Rh4BG166600

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
30044191 .. 30047030
2840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG166600.1

Sequence Viewer

Length: 654 bp
ATGGAGGATCCGCTACGAGTTCTTCGAGCTATCCGTTTTGGTGCAAGGTTCGGATTCATACTAGATGAACAACTAAAGGAAGCTGCTGCCTGTGATGAAGTGAAAGCTGCTCTATCAGCTAAAATTAGCAGAGAGCGAATTGGAGCTGAAATTGATCTGATGATCTCCGGAAACCAACCTGCCCAAGCTATGACCTATATATGTGACTTGAAGTTATTTTGGGTTGTCTTCAGTCTTCATCCACAGTGTGAGCCATCAGAAGGATGCGACAGCGATTGTGTTGCGTACTTGGATTGTACTTGCAATCTTATTCAATTAGTGGGGCACTCTACCTTCAATGACGAACAAAGAAGGCTCTCCTTTTATGCTGCAATGTTCCTTCCACTTAGGAAGACCATGTATAAAGATAGGAAAGCAAAAGATGTTCCTGTCGTGAATTATATTTTCAGAGACTCCCTTAAACAAAGAGTCAGCGATGCTGAAACTGTTATTAATTTACACAATGCATTGGAGAAGTTTTTGTCTTTGCTTCCTCACTTTGTACGAAATGGGGATGTAAAACTCGCCGAAGTTGATTTGGGAAGAGAATATGTTGATGTCCCTCTTACATCAAAAGAATCAAAACTCCGAGTGTTAACAGGGTTTCTTTTATGA

Protein Analysis

217

Amino Acids

24.62

Weight (kDa)

