Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PolyA_pol | PF01743 | 42 - 147 | 2.5e-18 | Poly A polymerase head domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 119 |
| Acc36I | ACCTGC | 1 cut(s) | 119 |
| AccI | GTMKAC | 1 cut(s) | 11 |
| AciI | CCGC | 2 cut(s) | 292, 482 |
| AclWI | GGATC | 3 cut(s) | 354, 473, 486 |
| AcsI | RAATTY | 2 cut(s) | 209, 676 |
| AcuI | CTGAAG | 2 cut(s) | 78, 639 |
| AdeI | CACNNNGTG | 1 cut(s) | 707 |
| AfaI | GTAC | 5 cut(s) | 24, 746, 757, 1014, 1300 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 719 |
| AflII | CTTAAG | 2 cut(s) | 107, 1268 |
| AflIII | ACRYGT | 2 cut(s) | 25, 1109 |
| AgsI | TTSAA | 6 cut(s) | 260, 395, 419, 773, 796, 1296 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1196 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 66, 98 |
| Alw26I | GTCTC | 1 cut(s) | 222 |
| AlwI | GGATC | 3 cut(s) | 354, 473, 486 |
| ApeKI | GCWGC | 8 cut(s) | 79, 204, 554, 557, 578, 827, 1174, 1231 |
| ApoI | RAATTY | 2 cut(s) | 209, 676 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 924, 956 |
| AseI | ATTAAT | 1 cut(s) | 963 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 68, 255 |
| AspS9I | GGNCC | 3 cut(s) | 139, 1190, 1334 |
| AsuHPI | GGTGA | 2 cut(s) | 16, 235 |
| AsuII | TTCGAA | 1 cut(s) | 72 |
| AvaII | GGWCC | 3 cut(s) | 139, 1190, 1334 |
| BaeGI | GKGCMC | 1 cut(s) | 786 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 456, 489 |
| BamHI | GGATCC | 1 cut(s) | 478 |
| BbsI | GAAGAC | 2 cut(s) | 686, 857 |
| BbvI | GCAGC | 8 cut(s) | 66, 216, 541, 544, 565, 814, 1186, 1243 |
| BccI | CCATC | 3 cut(s) | 129, 193, 721 |
| BciVI | GTATCC | 1 cut(s) | 457 |
| BcoDI | GTCTC | 1 cut(s) | 222 |
| BfaI | CTAG | 3 cut(s) | 635, 1115, 1302 |
| BfmI | CTRYAG | 3 cut(s) | 662, 1185, 1254 |
| BfrI | CTTAAG | 2 cut(s) | 107, 1268 |
| BfuAI | ACCTGC | 1 cut(s) | 119 |
| BfuI | GTATCC | 1 cut(s) | 457 |
| BglII | AGATCT | 3 cut(s) | 66, 421, 1304 |
| BisI | GCNGC | 9 cut(s) | 80, 205, 292, 555, 558, 579, 828, 1175, 1232 |
| BlsI | GCNGC | 9 cut(s) | 81, 206, 293, 556, 559, 580, 829, 1176, 1233 |
| BmcAI | AGTACT | 1 cut(s) | 1300 |
| Bme18I | GGWCC | 3 cut(s) | 139, 1190, 1334 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1196 |
| BmgT120I | GGNCC | 3 cut(s) | 139, 1190, 1334 |
| BmiI | GGNNCC | 3 cut(s) | 140, 480, 1336 |
