Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000288

Physical Location & Seq

Genomic Coordinates Reverse (-)

35162540 .. 35162911

Gene Structure 372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19447

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTCTACGCCGACCCTACAAGTGAGGGACATGGTTGAACTCGATGAAACTGAACGAAAGATCTTCAAAATGTTGCTGGGAACGCTTGACCATTATAAACTGAAGACAGAGCTTCGTGTCGCAGGTGGATGGGTCCGTGATAAGCTTCTGGGAGCAGAATGCAATGACATTGACATTGCTTTGGAAAATATGATGGGGAGCGATTTTGTTAAAATGGTGGAAAAGTACATGAAGTTTATGGGGGAAGAGGTCCGAGGAAGTGCCATTATTCGAAGCAATCCCAGCCAATCAAAATATCTGGAAACGGCGAGGCTGCGCATATTTGGTACATGGGTTGATTTTGTGAACTTACGTTGTGAAGAGTACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

123

Amino Acids

14.28

Weight (kDa)

5.5

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PolyA_pol	PF01743	38 - 122	9.1e-13	Poly A polymerase head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca	FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica	MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica	Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis	pycom05g03810 pycom10g03770
rosa_chinensis	RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata	RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora	Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii	Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa	Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha	Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana	Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	96
AarI	CACCTGC	1 cut(s)	113
Acc16I	TGCGCA	1 cut(s)	317
Acc36I	ACCTGC	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	122
AfaI	GTAC	3 cut(s)	227, 328, 365
AgsI	TTSAA	2 cut(s)	38, 67
AluBI	AGCT	2 cut(s)	112, 145
AluI	AGCT	2 cut(s)	112, 145
ApeKI	GCWGC	1 cut(s)	313
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	2 cut(s)	133, 250
AsuII	TTCGAA	1 cut(s)	271
AvaII	GGWCC	2 cut(s)	133, 250
BaeI	ACNNNNGTAYC	2 cut(s)	318, 351
BbsI	GAAGAC	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	300
BccI	CCATC	2 cut(s)	123, 187
BceAI	ACGGC	1 cut(s)	321
BfuAI	ACCTGC	1 cut(s)	113
BglII	AGATCT	1 cut(s)	60
BisI	GCNGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	315
Bme18I	GGWCC	2 cut(s)	133, 250
BmgT120I	GGNCC	2 cut(s)	133, 250
BmiI	GGNNCC	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	110
Bpu14I	TTCGAA	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	253
Bse3DI	GCAATG	2 cut(s)	169, 174
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	134
BseMI	GCAATG	2 cut(s)	169, 174
BseXI	GCAGC	1 cut(s)	300
BseYI	CCCAGC	2 cut(s)	76, 281
BslFI	GGGAC	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	41
BsmI	GAATGC	1 cut(s)	164
Bsp119I	TTCGAA	1 cut(s)	271
Bsp143I	GATC	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	134
BspMI	ACCTGC	1 cut(s)	113
BspT104I	TTCGAA	1 cut(s)	271
BsrDI	GCAATG	2 cut(s)	169, 174
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	2 cut(s)	240, 354
BstBI	TTCGAA	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 282
BstV1I	GCAGC	1 cut(s)	300
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	60
BstYI	RGATCY	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	134
BveI	ACCTGC	1 cut(s)	113
CfoI	GCGC	1 cut(s)	318
Cfr13I	GGNCC	2 cut(s)	133, 250
Csp6I	GTAC	3 cut(s)	226, 327, 364
CviAII	CATG	3 cut(s)	31, 229, 330
CviJI	RGCY	4 cut(s)	112, 145, 285, 313
CviKI_1	RGCY	4 cut(s)	112, 145, 285, 313
CviQI	GTAC	3 cut(s)	226, 327, 364
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
Eam1104I	CTCTTC	2 cut(s)	240, 354
EarI	CTCTTC	2 cut(s)	240, 354
Eco47I	GGWCC	2 cut(s)	133, 250
Eco57I	CTGAAG	1 cut(s)	122
FaeI	CATG	3 cut(s)	34, 232, 333
FaiI	YATR	7 cut(s)	32, 96, 191, 230, 239, 320, 331
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	3 cut(s)	30, 228, 329
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	314
FokI	GGATG	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	314
FspI	TGCGCA	1 cut(s)	317
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	1 cut(s)	314
GsaI	CCCAGC	2 cut(s)	80, 285
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	3 cut(s)	34, 232, 333
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	143
Hpy166II	GTNNAC	2 cut(s)	6, 346
Hpy188I	TCNGA	1 cut(s)	254
Hpy188III	TCNNGA	1 cut(s)	299
Hpy8I	GTNNAC	2 cut(s)	6, 346
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	1 cut(s)	162
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 282
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	3 cut(s)	34, 232, 333
HspAI	GCGC	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	60
LmnI	GCTCC	2 cut(s)	152, 198
LpnPI	CCDG	5 cut(s)	62, 108, 134, 284, 295
Lsp1109I	GCAGC	1 cut(s)	300
MaeII	ACGT	1 cut(s)	352
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	4 cut(s)	55, 115, 257, 371
MflI	RGATCY	1 cut(s)	60
MnlI	CCTC	4 cut(s)	18, 241, 248, 303
MseI	TTAA	1 cut(s)	210
Mva1269I	GAATGC	1 cut(s)	164
MwoI	GCNNNNNNNGC	2 cut(s)	82, 282
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	3 cut(s)	34, 232, 333
NlaIV	GGNNCC	1 cut(s)	134
NsbI	TGCGCA	1 cut(s)	317
NspV	TTCGAA	1 cut(s)	271
PaqCI	CACCTGC	1 cut(s)	113
PctI	GAATGC	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	315
PsiI	TTATAA	1 cut(s)	96
PspFI	CCCAGC	2 cut(s)	76, 281
PspN4I	GGNNCC	1 cut(s)	134
PspPI	GGNCC	2 cut(s)	133, 250
PsuI	RGATCY	1 cut(s)	60
RsaI	GTAC	3 cut(s)	227, 328, 365
RsaNI	GTAC	3 cut(s)	226, 327, 364
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	1 cut(s)	314
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	2 cut(s)	133, 250
SetI	ASST	5 cut(s)	114, 127, 147, 252, 355
SfuI	TTCGAA	1 cut(s)	271
SinI	GGWCC	2 cut(s)	133, 250
TaaI	ACNGT	1 cut(s)	368
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	2 cut(s)	42, 271
TatI	WGTACW	2 cut(s)	225, 363
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TseI	GCWGC	1 cut(s)	313
TspDTI	ATGAA	2 cut(s)	60, 245
TspGWI	ACGGA	1 cut(s)	125
VpaK11BI	GGWCC	2 cut(s)	133, 250
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.