Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000288

Physical Location & Seq

Genomic Coordinates Reverse (-)

35161229 .. 35162357

Gene Structure 1129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19446

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGAGGATCCAGTGCGTGGTCTGCGAGCTGTTCGTATTGGCACAAGGGATGGATTCACACTAGTTGAACAGCTAAAGGAAGCTGCTGCCAGTGATGAAGTGAAGGCAGCTCTTTCTGCTGAAGTTAGCAGAGAGCGAATTGGAGCTGAAATTGATCTCATGATATCTGGAGACCTACCTGTCCAAGCTATGACCTTACTGTGTGACTTCAATTGGCTTTGGTATGTGTTCCGTCTTCATCCTCAGTGTGAGCCGCTATCAGACAGGGCTTGTAGGATCTCCTTCTATGCTGCTATGTTCCTCCCACTTAGGACGACCATGTACAAAGACGAGAGAGTAGAAGAGATTCCTGTGGTGAATTTCATTTTCAAATACTCGCTTAAGAGAAAAGTCAGCGATGCAGAAACTGTTTTAAAGATAGACAATGCATTGGAAAAGTTCTTGCCTTTGCTTCCGCACTTTGGATCCAGTGGATCTGACGTACAACTCGCTGAAGATGACTTGGGAACCGGAGAGTGTGTTGATGTTCTTTCTGTTACTTCAAAAGAATCACAACTCCGAGTACTGATGGGATTTCTTCTACGAGAAATTAAAGATTTTTGGACAGTTTCATTGCTGCTGCTGTGTTGTTCAGAAGATCCTTTGAACAAGAACTTTACATTAGAGGATCGAACAGCTTTGTTTAGAAAAGTCCAAAGCGCCATAATTGATGATCTAGGTCTTGACAGAGTCTGGGTTGTAAAGCCATTACTCAGTGGAACGGATATTATTAAACATCTGGACCTTAAATCTGGAGGACCAGTTGTCAGTCAATGGAAACGGAAAGTATTTGCATGGCAGCTCGCTCATCCTTCAGGGACTAAAGAGGAATGCAGAGATTGGATGAAGAAAACATTCTTCAAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

302

Amino Acids

34.39

Weight (kDa)

5.74

Isoelectric Point (pI)

