Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000711.1

Orthogroup ID

OG0000288

Physical Location & Seq

Genomic Coordinates Forward (+)

128764 .. 132768

Gene Structure 4005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000711.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atggcgttctctagtgtcttttgtgtgtataagctccaaaagtatggcacaccagaacaggatgcactgagaagggatctaactattaacagcttattttacaatatcaataccaaatccattgaagattggactaatagaggagttgaagatctaaaatgtgggaaaattgctagtcctttaccaccaaaggatacatttatggaggatccgctacgagttcttcgagccatccgttttggtgcaaggttcggattcatactcgatgaacaactaaaggaagctgctgcctgtgatgaagtgaaagctgctctatcagctaaaattagcagagagcgaattggagctgaaattgatctgatgatgtccggaaaccaacctgcccaagctatgacctatatatgtgacttgaagttattttgggttgtcttcagtcttcatccacagtgtgagccatcagaaggatgcgacagagactcccttaaacaaagagtcagcgatgctgaaactgttattaatttacacaatgcattggagaagtttttgtctttgcttcctcactttgtaccaaatggggatgtaaaactcgctgaagttgatttgggaagagaatatgttgatgtgcctcttacatcgaaagaatcaaaactccgagtgttaacagggtttcttttacgagaaattaaagatttttggcaagttgctttgctgatgtctacacttttatatcccaccaccgtcttagacaagaatctcaaaccagaagatcgcagagcattgtttgtagaagctgaaagggccataaataatctaggtctagataaagtctgggatgtaaagccattacttaatggaaaggagatcatggatgctttgcagcttaaatctggaggaccactcgtcagtaaatggcttgctcatcctttggggactgcagaggaatgcctcaagtggctgaaggaaacacactcttcaagtactagatctgccggagatatggaggaattgaatggacccaacaacaagaaaagtaaaactgaagattgtgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

350

Amino Acids

39.42

Weight (kDa)

