Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003541.1

Orthogroup ID

OG0000288

Physical Location & Seq

Genomic Coordinates Forward (+)

225608 .. 231686

Gene Structure 6079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003541.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

atggtgatgtctacgccaactgtacatgtgggagataccattgagcttgatgaaactgaagagaagatcttcaaaaggctgcttggaacgcttgaccattatggacttaagactgagcttcgtgtcgcaggtggatgggtccgtgataagcttctgggaaaagagtgcaaggacattgacattgctttggaagatatgatggacagcaagtttgttgagaaggtgagagactacttgttgtctgtgggggaagaggttcaaggaatcgctatcattccaggtaatcctgatcaatcaaaacatttggaaacggcaaggatgcgcatcttaaatgtatgggttgattttgtgaacttacgttgtgaagagtacagtgatgatagccgcattcccactatggacattagtcacattatcttatttggaataagggtagagagagttgaagatctaaaatgtgggaaaattgctactcctttaccaccaaaggatacatttatggaggatccgctacgagttcttcgagctatccgttttggtgcaaggttcggattcatactaggtgaacaactaaaggaagctgctgcctgtgatgaagtgaaagctgctctatcagctaaaattagcagagagcgaattggagctgaagacgaacaaagaaggctctccttttatgctgcaatgttccttccacttaggaagaccatgtataaagataggaaagcaaaagatgttcctgtcgtgaattatattttcagagactcccttaaacaaagagtcagtgatgctgaaactgttattaatttacacaatgcattggagaagtttttgtctttgcttcctcactttgtaccaaatggggatgtaaaactcaccgaagttgatttgggaagagaatatgttgatgtccctcttacatcaaaagaatcaaaactccaagtgttaacagcctatcctgatttttgtcttggtggagcaggtctagataaattctgggatgtaaagccattacttaatggaaaggagatcatggatgctttgcagcttaaatctggaggaccacttgtcagtaaatggcaaaggaagctacttgcatggcagcttgctcatcctttggggactgcagaggaatgcctcaagtggctgaaggaaacacactcttcaagtactgtttatgtacattatacaactgattatcttcacccatgtccacagagttggttccaaaagatagtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

412

Amino Acids

46.91

Weight (kDa)

