Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000288

Physical Location & Seq

Genomic Coordinates Forward (+)

75038647 .. 75039036

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG570300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCTTGCTACACTTGTATTTTCAACAATCCAGGAATTCTCTTGCGAAACAAAGAATGTTGGCGCATTGCCTTGCTGTTGTCCACATTGTTATATCCTAGGGAGGTTGTTGTTCGTTGTGCTGGAGATAATCTAAACAAGGCCTTCAAACTTGAAGAACGAAGAGCTTTATTTAAGGCAGCCGAAAATGCCATAGTTAATCGTGGTACTTATCAACGTCTCTGCTTATGTATGATCTTCCCTCGCCATATTAATGCATTACTACCCTTTATAGAAAAGGTTAAAGATGCTTTGCTGAGACTTGTTCAAGCCCTGGGAAGTAGGAGCTTGGATGTCTTTTCTGATGATTCCTGTTTTGTGGATCAGTCCTTGATAAAGTCTGGGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

129

Amino Acids

14.67

Weight (kDa)

9.1

Isoelectric Point (pI)

54.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca	FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica	MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica	Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis	pycom05g03810 pycom10g03770
rosa_chinensis	RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata	RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora	Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii	Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa	Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha	Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana	Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	369
AcsI	RAATTY	1 cut(s)	36
AfaI	GTAC	1 cut(s)	208
AgsI	TTSAA	4 cut(s)	25, 148, 155, 308
AjnI	CCWGG	2 cut(s)	31, 312
AluBI	AGCT	2 cut(s)	167, 327
AluI	AGCT	2 cut(s)	167, 327
Alw26I	GTCTC	2 cut(s)	224, 292
AlwI	GGATC	1 cut(s)	369
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	179
ApoI	RAATTY	1 cut(s)	36
AseI	ATTAAT	1 cut(s)	252
AspA2I	CCTAGG	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	66
AvrII	CCTAGG	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	191
BciT130I	CCWGG	2 cut(s)	33, 314
BcoDI	GTCTC	2 cut(s)	224, 292
BfaI	CTAG	1 cut(s)	99
BisI	GCNGC	1 cut(s)	180
BlnI	CCTAGG	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	181
Bme1390I	CCNGG	2 cut(s)	33, 314
BmrFI	CCNGG	2 cut(s)	33, 314
BmsI	GCATC	1 cut(s)	277
BpmI	CTGGAG	1 cut(s)	144
BsaJI	CCNNGG	3 cut(s)	98, 312, 313
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	2 cut(s)	33, 314
BseDI	CCNNGG	3 cut(s)	98, 312, 313
BseGI	GGATG	1 cut(s)	337
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	191
BshFI	GGCC	1 cut(s)	143
BsmAI	GTCTC	2 cut(s)	224, 292
BsmBI	CGTCTC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	234, 361
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	288
BspPI	GGATC	1 cut(s)	369
BspQI	GCTCTTC	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	66
BssECI	CCNNGG	3 cut(s)	98, 312, 313
BssMI	GATC	2 cut(s)	234, 361
BssT1I	CCWWGG	1 cut(s)	98
Bst2UI	CCWGG	2 cut(s)	33, 314
Bst6I	CTCTTC	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	2 cut(s)	237, 364
BstMAI	GTCTC	2 cut(s)	224, 292
BstMBI	GATC	2 cut(s)	234, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNI	CCWGG	2 cut(s)	33, 314
BstSCI	CCNGG	2 cut(s)	31, 312
BstV1I	GCAGC	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	337
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	207
CviJI	RGCY	6 cut(s)	5, 143, 167, 182, 311, 327
CviKI_1	RGCY	6 cut(s)	5, 143, 167, 182, 311, 327
CviQI	GTAC	1 cut(s)	207
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	2 cut(s)	236, 363
DpnII	GATC	2 cut(s)	234, 361
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	98
Eco147I	AGGCCT	1 cut(s)	143
EcoRI	GAATTC	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	31, 312
EcoT14I	CCWWGG	1 cut(s)	98
EcoT22I	ATGCAT	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	98
Esp3I	CGTCTC	1 cut(s)	224
FaiI	YATR	7 cut(s)	94, 194, 229, 233, 249, 272, 388
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	1 cut(s)	99
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	143
HhaI	GCGC	1 cut(s)	66
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HinfI	GANTC	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	84
Hpy188I	TCNGA	1 cut(s)	343
Hpy8I	GTNNAC	1 cut(s)	84
HpyAV	CCTTC	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	1 cut(s)	296
HpySE526I	ACGT	1 cut(s)	217
HspAI	GCGC	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	234, 361
LguI	GCTCTTC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	324
LpnPI	CCDG	7 cut(s)	18, 45, 108, 299, 326, 364, 366
Lsp1109I	GCAGC	1 cut(s)	191
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	99
MaeII	ACGT	1 cut(s)	217
MalI	GATC	2 cut(s)	236, 363
MboI	GATC	2 cut(s)	234, 361
MboII	GAAGA	3 cut(s)	167, 174, 229
MluCI	AATT	1 cut(s)	36
MnlI	CCTC	2 cut(s)	97, 252
Mph1103I	ATGCAT	1 cut(s)	259
MseI	TTAA	4 cut(s)	174, 198, 252, 282
MslI	CAYNNNNRTG	1 cut(s)	252
MspR9I	CCNGG	2 cut(s)	33, 314
MvaI	CCWGG	2 cut(s)	33, 314
MwoI	GCNNNNNNNGC	1 cut(s)	188
NdeII	GATC	2 cut(s)	234, 361
NsiI	ATGCAT	1 cut(s)	259
PasI	CCCWGGG	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	143
PciSI	GCTCTTC	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	347
PfoI	TCCNGGA	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	181
PshBI	ATTAAT	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	31, 312
PspGI	CCWGG	2 cut(s)	31, 312
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
RseI	CAYNNNNRTG	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	157
SaqAI	TTAA	4 cut(s)	174, 198, 252, 282
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	2 cut(s)	234, 361
ScrFI	CCNGG	2 cut(s)	33, 314
SetI	ASST	5 cut(s)	108, 169, 220, 282, 329
SfaNI	GCATC	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	252
Sse9I	AATT	1 cut(s)	36
SseBI	AGGCCT	1 cut(s)	143
SspMI	CTAG	1 cut(s)	99
StuI	AGGCCT	1 cut(s)	143
StyD4I	CCNGG	2 cut(s)	31, 312
StyI	CCWWGG	1 cut(s)	98
TaiI	ACGT	1 cut(s)	220
TasI	AATT	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	4 cut(s)	174, 198, 252, 282
Tru9I	TTAA	4 cut(s)	174, 198, 252, 282
TseI	GCWGC	1 cut(s)	179
VspI	ATTAAT	1 cut(s)	252
XapI	RAATTY	1 cut(s)	36
XmaJI	CCTAGG	1 cut(s)	98
XspI	CTAG	1 cut(s)	99
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.