33.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca	FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica	MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica	Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis	pycom05g03810 pycom10g03770
rosa_chinensis	RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata	RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora	Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii	Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa	Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha	Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana	Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccB7I	CCANNNNNTGG	1 cut(s)	17
AciI	CCGC	2 cut(s)	254, 455
AclWI	GGATC	8 cut(s)	2, 15, 284, 459, 472, 481, 632, 675
AcsI	RAATTY	1 cut(s)	358
AcuI	CTGAAG	3 cut(s)	141, 513, 837
AfaI	GTAC	4 cut(s)	323, 483, 564, 905
AfiI	CCNNNNNNNGG	2 cut(s)	17, 461
AflII	CTTAAG	1 cut(s)	380
AgsI	TTSAA	6 cut(s)	68, 211, 370, 543, 646, 901
AhdI	GACNNNNNGTC	1 cut(s)	803
AhlI	ACTAGT	1 cut(s)	61
AluBI	AGCT	8 cut(s)	29, 73, 83, 110, 146, 188, 677, 841
AluI	AGCT	8 cut(s)	29, 73, 83, 110, 146, 188, 677, 841
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	8 cut(s)	2, 15, 284, 459, 472, 481, 632, 675
AlwNI	CAGNNNCTG	2 cut(s)	407, 732
ApeKI	GCWGC	7 cut(s)	83, 86, 107, 290, 616, 619, 838
ApoI	RAATTY	1 cut(s)	358
Asp700I	GAANNNNTTC	2 cut(s)	345, 893
AspLEI	GCGC	1 cut(s)	701
AspS9I	GGNCC	2 cut(s)	781, 797
AsuHPI	GGTGA	1 cut(s)	367
AvaII	GGWCC	2 cut(s)	781, 797
BamHI	GGATCC	2 cut(s)	7, 464
BbsI	GAAGAC	1 cut(s)	227
BbvI	GCAGC	7 cut(s)	70, 73, 119, 277, 603, 606, 850
BccI	CCATC	2 cut(s)	44, 562
BcoDI	GTCTC	1 cut(s)	165
BcuI	ACTAGT	1 cut(s)	61
BfaI	CTAG	3 cut(s)	62, 716, 907
BfoI	RGCGCY	1 cut(s)	702
BfrI	CTTAAG	1 cut(s)	380
BisI	GCNGC	8 cut(s)	84, 87, 108, 254, 291, 617, 620, 839
BlsI	GCNGC	8 cut(s)	85, 88, 109, 255, 292, 618, 621, 840
BmcAI	AGTACT	2 cut(s)	564, 905
Bme18I	GGWCC	2 cut(s)	781, 797
BmeRI	GACNNNNNGTC	1 cut(s)	803
BmgT120I	GGNCC	2 cut(s)	781, 797
BmiI	GGNNCC	3 cut(s)	9, 466, 508
BmsI	GCATC	1 cut(s)	388
BpiI	GAAGAC	1 cut(s)	227
BpmI	CTGGAG	2 cut(s)	189, 813
BsaI	GGTCTC	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	509
BsaXI	ACNNNNNCTCC	4 cut(s)	504, 534, 786, 816
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 461
Bse1I	ACTGG	4 cut(s)	11, 90, 468, 800
Bse3DI	GCAATG	1 cut(s)	611
BseGI	GGATG	4 cut(s)	55, 238, 847, 888
BseLI	CCNNNNNNNGG	2 cut(s)	17, 461
BseMI	GCAATG	1 cut(s)	611
BseMII	CTCAG	2 cut(s)	257, 766
BseNI	ACTGG	4 cut(s)	11, 90, 468, 800
BseXI	GCAGC	7 cut(s)	70, 73, 119, 277, 603, 606, 850
BsiSI	CCGG	1 cut(s)	510
BslFI	GGGAC	1 cut(s)	871
BslI	CCNNNNNNNGG	2 cut(s)	17, 461
BsmAI	GTCTC	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	871
BsmI	GAATGC	1 cut(s)	875
Bso31I	GGTCTC	1 cut(s)	165
Bsp1407I	TGTACA	1 cut(s)	321
Bsp143I	GATC	8 cut(s)	7, 154, 276, 464, 473, 637, 667, 712
BspACI	CCGC	2 cut(s)	254, 455
BspCNI	CTCAG	2 cut(s)	256, 765
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	3 cut(s)	9, 466, 508