6.12

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca	FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica	MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica	Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis	pycom05g03810 pycom10g03770
rosa_chinensis	RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata	RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora	Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii	Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa	Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha	Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana	Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	119
Acc16I	TGCGCA	1 cut(s)	323
Acc36I	ACCTGC	2 cut(s)	119, 968
AccI	GTMKAC	1 cut(s)	11
AciI	CCGC	2 cut(s)	385, 509
AclWI	GGATC	2 cut(s)	500, 513
AcsI	RAATTY	1 cut(s)	989
AcuI	CTGAAG	3 cut(s)	78, 666, 1166
AfaI	GTAC	5 cut(s)	24, 371, 852, 1168, 1179
AflII	CTTAAG	1 cut(s)	107
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	4 cut(s)	73, 260, 446, 1164
AhdI	GACNNNNNGTC	1 cut(s)	1064
AjnI	CCWGG	1 cut(s)	277
Alw26I	GTCTC	2 cut(s)	222, 753
AlwI	GGATC	2 cut(s)	500, 513
ApeKI	GCWGC	7 cut(s)	79, 581, 584, 605, 677, 1042, 1099
ApoI	RAATTY	1 cut(s)	989
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AseI	ATTAAT	1 cut(s)	801
Asp700I	GAANNNNTTC	2 cut(s)	68, 255
AspLEI	GCGC	1 cut(s)	324
AspS9I	GGNCC	2 cut(s)	139, 1058
AsuHPI	GGTGA	5 cut(s)	16, 235, 575, 865, 1193
AvaII	GGWCC	2 cut(s)	139, 1058
BamHI	GGATCC	1 cut(s)	505
BbsI	GAAGAC	2 cut(s)	654, 707
BbvI	GCAGC	7 cut(s)	66, 568, 571, 592, 664, 1054, 1111
BccI	CCATC	2 cut(s)	129, 193
BceAI	ACGGC	1 cut(s)	327
BciT130I	CCWGG	1 cut(s)	279
BciVI	GTATCC	1 cut(s)	484
BclI	TGATCA	1 cut(s)	289
BcoDI	GTCTC	2 cut(s)	222, 753
BfaI	CTAG	2 cut(s)	560, 983
BfmI	CTRYAG	1 cut(s)	1122
BfrI	CTTAAG	1 cut(s)	107
BfuAI	ACCTGC	2 cut(s)	119, 968
BfuI	GTATCC	1 cut(s)	484
BglII	AGATCT	2 cut(s)	66, 448
BisI	GCNGC	8 cut(s)	80, 385, 582, 585, 606, 678, 1043, 1100
BlsI	GCNGC	8 cut(s)	81, 386, 583, 586, 607, 679, 1044, 1101
BmcAI	AGTACT	1 cut(s)	1168
Bme1390I	CCNGG	1 cut(s)	279
Bme18I	GGWCC	2 cut(s)	139, 1058
BmeRI	GACNNNNNGTC	1 cut(s)	1064
BmgT120I	GGNCC	2 cut(s)	139, 1058
BmiI	GGNNCC	3 cut(s)	140, 507, 1223
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	4 cut(s)	309, 333, 775, 1024
BoxI	GACNNNNGTC	1 cut(s)	405
BpiI	GAAGAC	2 cut(s)	654, 707
BpmI	CTGGAG	1 cut(s)	1074
BpuEI	CTTGAG	1 cut(s)	1121
BsaBI	GATNNNNATC	1 cut(s)	323
Bse3DI	GCAATG	2 cut(s)	180, 687
Bse8I	GATNNNNATC	1 cut(s)	323
BseBI	CCWGG	1 cut(s)	279
BseGI	GGATG	6 cut(s)	140, 324, 868, 1003, 1039, 1108
BseJI	GATNNNNATC	1 cut(s)	323
BseMI	GCAATG	2 cut(s)	180, 687
BseMII	CTCAG	1 cut(s)	105
BseXI	GCAGC	7 cut(s)	66, 568, 571, 592, 664, 1054, 1111
BslFI	GGGAC	2 cut(s)	893, 1132
BsmAI	GTCTC	2 cut(s)	222, 753
BsmFI	GGGAC	2 cut(s)	893, 1132
BsmI	GAATGC	2 cut(s)	387, 1136
Bsp1407I	TGTACA	2 cut(s)	22, 1177
Bsp143I	GATC	5 cut(s)	66, 289, 448, 505, 1026
BspACI	CCGC	2 cut(s)	385, 509
BspCNI	CTCAG	1 cut(s)	106
BspLI	GGNNCC	3 cut(s)	140, 507, 1223
BspMAI	CTGCAG	1 cut(s)	1126
BspMI	ACCTGC	2 cut(s)	119, 968
BspPI	GGATC	2 cut(s)	500, 513
BspTI	CTTAAG	1 cut(s)	107
BsrDI	GCAATG	2 cut(s)	180, 687
BsrGI	TGTACA	2 cut(s)	22, 1177
