Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000288

Physical Location & Seq

Genomic Coordinates Forward (+)

30047064 .. 30048504

Gene Structure 1441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG166700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTCTACACTTTCATATCCCACCGACGTCTTAGACAAGAATCTCAAACCAGAAGATCCAAGAGCATTTTTTGTAGAAGCTGAAAGGGCCATAAATAATCTAGCTTTGAGACGAGAAAATCGTCCCCATGTCTTTAGCTTTAAATGCTCTCTGTGTTCGTCTCTTTCTCACTCTCTGTGTACATGGATGGGTGAGTGTGGCTGTCCAGCCTATCCTGATTTTTGTCTTGGTGGAGCTGGTCTAGATAAATTCTGGGATGTAAAGCCATTACTTAATGGAAAGGAGATCATGGATGCTTTGCAGCTTAAATCTGGAGGACCACTTGTCAGTAAATGGCAAAGGAAGCTACTTGCCTGGCAGCTTGCTCATCCTTTGGGGACTGCAGAGGAATGCCTCAAGTGGCTGAAGGAAACACACTCTTCAAGTACTGTTTATGTACATTATACAACTGATTATCTTCACCCATGTCCACAGAGTTGGTTCCAAAAGATAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

165

Amino Acids

18.73

Weight (kDa)

7.58

Isoelectric Point (pI)

