1 cut(s)	370
SspMI	CTAG	2 cut(s)	140, 417
TaaI	ACNGT	1 cut(s)	359
TaqI	TCGA	2 cut(s)	162, 591
TasI	AATT	4 cut(s)	48, 149, 194, 388
TatI	WGTACW	3 cut(s)	16, 354, 494
TauI	GCSGC	1 cut(s)	372
TfiI	GAWTC	2 cut(s)	249, 537
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	1 cut(s)	364
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	2 cut(s)	73, 189
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	2 cut(s)	60, 96
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	3 cut(s)	149, 194, 388
XbaI	TCTAGA	1 cut(s)	416
XceI	RCATGY	1 cut(s)	23
XhoI	CTCGAG	1 cut(s)	590
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	2 cut(s)	140, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.