BssMI	GATC	5 cut(s)	66, 289, 448, 505, 1026
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	4 cut(s)	22, 374, 796, 1171
Bst6I	CTCTTC	5 cut(s)	54, 246, 360, 886, 1165
BstAFI	CTTAAG	1 cut(s)	107
BstAUI	TGTACA	2 cut(s)	22, 1177
BstC8I	GCNNGC	1 cut(s)	1104
BstDEI	CTNAG	2 cut(s)	114, 695
BstF5I	GGATG	6 cut(s)	140, 324, 868, 1003, 1039, 1108
BstHHI	GCGC	1 cut(s)	324
BstKTI	GATC	5 cut(s)	69, 292, 451, 508, 1029
BstMAI	GTCTC	2 cut(s)	222, 753
BstMBI	GATC	5 cut(s)	66, 289, 448, 505, 1026
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 614, 1084
BstNI	CCWGG	1 cut(s)	279
BstNSI	RCATGY	1 cut(s)	29
BstPAI	GACNNNNGTC	1 cut(s)	405
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	1122
BstV1I	GCAGC	7 cut(s)	66, 568, 571, 592, 664, 1054, 1111
BstV2I	GAAGAC	2 cut(s)	654, 707
BstX2I	RGATCY	3 cut(s)	66, 448, 505
BstXI	CCANNNNNNTGG	1 cut(s)	1218
BstYI	RGATCY	3 cut(s)	66, 448, 505
BsuI	GTATCC	1 cut(s)	484
BtsCI	GGATG	6 cut(s)	140, 324, 868, 1003, 1039, 1108
BtsIMutI	CAGTG	2 cut(s)	379, 787
BveI	ACCTGC	2 cut(s)	119, 968
Cac8I	GCNNGC	1 cut(s)	1104
CfoI	GCGC	1 cut(s)	324
Cfr13I	GGNCC	2 cut(s)	139, 1058
Csp6I	GTAC	5 cut(s)	23, 370, 851, 1167, 1178
CviAII	CATG	5 cut(s)	26, 706, 1030, 1095, 1206
CviQI	GTAC	5 cut(s)	23, 370, 851, 1167, 1178
DdeI	CTNAG	2 cut(s)	114, 695
DpnI	GATC	5 cut(s)	68, 291, 450, 507, 1028
DpnII	GATC	5 cut(s)	66, 289, 448, 505, 1026
DriI	GACNNNNNGTC	1 cut(s)	1064
Eam1104I	CTCTTC	5 cut(s)	54, 246, 360, 886, 1165
Eam1105I	GACNNNNNGTC	1 cut(s)	1064
EarI	CTCTTC	5 cut(s)	54, 246, 360, 886, 1165
Eco47I	GGWCC	2 cut(s)	139, 1058
Eco57I	CTGAAG	3 cut(s)	78, 666, 1166
EcoRII	CCWGG	1 cut(s)	277
EcoT22I	ATGCAT	1 cut(s)	817
FaeI	CATG	5 cut(s)	29, 709, 1033, 1098, 1209
FaqI	GGGAC	2 cut(s)	893, 1132
FatI	CATG	5 cut(s)	25, 705, 1029, 1094, 1205
FbaI	TGATCA	1 cut(s)	289
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	8 cut(s)	80, 385, 582, 585, 606, 678, 1043, 1100
FokI	GGATG	6 cut(s)	147, 331, 875, 1010, 1046, 1095
Fsp4HI	GCNGC	8 cut(s)	80, 385, 582, 585, 606, 678, 1043, 1100
FspAI	RTGCGCAY	1 cut(s)	323
FspBI	CTAG	2 cut(s)	560, 983
FspI	TGCGCA	1 cut(s)	323
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	8 cut(s)	80, 385, 582, 585, 606, 678, 1043, 1100
GsuI	CTGGAG	1 cut(s)	1074
HhaI	GCGC	1 cut(s)	324
Hin1II	CATG	5 cut(s)	29, 709, 1033, 1098, 1209
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HincII	GTYRAC	1 cut(s)	945
HindII	GTYRAC	1 cut(s)	945
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	5 cut(s)	264, 552, 761, 777, 926
HpaI	GTTAAC	1 cut(s)	945
HphI	GGTGA	5 cut(s)	16, 235, 575, 865, 1193
Hpy166II	GTNNAC	5 cut(s)	12, 352, 566, 945, 1211
Hpy188I	TCNGA	2 cut(s)	551, 758
Hpy188III	TCNNGA	5 cut(s)	287, 742, 956, 983, 1053
Hpy8I	GTNNAC	5 cut(s)	12, 352, 566, 945, 1211
HpyAV	CCTTC	4 cut(s)	214, 654, 698, 1141
HpyCH4III	ACNGT	4 cut(s)	22, 374, 796, 1171
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	7 cut(s)	168, 542, 680, 815, 1042, 1094, 1124
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 614, 1084
HpyF3I	CTNAG	2 cut(s)	114, 695
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	5 cut(s)	29, 709, 1033, 1098, 1209
HspAI	GCGC	1 cut(s)	322
Ksp22I	TGATCA	1 cut(s)	289
KspAI	GTTAAC	1 cut(s)	945
Kzo9I	GATC	5 cut(s)	66, 289, 448, 505, 1026
