Rw0G007750

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00281
Physical Location & Seq
Forward (+)
27014 .. 27476
463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G007750.1

Sequence Viewer

Length: 378 bp
ATGTCTTTAGCTTTTAAATGCTCTCTGTGTTCACCTCTTTCTTACTCTCTGTGTACATGGATGGGTGAGTGTGGCTGTCCAGCCTATCCTGATTTCTGTCTTGGTGGAGCAGGTCTAGATGAAGTCTGGGATGTAAAGCCATTACTTAATGGAAAGGAGATCATGGGTGCTTTGCAGCTTAAATCTGGAGGACCACTTGTCAGTAAATGGCAAAGGAAGCTACTTGCATGGCAGCTTGCTCATCATCCCTTGGGGACTGCAGAGGAATGCCTCAAGTGGCTGAAGGAAACACACTCTTCAAGTACTAGATCTGCTGGAGATATGGAGGAACTGAATGGACCCAACAACAAGAAAAGTGAAACTGAAGATCGTGACTAA

Protein Analysis

125

Amino Acids

13.73

Weight (kDa)

5.6

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis pycom05g03810 pycom10g03770
rosa_chinensis RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 101
AcuI CTGAAG 1 cut(s) 302
AfaI GTAC 2 cut(s) 55, 304
AgsI TTSAA 1 cut(s) 300
AhdI GACNNNNNGTC 1 cut(s) 197
AluBI AGCT 4 cut(s) 11, 178, 220, 235
AluI AGCT 4 cut(s) 11, 178, 220, 235
ApeKI GCWGC 2 cut(s) 175, 232
AspS9I GGNCC 2 cut(s) 191, 338
AsuHPI GGTGA 2 cut(s) 24, 77
AvaII GGWCC 2 cut(s) 191, 338
BbvI GCAGC 2 cut(s) 187, 244
BccI CCATC 1 cut(s) 55
BfaI CTAG 2 cut(s) 116, 306
BfmI CTRYAG 1 cut(s) 258
BfuAI ACCTGC 1 cut(s) 101
BglII AGATCT 1 cut(s) 308
BisI GCNGC 2 cut(s) 176, 233
BlsI GCNGC 2 cut(s) 177, 234
BmcAI AGTACT 1 cut(s) 304
Bme18I GGWCC 2 cut(s) 191, 338
BmeRI GACNNNNNGTC 1 cut(s) 197
BmgT120I GGNCC 2 cut(s) 191, 338
BmiI GGNNCC 1 cut(s) 340
BpmI CTGGAG 2 cut(s) 207, 336
BpuEI CTTGAG 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 3 cut(s) 66, 136, 244
BseXI GCAGC 2 cut(s) 187, 244
BslFI GGGAC 1 cut(s) 268
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 1 cut(s) 272
Bsp1407I TGTACA 1 cut(s) 53
Bsp143I GATC 3 cut(s) 159, 308, 367
BspLI GGNNCC 1 cut(s) 340
BspMAI CTGCAG 1 cut(s) 262
BspMI ACCTGC 1 cut(s) 101
BsrGI TGTACA 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 3 cut(s) 159, 308, 367
BssT1I CCWWGG 1 cut(s) 249
Bst6I CTCTTC 1 cut(s) 301
BstAUI TGTACA 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 237
BstF5I GGATG 3 cut(s) 66, 136, 244
BstKTI GATC 3 cut(s) 162, 311, 370
BstMBI GATC 3 cut(s) 159, 308, 367
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstSFI CTRYAG 1 cut(s) 258
BstV1I GCAGC 2 cut(s) 187, 244
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
BtsCI GGATG 3 cut(s) 66, 136, 244
BveI ACCTGC 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 191, 338
Csp6I GTAC 2 cut(s) 54, 303
CviAII CATG 3 cut(s) 57, 163, 228
CviJI RGCY 8 cut(s) 11, 75, 83, 139, 178, 220, 235, 280