| BmrI | ACTGGG | 1 cut(s) | 681 |
| BmsI | GCATC | 4 cut(s) | 322, 713, 937, 1156 |
| BmuI | ACTGGG | 1 cut(s) | 681 |
| BpiI | GAAGAC | 2 cut(s) | 686, 857 |
| BpmI | CTGGAG | 1 cut(s) | 1332 |
| Bpu14I | TTCGAA | 1 cut(s) | 72 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 606, 636 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 719 |
| Bse1I | ACTGG | 1 cut(s) | 676 |
| Bse3DI | GCAATG | 2 cut(s) | 180, 837 |
| BseGI | GGATG | 8 cut(s) | 140, 337, 697, 728, 1030, 1135, 1171, 1240 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 719 |
| BseMI | GCAATG | 2 cut(s) | 180, 837 |
| BseMII | CTCAG | 2 cut(s) | 105, 329 |
| BseNI | ACTGG | 1 cut(s) | 676 |
| BseRI | GAGGAG | 1 cut(s) | 426 |
| BseSI | GKGCMC | 1 cut(s) | 786 |
| BseXI | GCAGC | 8 cut(s) | 66, 216, 541, 544, 565, 814, 1186, 1243 |
| BslFI | GGGAC | 3 cut(s) | 898, 1055, 1264 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 719 |
| BsmAI | GTCTC | 1 cut(s) | 222 |
| BsmFI | GGGAC | 3 cut(s) | 898, 1055, 1264 |
| BsmI | GAATGC | 4 cut(s) | 170, 294, 638, 1268 |
| Bsp119I | TTCGAA | 1 cut(s) | 72 |
| Bsp1286I | GDGCHC | 1 cut(s) | 786 |
| Bsp143I | GATC | 6 cut(s) | 66, 346, 421, 478, 1158, 1304 |
| BspACI | CCGC | 2 cut(s) | 292, 482 |
| BspCNI | CTCAG | 2 cut(s) | 106, 330 |
| BspLI | GGNNCC | 3 cut(s) | 140, 480, 1336 |
| BspMAI | CTGCAG | 2 cut(s) | 666, 1258 |
| BspMI | ACCTGC | 1 cut(s) | 119 |
| BspPI | GGATC | 3 cut(s) | 354, 473, 486 |
| BspT104I | TTCGAA | 1 cut(s) | 72 |
| BspTI | CTTAAG | 2 cut(s) | 107, 1268 |
| BsrDI | GCAATG | 2 cut(s) | 180, 837 |
| BsrI | ACTGG | 1 cut(s) | 676 |
| BssMI | GATC | 6 cut(s) | 66, 346, 421, 478, 1158, 1304 |
| Bst4CI | ACNGT | 3 cut(s) | 22, 705, 958 |
| Bst6I | CTCTTC | 4 cut(s) | 54, 246, 1048, 1297 |
| BstAFI | CTTAAG | 2 cut(s) | 107, 1268 |
| BstBI | TTCGAA | 1 cut(s) | 72 |
| BstC8I | GCNNGC | 1 cut(s) | 1236 |
| BstDEI | CTNAG | 2 cut(s) | 114, 338 |
| BstF5I | GGATG | 8 cut(s) | 140, 337, 697, 728, 1030, 1135, 1171, 1240 |
| BstKTI | GATC | 6 cut(s) | 69, 349, 424, 481, 1161, 1307 |
| BstMAI | GTCTC | 1 cut(s) | 222 |
| BstMBI | GATC | 6 cut(s) | 66, 346, 421, 478, 1158, 1304 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 88, 1216 |
| BstNSI | RCATGY | 2 cut(s) | 29, 1113 |
| BstSFI | CTRYAG | 3 cut(s) | 662, 1185, 1254 |