LmnI	GCTCC	2 cut(s)	641, 974
Lsp1109I	GCAGC	7 cut(s)	66, 568, 571, 592, 664, 1054, 1111
LweI	GCATC	4 cut(s)	309, 333, 775, 1024
MaeI	CTAG	2 cut(s)	560, 983
MaeII	ACGT	1 cut(s)	358
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	5 cut(s)	68, 291, 450, 507, 1028
MboI	GATC	5 cut(s)	66, 289, 448, 505, 1026
MflI	RGATCY	3 cut(s)	66, 448, 505
MluCI	AATT	6 cut(s)	465, 621, 636, 745, 802, 989
MlyI	GAGTC	2 cut(s)	755, 786
MnlI	CCTC	7 cut(s)	247, 496, 852, 921, 1049, 1120, 1145
Mph1103I	ATGCAT	1 cut(s)	817
MroXI	GAANNNNTTC	2 cut(s)	68, 255
MseI	TTAA	7 cut(s)	108, 329, 768, 801, 944, 1014, 1047
MspCI	CTTAAG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	279
Mva1269I	GAATGC	2 cut(s)	387, 1136
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	3 cut(s)	88, 614, 1084
NdeII	GATC	5 cut(s)	66, 289, 448, 505, 1026
NlaIII	CATG	5 cut(s)	29, 709, 1033, 1098, 1209
NlaIV	GGNNCC	3 cut(s)	140, 507, 1223
NmuCI	GTSAC	1 cut(s)	407
NsbI	TGCGCA	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	817
NspI	RCATGY	1 cut(s)	29
PaqCI	CACCTGC	1 cut(s)	119
PciI	ACATGT	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	2 cut(s)	520, 529
PctI	GAATGC	2 cut(s)	387, 1136
PdmI	GAANNNNTTC	2 cut(s)	68, 255
PfeI	GAWTC	3 cut(s)	264, 552, 926
PkrI	GCNGC	8 cut(s)	81, 386, 583, 586, 607, 679, 1044, 1101
PleI	GAGTC	2 cut(s)	755, 785
PpsI	GAGTC	2 cut(s)	755, 785
PscI	ACATGT	1 cut(s)	25
PshAI	GACNNNNGTC	1 cut(s)	405
PshBI	ATTAAT	1 cut(s)	801
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	3 cut(s)	140, 507, 1223
PspPI	GGNCC	2 cut(s)	139, 1058
PstI	CTGCAG	1 cut(s)	1126
PsuI	RGATCY	3 cut(s)	66, 448, 505
RsaI	GTAC	5 cut(s)	24, 371, 852, 1168, 1179
RsaNI	GTAC	5 cut(s)	23, 370, 851, 1167, 1178
SaqAI	TTAA	7 cut(s)	108, 329, 768, 801, 944, 1014, 1047
SatI	GCNGC	8 cut(s)	80, 385, 582, 585, 606, 678, 1043, 1100
Sau3AI	GATC	5 cut(s)	66, 289, 448, 505, 1026
Sau96I	GGNCC	2 cut(s)	139, 1058
ScaI	AGTACT	1 cut(s)	1168
SchI	GAGTC	2 cut(s)	755, 786
ScrFI	CCNGG	1 cut(s)	279
SfaNI	GCATC	4 cut(s)	309, 333, 775, 1024
SfcI	CTRYAG	1 cut(s)	1122
SinI	GGWCC	2 cut(s)	139, 1058
SmlI	CTYRAG	2 cut(s)	107, 1136
SmoI	CTYRAG	2 cut(s)	107, 1136
Sse9I	AATT	6 cut(s)	465, 621, 636, 745, 802, 989
SsiI	CCGC	2 cut(s)	385, 509
SspMI	CTAG	2 cut(s)	560, 983
StyD4I	CCNGG	1 cut(s)	277
TaaI	ACNGT	4 cut(s)	22, 374, 796, 1171
TaiI	ACGT	1 cut(s)	361
TaqI	TCGA	1 cut(s)	523
TasI	AATT	6 cut(s)	465, 621, 636, 745, 802, 989
TatI	WGTACW	4 cut(s)	22, 369, 1166, 1177
TauI	GCSGC	1 cut(s)	387
TfiI	GAWTC	3 cut(s)	264, 552, 926
Tru1I	TTAA	7 cut(s)	108, 329, 768, 801, 944, 1014, 1047
Tru9I	TTAA	7 cut(s)	108, 329, 768, 801, 944, 1014, 1047
TscAI	CASTG	2 cut(s)	379, 787
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	7 cut(s)	79, 581, 584, 605, 677, 1042, 1099
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	3 cut(s)	66, 544, 609
TspGWI	ACGGA	2 cut(s)	131, 521
TspRI	CASTG	2 cut(s)	379, 787
Vha464I	CTTAAG	1 cut(s)	107
VpaK11BI	GGWCC	2 cut(s)	139, 1058
VspI	ATTAAT	1 cut(s)	801
XapI	RAATTY	1 cut(s)	989
XbaI	TCTAGA	1 cut(s)	982
XceI	RCATGY	1 cut(s)	29
XmiI	GTMKAC	1 cut(s)	11
XmnI	GAANNNNTTC	2 cut(s)	68, 255
XspI	CTAG	2 cut(s)	560, 983
ZrmI	AGTACT	1 cut(s)	1168
Zsp2I	ATGCAT	1 cut(s)	817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.