BspPI	GGATC	8 cut(s)	2, 15, 284, 459, 472, 481, 632, 675
BspTI	CTTAAG	1 cut(s)	380
BspTNI	GGTCTC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	611
BsrGI	TGTACA	1 cut(s)	321
BsrI	ACTGG	4 cut(s)	11, 90, 468, 800
BssMI	GATC	8 cut(s)	7, 154, 276, 464, 473, 637, 667, 712
Bst4CI	ACNGT	3 cut(s)	201, 409, 607
Bst6I	CTCTTC	1 cut(s)	336
BstAFI	CTTAAG	1 cut(s)	380
BstAUI	TGTACA	1 cut(s)	321
BstC8I	GCNNGC	2 cut(s)	27, 843
BstDEI	CTNAG	3 cut(s)	243, 308, 752
BstF5I	GGATG	4 cut(s)	55, 238, 847, 888
BstH2I	RGCGCY	1 cut(s)	702
BstHHI	GCGC	1 cut(s)	701
BstKTI	GATC	8 cut(s)	10, 157, 279, 467, 476, 640, 670, 715
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	8 cut(s)	7, 154, 276, 464, 473, 637, 667, 712
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 116
BstV1I	GCAGC	7 cut(s)	70, 73, 119, 277, 603, 606, 850
BstV2I	GAAGAC	1 cut(s)	227
BstX2I	RGATCY	5 cut(s)	7, 276, 464, 473, 637
BstYI	RGATCY	5 cut(s)	7, 276, 464, 473, 637
BtgZI	GCGATG	1 cut(s)	411
BtsCI	GGATG	4 cut(s)	55, 238, 847, 888
BtsIMutI	CAGTG	5 cut(s)	18, 97, 251, 475, 760
Cac8I	GCNNGC	2 cut(s)	27, 843
CaiI	CAGNNNCTG	2 cut(s)	407, 732
CciI	TCATGA	1 cut(s)	159
CfoI	GCGC	1 cut(s)	701
Cfr13I	GGNCC	2 cut(s)	781, 797
Csp6I	GTAC	4 cut(s)	322, 482, 563, 904
CviAII	CATG	3 cut(s)	160, 319, 834
CviQI	GTAC	4 cut(s)	322, 482, 563, 904
DdeI	CTNAG	3 cut(s)	243, 308, 752
DpnI	GATC	8 cut(s)	9, 156, 278, 466, 475, 639, 669, 714
DpnII	GATC	8 cut(s)	7, 154, 276, 464, 473, 637, 667, 712
DraI	TTTAAA	1 cut(s)	414
DrdI	GACNNNNNNGTC	1 cut(s)	179
DriI	GACNNNNNGTC	1 cut(s)	803
DseDI	GACNNNNNNGTC	1 cut(s)	179
Eam1104I	CTCTTC	1 cut(s)	336
Eam1105I	GACNNNNNGTC	1 cut(s)	803
EarI	CTCTTC	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	165
Eco32I	GATATC	1 cut(s)	165
Eco47I	GGWCC	2 cut(s)	781, 797
Eco57I	CTGAAG	3 cut(s)	141, 513, 837
EcoRV	GATATC	1 cut(s)	165
EcoT22I	ATGCAT	1 cut(s)	430
FaeI	CATG	3 cut(s)	163, 322, 837
FaiI	YATR	8 cut(s)	161, 191, 225, 288, 296, 320, 704, 835
FaqI	GGGAC	1 cut(s)	871
FatI	CATG	3 cut(s)	159, 318, 833
Fnu4HI	GCNGC	8 cut(s)	84, 87, 108, 254, 291, 617, 620, 839
FokI	GGATG	4 cut(s)	62, 225, 834, 895
Fsp4HI	GCNGC	8 cut(s)	84, 87, 108, 254, 291, 617, 620, 839
FspBI	CTAG	3 cut(s)	62, 716, 907
GlaI	GCGC	1 cut(s)	700
GluI	GCNGC	8 cut(s)	84, 87, 108, 254, 291, 617, 620, 839
GsuI	CTGGAG	2 cut(s)	189, 813
HaeII	RGCGCY	1 cut(s)	702
HapII	CCGG	1 cut(s)	510
HhaI	GCGC	1 cut(s)	701
Hin1II	CATG	3 cut(s)	163, 322, 837
Hin6I	GCGC	1 cut(s)	699
HinP1I	GCGC	1 cut(s)	699
HinfI	GANTC	4 cut(s)	54, 346, 548, 729
HpaII	CCGG	1 cut(s)	510
HphI	GGTGA	1 cut(s)	367
Hpy188I	TCNGA	4 cut(s)	262, 478, 560, 634
Hpy188III	TCNNGA	5 cut(s)	160, 168, 722, 779, 792
HpyAV	CCTTC	3 cut(s)	97, 292, 861
HpyCH4III	ACNGT	3 cut(s)	201, 409, 607
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	4 cut(s)	401, 428, 833, 873
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 116
HpyF3I	CTNAG	3 cut(s)	243, 308, 752
HpySE526I	ACGT	1 cut(s)	480
Hsp92II	CATG	3 cut(s)	163, 322, 837
HspAI	GCGC	1 cut(s)	699
Kzo9I	GATC	8 cut(s)	7, 154, 276, 464, 473, 637, 667, 712