5.6

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca	FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica	MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica	Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis	pycom05g03810 pycom10g03770
rosa_chinensis	RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata	RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora	Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii	Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa	Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha	Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana	Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	388
AccI	GTMKAC	1 cut(s)	716
AccIII	TCCGGA	1 cut(s)	368
AciI	CCGC	1 cut(s)	212
AclWI	GGATC	3 cut(s)	84, 203, 216
AcuI	CTGAAG	3 cut(s)	415, 612, 977
AdeI	CACNNNGTG	1 cut(s)	449
AfaI	GTAC	2 cut(s)	567, 979
AfiI	CCNNNNNNNGG	1 cut(s)	461
AgsI	TTSAA	5 cut(s)	125, 149, 412, 975, 1009
AhdI	GACNNNNNGTC	1 cut(s)	899
AluBI	AGCT	9 cut(s)	34, 93, 284, 308, 320, 347, 389, 791, 880
AluI	AGCT	9 cut(s)	34, 93, 284, 308, 320, 347, 389, 791, 880
Alw26I	GTCTC	1 cut(s)	468
AlwI	GGATC	3 cut(s)	84, 203, 216
Aor13HI	TCCGGA	1 cut(s)	368
AoxI	GGCC	1 cut(s)	798
ApeKI	GCWGC	4 cut(s)	284, 287, 308, 877
AseI	ATTAAT	1 cut(s)	516
AspS9I	GGNCC	3 cut(s)	798, 893, 1013
AvaII	GGWCC	2 cut(s)	893, 1013
BamHI	GGATCC	1 cut(s)	208
BbsI	GAAGAC	2 cut(s)	421, 428
BbvI	GCAGC	4 cut(s)	271, 274, 295, 889
BccI	CCATC	2 cut(s)	239, 463
BciVI	GTATCC	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	468
BfaI	CTAG	5 cut(s)	12, 174, 812, 818, 981
BfmI	CTRYAG	1 cut(s)	933
BfuAI	ACCTGC	1 cut(s)	388
BfuI	GTATCC	1 cut(s)	187
BglII	AGATCT	2 cut(s)	151, 983
BisI	GCNGC	4 cut(s)	285, 288, 309, 878
BlsI	GCNGC	4 cut(s)	286, 289, 310, 879
BmcAI	AGTACT	1 cut(s)	979
Bme18I	GGWCC	2 cut(s)	893, 1013
BmeRI	GACNNNNNGTC	1 cut(s)	899
BmgT120I	GGNCC	3 cut(s)	798, 893, 1013
BmiI	GGNNCC	2 cut(s)	210, 1015
BmsI	GCATC	4 cut(s)	52, 455, 490, 859
BpiI	GAAGAC	2 cut(s)	421, 428
BplI	GAGNNNNNCTC	2 cut(s)	882, 914
BpmI	CTGGAG	1 cut(s)	909
BpuEI	CTTGAG	1 cut(s)	932
BsaWI	WCCGGW	1 cut(s)	368
BsaXI	ACNNNNNCTCC	2 cut(s)	461, 491
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
BseAI	TCCGGA	1 cut(s)	368
BseGI	GGATG	8 cut(s)	67, 231, 439, 470, 583, 838, 874, 919
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMII	CTCAG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	4 cut(s)	271, 274, 295, 889
BshFI	GGCC	1 cut(s)	800
BsiSI	CCGG	2 cut(s)	369, 990
BslFI	GGGAC	1 cut(s)	943
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	1 cut(s)	468
BsmFI	GGGAC	1 cut(s)	943
BsmI	GAATGC	1 cut(s)	947
BsnI	GGCC	1 cut(s)	800
Bsp13I	TCCGGA	1 cut(s)	368
Bsp143I	GATC	7 cut(s)	76, 151, 208, 355, 766, 861, 983
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	1 cut(s)	800
BspCNI	CTCAG	1 cut(s)	60
BspEI	TCCGGA	1 cut(s)	368
BspLI	GGNNCC	2 cut(s)	210, 1015
BspMAI	CTGCAG	1 cut(s)	937
BspMI	ACCTGC	1 cut(s)	388
BspPI	GGATC	3 cut(s)	84, 203, 216
BssMI	GATC	7 cut(s)	76, 151, 208, 355, 766, 861, 983
Bst4CI	ACNGT	3 cut(s)	447, 511, 739
Bst6I	CTCTTC	2 cut(s)	601, 976
BstC8I	GCNNGC	1 cut(s)	915
BstDEI	CTNAG	2 cut(s)	68, 742
BstF5I	GGATG	8 cut(s)	67, 231, 439, 470, 583, 838, 874, 919
BstKTI	GATC	7 cut(s)	79, 154, 211, 358, 769, 864, 986
BstMAI	GTCTC	1 cut(s)	468
BstMBI	GATC	7 cut(s)	76, 151, 208, 355, 766, 861, 983
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 797
BstSFI	CTRYAG	1 cut(s)	933
BstV1I	GCAGC	4 cut(s)	271, 274, 295, 889
BstV2I	GAAGAC	2 cut(s)	421, 428
BstX2I	RGATCY	4 cut(s)	76, 151, 208, 983
BstXI	CCANNNNNNTGG	1 cut(s)	44
BstYI	RGATCY	4 cut(s)	76, 151, 208, 983
BsuI	GTATCC	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	800
BtgZI	GCGATG	1 cut(s)	513
BtsCI	GGATG	8 cut(s)	67, 231, 439, 470, 583, 838, 874, 919
BtsIMutI	CAGTG	2 cut(s)	65, 452
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	1 cut(s)	915
Cfr13I	GGNCC	3 cut(s)	798, 893, 1013
Csp6I	GTAC	2 cut(s)	566, 978
CviAII	CATG	1 cut(s)	865
CviQI	GTAC	2 cut(s)	566, 978
DdeI	CTNAG	2 cut(s)	68, 742