CviKI_1 RGCY 8 cut(s) 11, 75, 83, 139, 178, 220, 235, 280
CviQI GTAC 2 cut(s) 54, 303
DpnI GATC 3 cut(s) 161, 310, 369
DpnII GATC 3 cut(s) 159, 308, 367
DraI TTTAAA 1 cut(s) 16
DriI GACNNNNNGTC 1 cut(s) 197
Eam1104I CTCTTC 1 cut(s) 301
Eam1105I GACNNNNNGTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 249
Eco47I GGWCC 2 cut(s) 191, 338
Eco57I CTGAAG 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 3 cut(s) 60, 166, 231
FaiI YATR 4 cut(s) 58, 164, 229, 323
FaqI GGGAC 1 cut(s) 268
FatI CATG 3 cut(s) 56, 162, 227
Fnu4HI GCNGC 2 cut(s) 176, 233
FokI GGATG 3 cut(s) 73, 143, 231
Fsp4HI GCNGC 2 cut(s) 176, 233
FspBI CTAG 2 cut(s) 116, 306
GluI GCNGC 2 cut(s) 176, 233
GsuI CTGGAG 2 cut(s) 207, 336
Hin1II CATG 3 cut(s) 60, 166, 231
HphI GGTGA 2 cut(s) 24, 77
Hpy166II GTNNAC 2 cut(s) 32, 54
Hpy188III TCNNGA 4 cut(s) 89, 116, 186, 371
Hpy8I GTNNAC 2 cut(s) 32, 54
HpyAV CCTTC 1 cut(s) 277
HpyCH4V TGCA 3 cut(s) 175, 227, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
Hsp92II CATG 3 cut(s) 60, 166, 231
Kzo9I GATC 3 cut(s) 159, 308, 367
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 6 cut(s) 93, 96, 102, 112, 171, 300
Lsp1109I GCAGC 2 cut(s) 187, 244
MaeI CTAG 2 cut(s) 116, 306
MaeIII GTNAC 1 cut(s) 371
MalI GATC 3 cut(s) 161, 310, 369
MboI GATC 3 cut(s) 159, 308, 367
MboII GAAGA 2 cut(s) 288, 377
MflI RGATCY 1 cut(s) 308
MnlI CCTC 5 cut(s) 45, 182, 256, 281, 319
MseI TTAA 3 cut(s) 15, 147, 180
Mva1269I GAATGC 1 cut(s) 272
MwoI GCNNNNNNNGC 1 cut(s) 217
NdeII GATC 3 cut(s) 159, 308, 367
NlaIII CATG 3 cut(s) 60, 166, 231
NlaIV GGNNCC 1 cut(s) 340
NmuCI GTSAC 1 cut(s) 371
PctI GAATGC 1 cut(s) 272
PkrI GCNGC 2 cut(s) 177, 234
PspN4I GGNNCC 1 cut(s) 340
PspPI GGNCC 2 cut(s) 191, 338
PstI CTGCAG 1 cut(s) 262
PsuI RGATCY 1 cut(s) 308
RsaI GTAC 2 cut(s) 55, 304
RsaNI GTAC 2 cut(s) 54, 303
SaqAI TTAA 3 cut(s) 15, 147, 180
SatI GCNGC 2 cut(s) 176, 233
Sau3AI GATC 3 cut(s) 159, 308, 367
Sau96I GGNCC 2 cut(s) 191, 338
ScaI AGTACT 1 cut(s) 304
SetI ASST 6 cut(s) 13, 37, 115, 180, 222, 237
SfcI CTRYAG 1 cut(s) 258
SinI GGWCC 2 cut(s) 191, 338
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
SspMI CTAG 2 cut(s) 116, 306
StyI CCWWGG 1 cut(s) 249
TatI WGTACW 2 cut(s) 53, 302
Tru1I TTAA 3 cut(s) 15, 147, 180
Tru9I TTAA 3 cut(s) 15, 147, 180
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 2 cut(s) 175, 232
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 1 cut(s) 135
VpaK11BI GGWCC 2 cut(s) 191, 338
XbaI TCTAGA 1 cut(s) 115
XspI CTAG 2 cut(s) 116, 306
ZrmI AGTACT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.