Rh4BG167000

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
30065263 .. 30065993
731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG167000.1

Sequence Viewer

Length: 366 bp
ATGTCTACACTTTTATATCCCACCGACGTCTTAAACAAGAATCTCAAACCAGAAGATTGCAGAGCTTTGTTTGTAGAAGCTGAAAGGTCCATAAATAATCTAGGTCTAGATAAAGTCTGGGATGTAAAGCCATTACTTAATGGAAAGGAGATCATGGATGCTTTGCAGCTTAAATCTGGAGGACCACTTGTCAGTAAATGGCAAAGGAAGCTACCTGCATGGCAGCTTGCTCATCCTTTGGGGACTGCAGAGGAATGCCTCAAGTGGCTGAAGGAAACACACTCTTCAAGTACTAGATCTGCTGGAGATATGGAGGAACTGAATGGACCCAACAACAAGAAAAGTAAAACTGAAGATCGTGACTAA

Protein Analysis

121

Amino Acids

13.63

Weight (kDa)

6.74

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis pycom05g03810 pycom10g03770
rosa_chinensis RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 30
Acc36I ACCTGC 1 cut(s) 223
AccI GTMKAC 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 290
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 1 cut(s) 292
AgsI TTSAA 1 cut(s) 288
AhdI GACNNNNNGTC 1 cut(s) 188
AluBI AGCT 5 cut(s) 65, 80, 169, 211, 226
AluI AGCT 5 cut(s) 65, 80, 169, 211, 226
ApeKI GCWGC 2 cut(s) 166, 223
AspS9I GGNCC 3 cut(s) 87, 182, 326
AvaII GGWCC 3 cut(s) 87, 182, 326
BbvI GCAGC 2 cut(s) 178, 235
BfaI CTAG 3 cut(s) 101, 107, 294
BfmI CTRYAG 1 cut(s) 246
BfuAI ACCTGC 1 cut(s) 223
BglII AGATCT 1 cut(s) 296
BisI GCNGC 2 cut(s) 167, 224
BlsI GCNGC 2 cut(s) 168, 225
BmcAI AGTACT 1 cut(s) 292
Bme18I GGWCC 3 cut(s) 87, 182, 326
BmeRI GACNNNNNGTC 1 cut(s) 188
BmgT120I GGNCC 3 cut(s) 87, 182, 326
BmiI GGNNCC 1 cut(s) 328
BmsI GCATC 1 cut(s) 148
BpmI CTGGAG 2 cut(s) 198, 324
BpuEI CTTGAG 1 cut(s) 245
BsaHI GRCGYC 1 cut(s) 27
BseGI GGATG 3 cut(s) 127, 163, 232
BseXI GCAGC 2 cut(s) 178, 235
BslFI GGGAC 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 256
BsmI GAATGC 1 cut(s) 260
Bsp143I GATC 3 cut(s) 150, 296, 355
BspLI GGNNCC 1 cut(s) 328
BspMAI CTGCAG 1 cut(s) 250
BspMI ACCTGC 1 cut(s) 223
BssMI GATC 3 cut(s) 150, 296, 355
BssNI GRCGYC 1 cut(s) 27
Bst6I CTCTTC 1 cut(s) 289
BstACI GRCGYC 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 228
BstF5I GGATG 3 cut(s) 127, 163, 232
BstKTI GATC 3 cut(s) 153, 299, 358
BstMBI GATC 3 cut(s) 150, 296, 355
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 178, 235
BstX2I RGATCY 1 cut(s) 296
BstYI RGATCY 1 cut(s) 296
BtsCI GGATG 3 cut(s) 127, 163, 232
BveI ACCTGC 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 228
Cfr13I GGNCC 3 cut(s) 87, 182, 326
Csp6I GTAC 1 cut(s) 291
CviAII CATG 2 cut(s) 154, 219
CviJI RGCY 7 cut(s) 65, 80, 130, 169, 211, 226, 268
CviKI_1 RGCY 7 cut(s) 65, 80, 130, 169, 211, 226, 268
CviQI GTAC 1 cut(s) 291
DpnI GATC 3 cut(s) 152, 298, 357
DpnII GATC 3 cut(s) 150, 296, 355
DriI GACNNNNNGTC 1 cut(s) 188
Eam1104I CTCTTC 1 cut(s) 289
Eam1105I GACNNNNNGTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 289
Eco47I GGWCC 3 cut(s) 87, 182, 326
Eco57I CTGAAG 1 cut(s) 290
FaeI CATG 2 cut(s) 157, 222
FaiI YATR 5 cut(s) 16, 92, 155, 220, 311
FaqI GGGAC 1 cut(s) 256
FatI CATG 2 cut(s) 153, 218
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 167, 224
FokI GGATG 3 cut(s) 134, 170, 219
Fsp4HI GCNGC 2 cut(s) 167, 224
FspBI CTAG 3 cut(s) 101, 107, 294
GluI GCNGC 2 cut(s) 167, 224
GsuI CTGGAG 2 cut(s) 198, 324
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 2 cut(s) 157, 222
HinfI GANTC 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 6
Hpy188III TCNNGA 3 cut(s) 107, 177, 359
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 265
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 4 cut(s) 60, 166, 218, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpySE526I ACGT 1 cut(s) 27
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 2 cut(s) 157, 222
Kzo9I GATC 3 cut(s) 150, 296, 355
LpnPI CCDG 5 cut(s) 63, 103, 162, 228, 288
Lsp1109I GCAGC 2 cut(s) 178, 235
LweI GCATC 1 cut(s) 148
MaeI CTAG 3 cut(s) 101, 107, 294
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 359
MalI GATC 3 cut(s) 152, 298, 357
MboI GATC 3 cut(s) 150, 296, 355
MboII GAAGA 3 cut(s) 65, 276, 365
MflI RGATCY 1 cut(s) 296
MnlI CCTC 4 cut(s) 173, 244, 269, 307
MseI TTAA 3 cut(s) 32, 138, 171
Mva1269I GAATGC 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 208
NdeII GATC 3 cut(s) 150, 296, 355
NlaIII CATG 2 cut(s) 157, 222
NlaIV GGNNCC 1 cut(s) 328
NmuCI GTSAC 1 cut(s) 359
PctI GAATGC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 40
PkrI GCNGC 2 cut(s) 168, 225
PspN4I GGNNCC 1 cut(s) 328
PspPI GGNCC 3 cut(s) 87, 182, 326
PstI CTGCAG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 296
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
SaqAI TTAA 3 cut(s) 32, 138, 171
SatI GCNGC 2 cut(s) 167, 224
Sau3AI GATC 3 cut(s) 150, 296, 355
Sau96I GGNCC 3 cut(s) 87, 182, 326
ScaI AGTACT 1 cut(s) 292
SetI ASST 9 cut(s) 30, 67, 82, 89, 106, 171, 213, 217, 228
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 3 cut(s) 87, 182, 326
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
SspMI CTAG 3 cut(s) 101, 107, 294
TaiI ACGT 1 cut(s) 30
TatI WGTACW 1 cut(s) 290
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 3 cut(s) 32, 138, 171
Tru9I TTAA 3 cut(s) 32, 138, 171
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 2 cut(s) 166, 223
Tsp45I GTSAC 1 cut(s) 359
VpaK11BI GGWCC 3 cut(s) 87, 182, 326
XbaI TCTAGA 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 3 cut(s) 101, 107, 294
ZraI GACGTC 1 cut(s) 28
ZrmI AGTACT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.