39.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca	FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica	MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica	Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis	pycom05g03810 pycom10g03770
rosa_chinensis	RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata	RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora	Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii	Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa	Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha	Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana	Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	30
AccI	GTMKAC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	248
AcuI	CTGAAG	1 cut(s)	425
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	3 cut(s)	181, 427, 438
AgsI	TTSAA	1 cut(s)	423
AhdI	GACNNNNNGTC	1 cut(s)	323
AjnI	CCWGG	1 cut(s)	353
AluBI	AGCT	7 cut(s)	80, 104, 138, 236, 304, 346, 361
AluI	AGCT	7 cut(s)	80, 104, 138, 236, 304, 346, 361
Alw26I	GTCTC	2 cut(s)	103, 165
AlwI	GGATC	1 cut(s)	50
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	2 cut(s)	301, 358
ApoI	RAATTY	1 cut(s)	248
AspS9I	GGNCC	2 cut(s)	87, 317
AsuHPI	GGTGA	2 cut(s)	203, 452
AvaII	GGWCC	1 cut(s)	317
BbvI	GCAGC	2 cut(s)	313, 370
BccI	CCATC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	355
BcoDI	GTCTC	2 cut(s)	103, 165
BfaI	CTAG	2 cut(s)	101, 242
BfmI	CTRYAG	1 cut(s)	381
BisI	GCNGC	2 cut(s)	302, 359
BlsI	GCNGC	2 cut(s)	303, 360
BmcAI	AGTACT	1 cut(s)	427
Bme1390I	CCNGG	1 cut(s)	355
Bme18I	GGWCC	1 cut(s)	317
BmeRI	GACNNNNNGTC	1 cut(s)	323
BmgT120I	GGNCC	2 cut(s)	87, 317
BmiI	GGNNCC	1 cut(s)	482
BmrFI	CCNGG	1 cut(s)	355
BmsI	GCATC	1 cut(s)	283
BpmI	CTGGAG	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	355
BseGI	GGATG	4 cut(s)	192, 262, 298, 367
BseXI	GCAGC	2 cut(s)	313, 370
BshFI	GGCC	1 cut(s)	89
BslFI	GGGAC	2 cut(s)	108, 391
BsmAI	GTCTC	2 cut(s)	103, 165
BsmBI	CGTCTC	2 cut(s)	103, 165
BsmFI	GGGAC	2 cut(s)	108, 391
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	89
Bsp1407I	TGTACA	2 cut(s)	179, 436
Bsp143I	GATC	2 cut(s)	55, 285
BspANI	GGCC	1 cut(s)	89
BspLI	GGNNCC	1 cut(s)	482
BspMAI	CTGCAG	1 cut(s)	385
BspPI	GGATC	1 cut(s)	50
BsrGI	TGTACA	2 cut(s)	179, 436
BssMI	GATC	2 cut(s)	55, 285
BssNI	GRCGYC	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	355
Bst4CI	ACNGT	1 cut(s)	430
Bst6I	CTCTTC	1 cut(s)	424
BstACI	GRCGYC	1 cut(s)	27
BstAUI	TGTACA	2 cut(s)	179, 436
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	1 cut(s)	31
BstF5I	GGATG	4 cut(s)	192, 262, 298, 367
BstKTI	GATC	2 cut(s)	58, 288
BstMAI	GTCTC	2 cut(s)	103, 165
BstMBI	GATC	2 cut(s)	55, 285
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 144, 343
BstNI	CCWGG	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	353
BstSFI	CTRYAG	1 cut(s)	381
BstV1I	GCAGC	2 cut(s)	313, 370
BstX2I	RGATCY	1 cut(s)	55
BstXI	CCANNNNNNTGG	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	4 cut(s)	192, 262, 298, 367
Cac8I	GCNNGC	1 cut(s)	363
Cfr13I	GGNCC	2 cut(s)	87, 317
Csp6I	GTAC	3 cut(s)	180, 426, 437
CviAII	CATG	4 cut(s)	128, 183, 289, 465
CviQI	GTAC	3 cut(s)	180, 426, 437
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	2 cut(s)	57, 287
DpnII	GATC	2 cut(s)	55, 285
DraI	TTTAAA	1 cut(s)	142
DriI	GACNNNNNGTC	1 cut(s)	323
Eam1104I	CTCTTC	1 cut(s)	424
Eam1105I	GACNNNNNGTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	317
Eco57I	CTGAAG	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	353
Esp3I	CGTCTC	2 cut(s)	103, 165
FaeI	CATG	4 cut(s)	131, 186, 292, 468
FaiI	YATR	9 cut(s)	16, 92, 129, 184, 290, 435, 444, 466, 496
FaqI	GGGAC	2 cut(s)	108, 391
FatI	CATG	4 cut(s)	127, 182, 288, 464
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	302, 359
FokI	GGATG	4 cut(s)	199, 269, 305, 354
Fsp4HI	GCNGC	2 cut(s)	302, 359
FspBI	CTAG	2 cut(s)	101, 242
GluI	GCNGC	2 cut(s)	302, 359
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	89
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	4 cut(s)	131, 186, 292, 468
HinfI	GANTC	1 cut(s)	40
HphI	GGTGA	2 cut(s)	203, 452
Hpy166II	GTNNAC	3 cut(s)	6, 180, 470
Hpy188III	TCNNGA	3 cut(s)	215, 242, 312
Hpy8I	GTNNAC	3 cut(s)	6, 180, 470
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	301, 383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 144, 343
HpyF3I	CTNAG	1 cut(s)	31
HpySE526I	ACGT	1 cut(s)	27
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	4 cut(s)	131, 186, 292, 468
Kzo9I	GATC	2 cut(s)	55, 285
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	8 cut(s)	63, 219, 222, 228, 238, 297, 340, 367
Lsp1109I	GCAGC	2 cut(s)	313, 370
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	2 cut(s)	101, 242
MaeII	ACGT	1 cut(s)	27
MalI	GATC	2 cut(s)	57, 287
MboI	GATC	2 cut(s)	55, 285
MboII	GAAGA	3 cut(s)	65, 411, 449
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	1 cut(s)	248
MnlI	CCTC	3 cut(s)	308, 379, 404
MseI	TTAA	3 cut(s)	141, 273, 306
MspR9I	CCNGG	1 cut(s)	355
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	355
MwoI	GCNNNNNNNGC	3 cut(s)	86, 144, 343
NdeII	GATC	2 cut(s)	55, 285
NlaIII	CATG	4 cut(s)	131, 186, 292, 468
NlaIV	GGNNCC	1 cut(s)	482
PcsI	WCGNNNNNNNCGW	1 cut(s)	118
PctI	GAATGC	1 cut(s)	395
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	303, 360
Psp6I	CCWGG	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	353
PspN4I	GGNNCC	1 cut(s)	482
PspPI	GGNCC	2 cut(s)	87, 317
PstI	CTGCAG	1 cut(s)	385
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	3 cut(s)	181, 427, 438
RsaNI	GTAC	3 cut(s)	180, 426, 437
SaqAI	TTAA	3 cut(s)	141, 273, 306
SatI	GCNGC	2 cut(s)	302, 359
Sau3AI	GATC	2 cut(s)	55, 285
Sau96I	GGNCC	2 cut(s)	87, 317
ScaI	AGTACT	1 cut(s)	427
ScrFI	CCNGG	1 cut(s)	355
SetI	ASST	8 cut(s)	30, 82, 106, 140, 238, 306, 348, 363
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	381
SinI	GGWCC	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	1 cut(s)	248
SspMI	CTAG	2 cut(s)	101, 242
StyD4I	CCNGG	1 cut(s)	353
TaaI	ACNGT	1 cut(s)	430
TaiI	ACGT	1 cut(s)	30
TasI	AATT	1 cut(s)	248
TatI	WGTACW	3 cut(s)	179, 425, 436
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	3 cut(s)	141, 273, 306
Tru9I	TTAA	3 cut(s)	141, 273, 306
TseI	GCWGC	2 cut(s)	301, 358
VpaK11BI	GGWCC	1 cut(s)	317
XapI	RAATTY	1 cut(s)	248
XbaI	TCTAGA	1 cut(s)	241
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	2 cut(s)	101, 242
ZraI	GACGTC	1 cut(s)	28
ZrmI	AGTACT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.