DpnI	GATC	7 cut(s)	78, 153, 210, 357, 768, 863, 985
DpnII	GATC	7 cut(s)	76, 151, 208, 355, 766, 861, 983
DraIII	CACNNNGTG	1 cut(s)	449
DriI	GACNNNNNGTC	1 cut(s)	899
Eam1104I	CTCTTC	2 cut(s)	601, 976
Eam1105I	GACNNNNNGTC	1 cut(s)	899
EarI	CTCTTC	2 cut(s)	601, 976
Eco47I	GGWCC	2 cut(s)	893, 1013
Eco57I	CTGAAG	3 cut(s)	415, 612, 977
EcoT22I	ATGCAT	1 cut(s)	532
FaeI	CATG	1 cut(s)	868
FaqI	GGGAC	1 cut(s)	943
FatI	CATG	1 cut(s)	864
FblI	GTMKAC	1 cut(s)	716
Fnu4HI	GCNGC	4 cut(s)	285, 288, 309, 878
FokI	GGATG	8 cut(s)	74, 218, 426, 477, 590, 845, 881, 906
Fsp4HI	GCNGC	4 cut(s)	285, 288, 309, 878
FspBI	CTAG	5 cut(s)	12, 174, 812, 818, 981
GluI	GCNGC	4 cut(s)	285, 288, 309, 878
GsuI	CTGGAG	1 cut(s)	909
HaeIII	GGCC	1 cut(s)	800
HapII	CCGG	2 cut(s)	369, 990
Hin1II	CATG	1 cut(s)	868
HincII	GTYRAC	1 cut(s)	660
HindII	GTYRAC	1 cut(s)	660
HinfI	GANTC	5 cut(s)	255, 476, 492, 641, 751
HpaI	GTTAAC	1 cut(s)	660
HpaII	CCGG	2 cut(s)	369, 990
Hpy166II	GTNNAC	2 cut(s)	660, 717
Hpy188I	TCNGA	4 cut(s)	254, 360, 460, 653
Hpy188III	TCNNGA	3 cut(s)	369, 818, 888
Hpy8I	GTNNAC	2 cut(s)	660, 717
HpyAV	CCTTC	3 cut(s)	66, 455, 952
HpyCH4III	ACNGT	3 cut(s)	447, 511, 739
HpyCH4V	TGCA	5 cut(s)	65, 245, 530, 877, 935
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 797
HpyF3I	CTNAG	2 cut(s)	68, 742
Hsp92II	CATG	1 cut(s)	868
Kpn2I	TCCGGA	1 cut(s)	368
KspAI	GTTAAC	1 cut(s)	660
Kzo9I	GATC	7 cut(s)	76, 151, 208, 355, 766, 861, 983
LmnI	GCTCC	2 cut(s)	39, 344
Lsp1109I	GCAGC	4 cut(s)	271, 274, 295, 889
LweI	GCATC	4 cut(s)	52, 455, 490, 859
MaeI	CTAG	5 cut(s)	12, 174, 812, 818, 981
MaeIII	GTNAC	2 cut(s)	404, 1046
MalI	GATC	7 cut(s)	78, 153, 210, 357, 768, 863, 985
MboI	GATC	7 cut(s)	76, 151, 208, 355, 766, 861, 983
MboII	GAAGA	9 cut(s)	137, 161, 215, 421, 428, 618, 776, 963, 1052
MflI	RGATCY	4 cut(s)	76, 151, 208, 983
MluCI	AATT	7 cut(s)	168, 324, 339, 351, 517, 681, 1004
MlyI	GAGTC	2 cut(s)	470, 501
MnlI	CCTC	8 cut(s)	134, 199, 567, 636, 884, 931, 956, 994
Mph1103I	ATGCAT	1 cut(s)	532
MroI	TCCGGA	1 cut(s)	368
MseI	TTAA	7 cut(s)	87, 483, 516, 659, 684, 849, 882
MspI	CCGG	2 cut(s)	369, 990
Mva1269I	GAATGC	1 cut(s)	947
MwoI	GCNNNNNNNGC	2 cut(s)	317, 797
NdeII	GATC	7 cut(s)	76, 151, 208, 355, 766, 861, 983
NlaIII	CATG	1 cut(s)	868
NlaIV	GGNNCC	2 cut(s)	210, 1015
NmuCI	GTSAC	2 cut(s)	404, 1046
NsiI	ATGCAT	1 cut(s)	532
PcsI	WCGNNNNNNNCGW	2 cut(s)	223, 232
PctI	GAATGC	1 cut(s)	947
PfeI	GAWTC	3 cut(s)	255, 641, 751
PkrI	GCNGC	4 cut(s)	286, 289, 310, 879
PleI	GAGTC	2 cut(s)	470, 500
PpsI	GAGTC	2 cut(s)	470, 500
PshBI	ATTAAT	1 cut(s)	516
PspN4I	GGNNCC	2 cut(s)	210, 1015
PspPI	GGNCC	3 cut(s)	798, 893, 1013
PstI	CTGCAG	1 cut(s)	937
PsuI	RGATCY	4 cut(s)	76, 151, 208, 983
RsaI	GTAC	2 cut(s)	567, 979
RsaNI	GTAC	2 cut(s)	566, 978
SaqAI	TTAA	7 cut(s)	87, 483, 516, 659, 684, 849, 882
SatI	GCNGC	4 cut(s)	285, 288, 309, 878
Sau3AI	GATC	7 cut(s)	76, 151, 208, 355, 766, 861, 983
Sau96I	GGNCC	3 cut(s)	798, 893, 1013
ScaI	AGTACT	1 cut(s)	979
SchI	GAGTC	2 cut(s)	470, 501
SfaNI	GCATC	4 cut(s)	52, 455, 490, 859
SfcI	CTRYAG	1 cut(s)	933
SinI	GGWCC	2 cut(s)	893, 1013
SmlI	CTYRAG	1 cut(s)	947
SmoI	CTYRAG	1 cut(s)	947
Sse9I	AATT	7 cut(s)	168, 324, 339, 351, 517, 681, 1004
SsiI	CCGC	1 cut(s)	212
SspMI	CTAG	5 cut(s)	12, 174, 812, 818, 981
TaaI	ACNGT	3 cut(s)	447, 511, 739
TaqI	TCGA	3 cut(s)	226, 264, 635
TasI	AATT	7 cut(s)	168, 324, 339, 351, 517, 681, 1004
TatI	WGTACW	1 cut(s)	977
TfiI	GAWTC	3 cut(s)	255, 641, 751
Tru1I	TTAA	7 cut(s)	87, 483, 516, 659, 684, 849, 882
Tru9I	TTAA	7 cut(s)	87, 483, 516, 659, 684, 849, 882
TscAI	CASTG	2 cut(s)	72, 452
TseFI	GTSAC	2 cut(s)	404, 1046
TseI	GCWGC	4 cut(s)	284, 287, 308, 877
Tsp45I	GTSAC	2 cut(s)	404, 1046
TspDTI	ATGAA	4 cut(s)	247, 282, 312, 428
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	2 cut(s)	72, 452
VpaK11BI	GGWCC	2 cut(s)	893, 1013
VspI	ATTAAT	1 cut(s)	516
XbaI	TCTAGA	1 cut(s)	817
XmiI	GTMKAC	1 cut(s)	716
XspI	CTAG	5 cut(s)	12, 174, 812, 818, 981
ZrmI	AGTACT	1 cut(s)	979
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.