RLG00000005141

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
65342656 .. 65343246
591 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005141

Sequence Viewer

Length: 567 bp
ATGAATACACACCATGAGGTGGACAAGTTTCTATCTTTGTTTGCTCGCTTTGAACCCAATGGGGATCATGTACAACTCGCCGTAGTTGATTTGGGAAGTGAATGTGTTGATGATGTCCCTGTTACTTCAAGAGAATCAAAACTACGAGTATCGACAGATCCTAAGCGAGTTGCTTTGCTGCTGTCTACATTGTTAAATCCCACCGACGATCAGTTAAACAAGAAGTTGCAACTATTTGAAGCAGCCGAAAAGGCCATAGCCAATCCAGGCCTCGATAAAGTCTGGGATACAAAGCCATTACTGGATGGAAAGGAGATCATAAAACATTTGAGGCTTAAATATGGAGGACCAATTGTCAGTAAATGGAAGGGGGAACTAGTTGCATGGCAGCTTGCTTATCCTTCTGGGACTACAGAGGAATGCATCGAGTGGATGAAGGAAACACATTCTTCAAGTACTAGCAGATCTGCTAGAGACATTGAGGAATTTAATTGCATCAACAAGAAGACGAGCAAAACTCTAGATTGGAATTTAATTTCAGCAAGAAGAAGAAAAGCAAAAGTCTAG

Protein Analysis

189

Amino Acids

21.28

Weight (kDa)