LmnI	GCTCC	1 cut(s)	143
Lsp1109I	GCAGC	7 cut(s)	70, 73, 119, 277, 603, 606, 850
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	3 cut(s)	62, 716, 907
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	2 cut(s)	203, 535
MalI	GATC	8 cut(s)	9, 156, 278, 466, 475, 639, 669, 714
MboI	GATC	8 cut(s)	7, 154, 276, 464, 473, 637, 667, 712
MboII	GAAGA	7 cut(s)	227, 353, 506, 569, 647, 889, 898
MfeI	CAATTG	1 cut(s)	211
MflI	RGATCY	5 cut(s)	7, 276, 464, 473, 637
MluCI	AATT	6 cut(s)	138, 150, 211, 358, 588, 705
MlyI	GAGTC	1 cut(s)	738
MnlI	CCTC	5 cut(s)	252, 311, 658, 788, 859
Mph1103I	ATGCAT	1 cut(s)	430
MroXI	GAANNNNTTC	2 cut(s)	345, 893
MseI	TTAA	5 cut(s)	381, 413, 591, 771, 786
MspCI	CTTAAG	1 cut(s)	380
MspI	CCGG	1 cut(s)	510
MunI	CAATTG	1 cut(s)	211
Mva1269I	GAATGC	1 cut(s)	875
MwoI	GCNNNNNNNGC	2 cut(s)	22, 116
NdeII	GATC	8 cut(s)	7, 154, 276, 464, 473, 637, 667, 712
NlaIII	CATG	3 cut(s)	163, 322, 837
NlaIV	GGNNCC	3 cut(s)	9, 466, 508
NmuCI	GTSAC	1 cut(s)	203
NsiI	ATGCAT	1 cut(s)	430
PagI	TCATGA	1 cut(s)	159
PctI	GAATGC	1 cut(s)	875
PdmI	GAANNNNTTC	2 cut(s)	345, 893
PfeI	GAWTC	3 cut(s)	54, 346, 548
PflFI	GACNNNGTC	1 cut(s)	728
PflMI	CCANNNNNTGG	1 cut(s)	17
PkrI	GCNGC	8 cut(s)	85, 88, 109, 255, 292, 618, 621, 840
PleI	GAGTC	1 cut(s)	737
PpsI	GAGTC	1 cut(s)	737
PspN4I	GGNNCC	3 cut(s)	9, 466, 508
PspPI	GGNCC	2 cut(s)	781, 797
PstNI	CAGNNNCTG	2 cut(s)	407, 732
PsuI	RGATCY	5 cut(s)	7, 276, 464, 473, 637
PsyI	GACNNNGTC	1 cut(s)	728
RsaI	GTAC	4 cut(s)	323, 483, 564, 905
RsaNI	GTAC	4 cut(s)	322, 482, 563, 904
SaqAI	TTAA	5 cut(s)	381, 413, 591, 771, 786
SatI	GCNGC	8 cut(s)	84, 87, 108, 254, 291, 617, 620, 839
Sau3AI	GATC	8 cut(s)	7, 154, 276, 464, 473, 637, 667, 712
Sau96I	GGNCC	2 cut(s)	781, 797
ScaI	AGTACT	2 cut(s)	564, 905
SchI	GAGTC	1 cut(s)	738
SfaNI	GCATC	1 cut(s)	388
SinI	GGWCC	2 cut(s)	781, 797
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
SpeI	ACTAGT	1 cut(s)	61
Sse9I	AATT	6 cut(s)	138, 150, 211, 358, 588, 705
SsiI	CCGC	2 cut(s)	254, 455
SspMI	CTAG	3 cut(s)	62, 716, 907
TaaI	ACNGT	3 cut(s)	201, 409, 607
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	1 cut(s)	670
TasI	AATT	6 cut(s)	138, 150, 211, 358, 588, 705
TatI	WGTACW	3 cut(s)	321, 562, 903
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	3 cut(s)	54, 346, 548
Tru1I	TTAA	5 cut(s)	381, 413, 591, 771, 786
Tru9I	TTAA	5 cut(s)	381, 413, 591, 771, 786
TscAI	CASTG	5 cut(s)	18, 97, 251, 475, 760
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	7 cut(s)	83, 86, 107, 290, 616, 619, 838
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	5 cut(s)	111, 227, 352, 600, 899
TspGWI	ACGGA	3 cut(s)	221, 776, 835
TspRI	CASTG	5 cut(s)	18, 97, 251, 475, 760
Tth111I	GACNNNGTC	1 cut(s)	728
Van91I	CCANNNNNTGG	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	380
VpaK11BI	GGWCC	2 cut(s)	781, 797
XapI	RAATTY	1 cut(s)	358
XmnI	GAANNNNTTC	2 cut(s)	345, 893
XspI	CTAG	3 cut(s)	62, 716, 907
ZrmI	AGTACT	2 cut(s)	564, 905
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.