| BstSLI | GKGCMC | 1 cut(s) | 786 |
| BstV1I | GCAGC | 8 cut(s) | 66, 216, 541, 544, 565, 814, 1186, 1243 |
| BstV2I | GAAGAC | 2 cut(s) | 686, 857 |
| BstX2I | RGATCY | 5 cut(s) | 66, 346, 421, 478, 1304 |
| BstYI | RGATCY | 5 cut(s) | 66, 346, 421, 478, 1304 |
| BsuI | GTATCC | 1 cut(s) | 457 |
| BtgZI | GCGATG | 1 cut(s) | 960 |
| BtsCI | GGATG | 8 cut(s) | 140, 337, 697, 728, 1030, 1135, 1171, 1240 |
| BtsIMutI | CAGTG | 3 cut(s) | 335, 647, 710 |
| BveI | ACCTGC | 1 cut(s) | 119 |
| Cac8I | GCNNGC | 1 cut(s) | 1236 |
| Cfr13I | GGNCC | 3 cut(s) | 139, 1190, 1334 |
| Csp6I | GTAC | 5 cut(s) | 23, 745, 756, 1013, 1299 |
| CviAII | CATG | 6 cut(s) | 26, 143, 856, 1110, 1162, 1227 |
| CviQI | GTAC | 5 cut(s) | 23, 745, 756, 1013, 1299 |
| DdeI | CTNAG | 2 cut(s) | 114, 338 |
| DpnI | GATC | 6 cut(s) | 68, 348, 423, 480, 1160, 1306 |
| DpnII | GATC | 6 cut(s) | 66, 346, 421, 478, 1158, 1304 |
| DraIII | CACNNNGTG | 1 cut(s) | 707 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1196 |
| Eam1104I | CTCTTC | 4 cut(s) | 54, 246, 1048, 1297 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1196 |
| EarI | CTCTTC | 4 cut(s) | 54, 246, 1048, 1297 |
| Eco47I | GGWCC | 3 cut(s) | 139, 1190, 1334 |
| Eco57I | CTGAAG | 2 cut(s) | 78, 639 |
| EcoT22I | ATGCAT | 1 cut(s) | 979 |
| FaeI | CATG | 6 cut(s) | 29, 146, 859, 1113, 1165, 1230 |
| FaqI | GGGAC | 3 cut(s) | 898, 1055, 1264 |
| FatI | CATG | 6 cut(s) | 25, 142, 855, 1109, 1161, 1226 |
| FblI | GTMKAC | 1 cut(s) | 11 |
| Fnu4HI | GCNGC | 9 cut(s) | 80, 205, 292, 555, 558, 579, 828, 1175, 1232 |
| FokI | GGATG | 8 cut(s) | 147, 344, 684, 735, 1037, 1142, 1178, 1227 |
| Fsp4HI | GCNGC | 9 cut(s) | 80, 205, 292, 555, 558, 579, 828, 1175, 1232 |
| FspBI | CTAG | 3 cut(s) | 635, 1115, 1302 |
| GluI | GCNGC | 9 cut(s) | 80, 205, 292, 555, 558, 579, 828, 1175, 1232 |
| GsuI | CTGGAG | 1 cut(s) | 1332 |
| Hin1II | CATG | 6 cut(s) | 29, 146, 859, 1113, 1165, 1230 |
| HincII | GTYRAC | 1 cut(s) | 1107 |
| HindII | GTYRAC | 1 cut(s) | 1107 |
| HindIII | AAGCTT | 2 cut(s) | 149, 682 |
| HinfI | GANTC | 6 cut(s) | 264, 519, 525, 691, 763, 1088 |
| HpaI | GTTAAC | 1 cut(s) | 1107 |
| HphI | GGTGA | 2 cut(s) | 16, 235 |
| Hpy166II | GTNNAC | 3 cut(s) | 12, 669, 1107 |
| Hpy188I | TCNGA | 5 cut(s) | 524, 589, 718, 908, 1100 |
| Hpy188III | TCNNGA | 3 cut(s) | 688, 892, 1115 |