6.12

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis pycom05g03810 pycom10g03770
rosa_chinensis RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 187
AccIII TCCGGA 1 cut(s) 167
AciI CCGC 1 cut(s) 11
AclWI GGATC 2 cut(s) 2, 15
AcuI CTGAAG 1 cut(s) 214
AdeI CACNNNGTG 1 cut(s) 248
AfaI GTAC 3 cut(s) 287, 298, 543
AfiI CCNNNNNNNGG 1 cut(s) 260
AgsI TTSAA 3 cut(s) 211, 314, 337
AluBI AGCT 6 cut(s) 29, 83, 107, 119, 146, 188
AluI AGCT 6 cut(s) 29, 83, 107, 119, 146, 188
Alw26I GTCTC 1 cut(s) 444
AlwI GGATC 2 cut(s) 2, 15
Aor13HI TCCGGA 1 cut(s) 167
ApeKI GCWGC 4 cut(s) 83, 86, 107, 368
AseI ATTAAT 1 cut(s) 492
BaeGI GKGCMC 1 cut(s) 327
BamHI GGATCC 1 cut(s) 7
BbsI GAAGAC 3 cut(s) 220, 227, 398
BbvI GCAGC 4 cut(s) 70, 73, 94, 355
BccI CCATC 1 cut(s) 262
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BcoDI GTCTC 1 cut(s) 444
BfaI CTAG 1 cut(s) 62
BfuAI ACCTGC 1 cut(s) 187
BisI GCNGC 4 cut(s) 84, 87, 108, 369
BlsI GCNGC 4 cut(s) 85, 88, 109, 370
BmiI GGNNCC 1 cut(s) 9
BmsI GCATC 2 cut(s) 254, 466
BpiI GAAGAC 3 cut(s) 220, 227, 398
BsaWI WCCGGW 1 cut(s) 167
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse3DI GCAATG 1 cut(s) 378
BseAI TCCGGA 1 cut(s) 167
BseGI GGATG 3 cut(s) 238, 269, 559
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMI GCAATG 1 cut(s) 378
BseSI GKGCMC 1 cut(s) 327
BseXI GCAGC 4 cut(s) 70, 73, 94, 355
BsiSI CCGG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 584
BslI CCNNNNNNNGG 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 444
BsmFI GGGAC 1 cut(s) 584
Bsp1286I GDGCHC 1 cut(s) 327
Bsp13I TCCGGA 1 cut(s) 167
Bsp143I GATC 3 cut(s) 7, 154, 162
BspACI CCGC 1 cut(s) 11
BspEI TCCGGA 1 cut(s) 167
BspLI GGNNCC 1 cut(s) 9
BspMI ACCTGC 1 cut(s) 187
BspPI GGATC 2 cut(s) 2, 15
BsrDI GCAATG 1 cut(s) 378
BssMI GATC 3 cut(s) 7, 154, 162
Bst4CI ACNGT 2 cut(s) 246, 487
Bst6I CTCTTC 1 cut(s) 577
BstDEI CTNAG 1 cut(s) 386
BstF5I GGATG 3 cut(s) 238, 269, 559
BstKTI GATC 3 cut(s) 10, 157, 165
BstMAI GTCTC 1 cut(s) 444
BstMBI GATC 3 cut(s) 7, 154, 162
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstSLI GKGCMC 1 cut(s) 327
BstV1I GCAGC 4 cut(s) 70, 73, 94, 355
BstV2I GAAGAC 3 cut(s) 220, 227, 398
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BtgZI GCGATG 1 cut(s) 489
BtsCI GGATG 3 cut(s) 238, 269, 559
BtsIMutI CAGTG 1 cut(s) 251
BveI ACCTGC 1 cut(s) 187
Csp6I GTAC 3 cut(s) 286, 297, 542
CviAII CATG 1 cut(s) 397
CviJI RGCY 8 cut(s) 29, 83, 107, 119, 146, 188, 253, 355
CviKI_1 RGCY 8 cut(s) 29, 83, 107, 119, 146, 188, 253, 355
CviQI GTAC 3 cut(s) 286, 297, 542
DdeI CTNAG 1 cut(s) 386
DpnI GATC 3 cut(s) 9, 156, 164
DpnII GATC 3 cut(s) 7, 154, 162
DraIII CACNNNGTG 1 cut(s) 248
Eam1104I CTCTTC 1 cut(s) 577
EarI CTCTTC 1 cut(s) 577
Eco57I CTGAAG 1 cut(s) 214
EcoT22I ATGCAT 1 cut(s) 508
FaeI CATG 1 cut(s) 400
FaqI GGGAC 1 cut(s) 584
FatI CATG 1 cut(s) 396
Fnu4HI GCNGC 4 cut(s) 84, 87, 108, 369
FokI GGATG 3 cut(s) 225, 276, 566
Fsp4HI GCNGC 4 cut(s) 84, 87, 108, 369
FspBI CTAG 1 cut(s) 62
GluI GCNGC 4 cut(s) 84, 87, 108, 369
HapII CCGG 1 cut(s) 168
Hin1II CATG 1 cut(s) 400
HincII GTYRAC 1 cut(s) 636
HindII GTYRAC 1 cut(s) 636
HinfI GANTC 4 cut(s) 54, 452, 468, 617
HpaI GTTAAC 1 cut(s) 636
HpaII CCGG 1 cut(s) 168
Hpy166II GTNNAC 1 cut(s) 636
Hpy188I TCNGA 5 cut(s) 53, 159, 259, 449, 629
Hpy188III TCNNGA 2 cut(s) 168, 433
Hpy8I GTNNAC 1 cut(s) 636
HpyAV CCTTC 4 cut(s) 254, 343, 345, 389
HpyCH4III ACNGT 2 cut(s) 246, 487
HpyCH4V TGCA 4 cut(s) 44, 303, 371, 506
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 1 cut(s) 386
Hsp92II CATG 1 cut(s) 400
Kpn2I TCCGGA 1 cut(s) 167
KspAI GTTAAC 1 cut(s) 636
Kzo9I GATC 3 cut(s) 7, 154, 162
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 5 cut(s) 103, 181, 192, 441, 624
Lsp1109I GCAGC 4 cut(s) 70, 73, 94, 355
LweI GCATC 2 cut(s) 254, 466
MaeI CTAG 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 203
MalI GATC 3 cut(s) 9, 156, 164
MboI GATC 3 cut(s) 7, 154, 162
MboII GAAGA 5 cut(s) 14, 220, 227, 403, 594
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 327
MluCI AATT 6 cut(s) 123, 138, 150, 314, 436, 493
MlyI GAGTC 2 cut(s) 446, 477
MnlI CCTC 2 cut(s) 543, 612
Mph1103I ATGCAT 1 cut(s) 508
MroI TCCGGA 1 cut(s) 167
MseI TTAA 3 cut(s) 459, 492, 635
MspI CCGG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 116
NdeII GATC 3 cut(s) 7, 154, 162
NlaIII CATG 1 cut(s) 400
NlaIV GGNNCC 1 cut(s) 9
NmuCI GTSAC 1 cut(s) 203
NsiI ATGCAT 1 cut(s) 508
PcsI WCGNNNNNNNCGW 2 cut(s) 22, 31
PfeI GAWTC 2 cut(s) 54, 617
PkrI GCNGC 4 cut(s) 85, 88, 109, 370
PleI GAGTC 2 cut(s) 446, 476
PpsI GAGTC 2 cut(s) 446, 476
PshBI ATTAAT 1 cut(s) 492
PspN4I GGNNCC 1 cut(s) 9
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 3 cut(s) 287, 298, 543
RsaNI GTAC 3 cut(s) 286, 297, 542
SaqAI TTAA 3 cut(s) 459, 492, 635
SatI GCNGC 4 cut(s) 84, 87, 108, 369
Sau3AI GATC 3 cut(s) 7, 154, 162
SchI GAGTC 2 cut(s) 446, 477
SduI GDGCHC 1 cut(s) 327
SfaNI GCATC 2 cut(s) 254, 466
Sse9I AATT 6 cut(s) 123, 138, 150, 314, 436, 493
SsiI CCGC 1 cut(s) 11
SspMI CTAG 1 cut(s) 62
TaaI ACNGT 2 cut(s) 246, 487
TaqI TCGA 1 cut(s) 25
TasI AATT 6 cut(s) 123, 138, 150, 314, 436, 493
TatI WGTACW 1 cut(s) 296
TfiI GAWTC 2 cut(s) 54, 617
Tru1I TTAA 3 cut(s) 459, 492, 635
Tru9I TTAA 3 cut(s) 459, 492, 635
TscAI CASTG 1 cut(s) 251
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 4 cut(s) 83, 86, 107, 368
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 4 cut(s) 46, 81, 111, 227
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 251
VspI ATTAAT 1 cut(s) 492
XspI CTAG 1 cut(s) 62
Zsp2I ATGCAT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.