8.37

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis pycom05g03810 pycom10g03770
rosa_chinensis RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 19
AccI GTMKAC 1 cut(s) 185
AclWI GGATC 2 cut(s) 72, 152
AcsI RAATTY 2 cut(s) 485, 529
AfaI GTAC 2 cut(s) 72, 457
AfiI CCNNNNNNNGG 1 cut(s) 19
AgsI TTSAA 4 cut(s) 53, 129, 239, 453
AhdI GACNNNNNGTC 1 cut(s) 353
AhlI ACTAGT 1 cut(s) 376
AjnI CCWGG 1 cut(s) 265
AluBI AGCT 1 cut(s) 391
AluI AGCT 1 cut(s) 391
Alw26I GTCTC 1 cut(s) 468
AlwI GGATC 2 cut(s) 72, 152
AoxI GGCC 2 cut(s) 252, 268
ApeKI GCWGC 3 cut(s) 178, 242, 388
ApoI RAATTY 2 cut(s) 485, 529
AspS9I GGNCC 1 cut(s) 347
AvaII GGWCC 1 cut(s) 347
BbsI GAAGAC 1 cut(s) 512
BbvI GCAGC 3 cut(s) 165, 254, 400
BccI CCATC 1 cut(s) 299
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 1 cut(s) 267
BciVI GTATCC 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 468
BcuI ACTAGT 1 cut(s) 376
BfaI CTAG 5 cut(s) 377, 459, 471, 521, 565
BfmI CTRYAG 1 cut(s) 411
BfuI GTATCC 1 cut(s) 280
BglI GCCNNNNNGGC 1 cut(s) 251
BglII AGATCT 1 cut(s) 464
BisI GCNGC 3 cut(s) 179, 243, 389
BlsI GCNGC 3 cut(s) 180, 244, 390
BmcAI AGTACT 1 cut(s) 457
Bme1390I CCNGG 1 cut(s) 267
Bme18I GGWCC 1 cut(s) 347
BmeRI GACNNNNNGTC 1 cut(s) 353
BmgT120I GGNCC 1 cut(s) 347
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 2 cut(s) 432, 504
BpiI GAAGAC 1 cut(s) 512
BplI GAGNNNNNCTC 2 cut(s) 502, 534
Bpu10I CCTNAGC 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 306
BseBI CCWGG 1 cut(s) 267
BseGI GGATG 2 cut(s) 310, 438
BseLI CCNNNNNNNGG 1 cut(s) 19
BseNI ACTGG 1 cut(s) 306
BseXI GCAGC 3 cut(s) 165, 254, 400
BshFI GGCC 2 cut(s) 254, 270
BslFI GGGAC 2 cut(s) 101, 421
BslI CCNNNNNNNGG 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 468
BsmFI GGGAC 2 cut(s) 101, 421
BsmI GAATGC 1 cut(s) 425
BsnI GGCC 2 cut(s) 254, 270
Bsp1407I TGTACA 1 cut(s) 70
Bsp143I GATC 5 cut(s) 64, 157, 208, 315, 464
BspANI GGCC 2 cut(s) 254, 270
BspPI GGATC 2 cut(s) 72, 152
BsrGI TGTACA 1 cut(s) 70
BsrI ACTGG 1 cut(s) 306
BssMI GATC 5 cut(s) 64, 157, 208, 315, 464
Bst2UI CCWGG 1 cut(s) 267
BstAUI TGTACA 1 cut(s) 70
BstC8I GCNNGC 2 cut(s) 46, 393
BstDEI CTNAG 1 cut(s) 162
BstF5I GGATG 2 cut(s) 310, 438
BstKTI GATC 5 cut(s) 67, 160, 211, 318, 467
BstMAI GTCTC 1 cut(s) 468
BstMBI GATC 5 cut(s) 64, 157, 208, 315, 464
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 265
BstSFI CTRYAG 1 cut(s) 411
BstV1I GCAGC 3 cut(s) 165, 254, 400
BstV2I GAAGAC 1 cut(s) 512
BstX2I RGATCY 2 cut(s) 157, 464
BstYI RGATCY 2 cut(s) 157, 464
BsuI GTATCC 1 cut(s) 280
BsuRI GGCC 2 cut(s) 254, 270
BtsCI GGATG 2 cut(s) 310, 438
Cac8I GCNNGC 2 cut(s) 46, 393
Cfr13I GGNCC 1 cut(s) 347
Csp6I GTAC 2 cut(s) 71, 456
CviAII CATG 3 cut(s) 14, 68, 384
CviJI RGCY 7 cut(s) 245, 254, 260, 270, 295, 334, 391
CviKI_1 RGCY 7 cut(s) 245, 254, 260, 270, 295, 334, 391
CviQI GTAC 2 cut(s) 71, 456
DdeI CTNAG 1 cut(s) 162
DpnI GATC 5 cut(s) 66, 159, 210, 317, 466
DpnII GATC 5 cut(s) 64, 157, 208, 315, 464
DriI GACNNNNNGTC 1 cut(s) 353
Eam1105I GACNNNNNGTC 1 cut(s) 353
Eco147I AGGCCT 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 265
EcoT22I ATGCAT 1 cut(s) 425
FaeI CATG 3 cut(s) 17, 71, 387
FaiI YATR 6 cut(s) 15, 69, 257, 320, 342, 385
FaqI GGGAC 2 cut(s) 101, 421
FatI CATG 3 cut(s) 13, 67, 383
FblI GTMKAC 1 cut(s) 185
Fnu4HI GCNGC 3 cut(s) 179, 243, 389
FokI GGATG 2 cut(s) 317, 445
Fsp4HI GCNGC 3 cut(s) 179, 243, 389
FspBI CTAG 5 cut(s) 377, 459, 471, 521, 565
GluI GCNGC 3 cut(s) 179, 243, 389
HaeIII GGCC 2 cut(s) 254, 270
Hin1II CATG 3 cut(s) 17, 71, 387
HinfI GANTC 1 cut(s) 134
Hpy166II GTNNAC 2 cut(s) 22, 186
Hpy188III TCNNGA 2 cut(s) 129, 521
Hpy8I GTNNAC 2 cut(s) 22, 186
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 3 cut(s) 361, 411, 430
HpyCH4V TGCA 4 cut(s) 229, 383, 423, 495
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 1 cut(s) 162
Hsp92II CATG 3 cut(s) 17, 71, 387
Kzo9I GATC 5 cut(s) 64, 157, 208, 315, 464
LpnPI CCDG 6 cut(s) 132, 252, 268, 279, 287, 390
Lsp1109I GCAGC 3 cut(s) 165, 254, 400
LweI GCATC 2 cut(s) 432, 504
MaeI CTAG 5 cut(s) 377, 459, 471, 521, 565
MaeIII GTNAC 1 cut(s) 121
MalI GATC 5 cut(s) 66, 159, 210, 317, 466
MboI GATC 5 cut(s) 64, 157, 208, 315, 464
MboII GAAGA 4 cut(s) 441, 517, 558, 561
MfeI CAATTG 1 cut(s) 351
MflI RGATCY 2 cut(s) 157, 464
MluCI AATT 5 cut(s) 351, 485, 490, 529, 534
MnlI CCTC 6 cut(s) 10, 281, 324, 338, 409, 475
Mph1103I ATGCAT 1 cut(s) 425
MseI TTAA 5 cut(s) 194, 215, 336, 489, 533
MspR9I CCNGG 1 cut(s) 267
MunI CAATTG 1 cut(s) 351
Mva1269I GAATGC 1 cut(s) 425
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeII GATC 5 cut(s) 64, 157, 208, 315, 464
NlaIII CATG 3 cut(s) 17, 71, 387
NsiI ATGCAT 1 cut(s) 425
PceI AGGCCT 1 cut(s) 270
PctI GAATGC 1 cut(s) 425
PfeI GAWTC 1 cut(s) 134
PflMI CCANNNNNTGG 1 cut(s) 19
PkrI GCNGC 3 cut(s) 180, 244, 390
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspPI GGNCC 1 cut(s) 347
PsuI RGATCY 2 cut(s) 157, 464
RsaI GTAC 2 cut(s) 72, 457
RsaNI GTAC 2 cut(s) 71, 456
SaqAI TTAA 5 cut(s) 194, 215, 336, 489, 533
SatI GCNGC 3 cut(s) 179, 243, 389
Sau3AI GATC 5 cut(s) 64, 157, 208, 315, 464
Sau96I GGNCC 1 cut(s) 347
ScaI AGTACT 1 cut(s) 457
ScrFI CCNGG 1 cut(s) 267
SetI ASST 2 cut(s) 21, 393
SfaNI GCATC 2 cut(s) 432, 504
SfcI CTRYAG 1 cut(s) 411
SinI GGWCC 1 cut(s) 347
SpeI ACTAGT 1 cut(s) 376
Sse9I AATT 5 cut(s) 351, 485, 490, 529, 534
SseBI AGGCCT 1 cut(s) 270
SspMI CTAG 5 cut(s) 377, 459, 471, 521, 565
StuI AGGCCT 1 cut(s) 270
StyD4I CCNGG 1 cut(s) 265
TaqI TCGA 3 cut(s) 152, 273, 426
TasI AATT 5 cut(s) 351, 485, 490, 529, 534
TatI WGTACW 2 cut(s) 70, 455
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 5 cut(s) 194, 215, 336, 489, 533
Tru9I TTAA 5 cut(s) 194, 215, 336, 489, 533
TseI GCWGC 3 cut(s) 178, 242, 388
TspDTI ATGAA 2 cut(s) 17, 449
Van91I CCANNNNNTGG 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 347
XapI RAATTY 2 cut(s) 485, 529
XbaI TCTAGA 1 cut(s) 520
XmiI GTMKAC 1 cut(s) 185
XspI CTAG 5 cut(s) 377, 459, 471, 521, 565
ZrmI AGTACT 1 cut(s) 457
Zsp2I ATGCAT 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.