| Hpy8I | GTNNAC | 3 cut(s) | 12, 669, 1107 |
| HpyAV | CCTTC | 6 cut(s) | 214, 336, 713, 802, 804, 848 |
| HpyCH4III | ACNGT | 3 cut(s) | 22, 705, 958 |
| HpyCH4V | TGCA | 9 cut(s) | 168, 307, 335, 664, 830, 977, 1174, 1226, 1256 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 88, 1216 |
| HpyF3I | CTNAG | 2 cut(s) | 114, 338 |
| Hsp92II | CATG | 6 cut(s) | 29, 146, 859, 1113, 1165, 1230 |
| KspAI | GTTAAC | 1 cut(s) | 1107 |
| Kzo9I | GATC | 6 cut(s) | 66, 346, 421, 478, 1158, 1304 |
| LmnI | GCTCC | 1 cut(s) | 614 |
| Lsp1109I | GCAGC | 8 cut(s) | 66, 216, 541, 544, 565, 814, 1186, 1243 |
| LweI | GCATC | 4 cut(s) | 322, 713, 937, 1156 |
| MaeI | CTAG | 3 cut(s) | 635, 1115, 1302 |
| MaeIII | GTNAC | 1 cut(s) | 1367 |
| MalI | GATC | 6 cut(s) | 68, 348, 423, 480, 1160, 1306 |
| MboI | GATC | 6 cut(s) | 66, 346, 421, 478, 1158, 1304 |
| MfeI | CAATTG | 2 cut(s) | 733, 773 |
| MflI | RGATCY | 5 cut(s) | 66, 346, 421, 478, 1304 |
| MhlI | GDGCHC | 1 cut(s) | 786 |
| MluCI | AATT | 9 cut(s) | 209, 438, 594, 609, 676, 733, 773, 895, 964 |
| MlyI | GAGTC | 1 cut(s) | 700 |
| MnlI | CCTC | 7 cut(s) | 247, 404, 469, 1014, 1083, 1252, 1315 |
| Mph1103I | ATGCAT | 1 cut(s) | 979 |
| MroXI | GAANNNNTTC | 2 cut(s) | 68, 255 |
| MseI | TTAA | 9 cut(s) | 108, 357, 680, 918, 963, 1106, 1146, 1179, 1269 |
| MspCI | CTTAAG | 2 cut(s) | 107, 1268 |
| MunI | CAATTG | 2 cut(s) | 733, 773 |
| Mva1269I | GAATGC | 4 cut(s) | 170, 294, 638, 1268 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 88, 1216 |
| NdeII | GATC | 6 cut(s) | 66, 346, 421, 478, 1158, 1304 |
| NlaIII | CATG | 6 cut(s) | 29, 146, 859, 1113, 1165, 1230 |
| NlaIV | GGNNCC | 3 cut(s) | 140, 480, 1336 |
| NmuCI | GTSAC | 1 cut(s) | 1367 |
| NsiI | ATGCAT | 1 cut(s) | 979 |
| NspI | RCATGY | 2 cut(s) | 29, 1113 |
| NspV | TTCGAA | 1 cut(s) | 72 |
| PaqCI | CACCTGC | 1 cut(s) | 119 |
| PciI | ACATGT | 2 cut(s) | 25, 1109 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 493, 502 |
| PctI | GAATGC | 4 cut(s) | 170, 294, 638, 1268 |
| PdmI | GAANNNNTTC | 2 cut(s) | 68, 255 |
| PfeI | GAWTC | 5 cut(s) | 264, 519, 525, 763, 1088 |
| PkrI | GCNGC | 9 cut(s) | 81, 206, 293, 556, 559, 580, 829, 1176, 1233 |
| PleI | GAGTC | 1 cut(s) | 699 |
| PpsI | GAGTC | 1 cut(s) | 699 |
| PscI | ACATGT | 2 cut(s) | 25, 1109 |
| PshBI | ATTAAT | 1 cut(s) | 963 |
| PspN4I | GGNNCC | 3 cut(s) | 140, 480, 1336 |
| PspPI | GGNCC | 3 cut(s) | 139, 1190, 1334 |
| PstI | CTGCAG | 2 cut(s) | 666, 1258 |
| PsuI | RGATCY | 5 cut(s) | 66, 346, 421, 478, 1304 |
| RsaI | GTAC | 5 cut(s) | 24, 746, 757, 1014, 1300 |
| RsaNI | GTAC | 5 cut(s) | 23, 745, 756, 1013, 1299 |
| SaqAI | TTAA | 9 cut(s) | 108, 357, 680, 918, 963, 1106, 1146, 1179, 1269 |
| SatI | GCNGC | 9 cut(s) | 80, 205, 292, 555, 558, 579, 828, 1175, 1232 |
| Sau3AI | GATC | 6 cut(s) | 66, 346, 421, 478, 1158, 1304 |
| Sau96I | GGNCC | 3 cut(s) | 139, 1190, 1334 |
| ScaI | AGTACT | 1 cut(s) | 1300 |
| SchI | GAGTC | 1 cut(s) | 700 |
| SduI | GDGCHC | 1 cut(s) | 786 |
| SfaNI | GCATC | 4 cut(s) | 322, 713, 937, 1156 |
| SfcI | CTRYAG | 3 cut(s) | 662, 1185, 1254 |
| SfuI | TTCGAA | 1 cut(s) | 72 |
| SinI | GGWCC | 3 cut(s) | 139, 1190, 1334 |
| SmlI | CTYRAG | 2 cut(s) | 107, 1268 |
| SmoI | CTYRAG | 2 cut(s) | 107, 1268 |
| Sse9I | AATT | 9 cut(s) | 209, 438, 594, 609, 676, 733, 773, 895, 964 |
| SsiI | CCGC | 2 cut(s) | 292, 482 |
| SspMI | CTAG | 3 cut(s) | 635, 1115, 1302 |
| TaaI | ACNGT | 3 cut(s) | 22, 705, 958 |
| TaqI | TCGA | 3 cut(s) | 72, 496, 1082 |
| TasI | AATT | 9 cut(s) | 209, 438, 594, 609, 676, 733, 773, 895, 964 |
| TatI | WGTACW | 2 cut(s) | 755, 1298 |
| TauI | GCSGC | 1 cut(s) | 294 |
| TfiI | GAWTC | 5 cut(s) | 264, 519, 525, 763, 1088 |
| Tru1I | TTAA | 9 cut(s) | 108, 357, 680, 918, 963, 1106, 1146, 1179, 1269 |
| Tru9I | TTAA | 9 cut(s) | 108, 357, 680, 918, 963, 1106, 1146, 1179, 1269 |
| TscAI | CASTG | 3 cut(s) | 342, 654, 710 |
| TseFI | GTSAC | 1 cut(s) | 1367 |
| TseI | GCWGC | 8 cut(s) | 79, 204, 554, 557, 578, 827, 1174, 1231 |
| Tsp45I | GTSAC | 1 cut(s) | 1367 |
| TspDTI | ATGAA | 6 cut(s) | 66, 517, 552, 582, 686, 1296 |
| TspGWI | ACGGA | 1 cut(s) | 494 |
| TspRI | CASTG | 3 cut(s) | 342, 654, 710 |
| Vha464I | CTTAAG | 2 cut(s) | 107, 1268 |
| VpaK11BI | GGWCC | 3 cut(s) | 139, 1190, 1334 |
| VspI | ATTAAT | 1 cut(s) | 963 |
| XapI | RAATTY | 2 cut(s) | 209, 676 |
| XbaI | TCTAGA | 1 cut(s) | 1114 |
| XceI | RCATGY | 2 cut(s) | 29, 1113 |
| XmiI | GTMKAC | 1 cut(s) | 11 |
| XmnI | GAANNNNTTC | 2 cut(s) | 68, 255 |
| XspI | CTAG | 3 cut(s) | 635, 1115, 1302 |
| ZrmI | AGTACT | 1 cut(s) | 1300 |
| Zsp2I | ATGCAT | 1 cut(s) | 979 |