Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018873.1

Orthogroup ID

OG0000288

Physical Location & Seq

Genomic Coordinates Forward (+)

17782 .. 22709

Gene Structure 4928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018873.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

atggtgatgtctacgccaactgtacatgtgagagataccattgaacttgatggaactgaagagaagatctttgaaaggctgcttgggacgcttgaccattatggacttaagactgagcttcgtgtcgcaggtggatgggtccgtgataagcttctgggaaaagagtgcaaggacattgacattgctttggaagatatgatgggcagcaagtttgttgagaaggtgagagactacttgttgtctgtgggggacgaggttcaaggaatagctatcattccaagtaatcccgaccaatcaaaacatttggaaacagcgaggatgcgcatccttaatgtatgggttgattttgtgaacttacgttgtgaagagtacagtgatgatagccgcattcctactatgcaaaattatggcacaccagaacaggatgcactgagaagggatctaactatcaacagcttattttacaatatcaataccaaatccattgaagattggactaaatacttgattggaatatattgtgcttttaatggagttgaagatctaaaatgtgggaaaattgctagtcctttaccaccaaaggatacatttatggaggatccactacgagttcttcgagctacccgttttggtgcaaggttcggacaactaaaggaagctgctgcctgtgatgaagtgaaagctgctctatcagctaaaattagcagagagcgaattggagctgaaattgatctgatgatgtccggaaaccaacctgcccaagctatgacctatatatgtgacttgaagttattttgggttgtcttcagtcttcatccacagtgtgagccatcagaaggatgcgacagcgattgtgttgcgtacttggattgtacttggaatcttattcaattagtggggcactctaccttcaatgacgaacaaagaaggctctccttttatgctgcaatgttccttccacttaggaagaccatgtataaagataggaaagcaaaagatgttcctgtcgtgaattatattttcagagactcccttaaacaaagagtcagcgatgctgaaactgttattaatttacacaatgcattggagaagtttttgtctttgcttcctcactttgtatcaaatggggatgtaaaactcgccgaagttgatttgggaagagaatatgttgatgtgcctcttacatcgaaagaatcaaaactccgagtgttaacagggtttcttttacgagaaattaaagatttttggccagttgctttactgatgtctacacttttatatcccaccaacgtcttagacaagaatctcaaaccagaagatcgcagaccattgtttgtagaagctgaaagggccataaataatctaggtatcaacagactcttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

461

Amino Acids

52.61

Weight (kDa)

5.51

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca	FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica	MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica	Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis	pycom05g03810 pycom10g03770
rosa_chinensis	RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata	RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora	Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii	Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa	Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha	Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana	Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	119
Acc16I	TGCGCA	1 cut(s)	323
Acc36I	ACCTGC	2 cut(s)	119, 763
AccI	GTMKAC	2 cut(s)	11, 1268
AccIII	TCCGGA	1 cut(s)	743
AciI	CCGC	1 cut(s)	385
AclWI	GGATC	3 cut(s)	447, 593, 606
AcoI	YGGCCR	1 cut(s)	1247
AcuI	CTGAAG	2 cut(s)	78, 790
AdeI	CACNNNGTG	1 cut(s)	824
AfaI	GTAC	4 cut(s)	24, 371, 863, 874
AfiI	CCNNNNNNNGG	1 cut(s)	836
AflII	CTTAAG	1 cut(s)	107
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	8 cut(s)	44, 74, 260, 488, 539, 787, 890, 913
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
Alw26I	GTCTC	2 cut(s)	222, 1020
AlwI	GGATC	3 cut(s)	447, 593, 606
Aor13HI	TCCGGA	1 cut(s)	743
AoxI	GGCC	2 cut(s)	1247, 1350
ApeKI	GCWGC	6 cut(s)	79, 204, 659, 662, 683, 944
AseI	ATTAAT	1 cut(s)	1068
AspLEI	GCGC	1 cut(s)	324
AspS9I	GGNCC	2 cut(s)	139, 1350
AsuHPI	GGTGA	2 cut(s)	16, 235
AvaII	GGWCC	1 cut(s)	139
BaeGI	GKGCMC	1 cut(s)	903
BalI	TGGCCA	1 cut(s)	1249
BamHI	GGATCC	1 cut(s)	598
BbsI	GAAGAC	3 cut(s)	796, 803, 974
BbvI	GCAGC	6 cut(s)	66, 216, 646, 649, 670, 931
BccI	CCATC	4 cut(s)	44, 129, 193, 838
BcgI	CGANNNNNNTGC	2 cut(s)	839, 873
BciVI	GTATCC	1 cut(s)	577
BcoDI	GTCTC	2 cut(s)	222, 1020
BfaI	CTAG	2 cut(s)	564, 1364
BfrI	CTTAAG	1 cut(s)	107
BfuAI	ACCTGC	2 cut(s)	119, 763
BfuI	GTATCC	1 cut(s)	577
BglII	AGATCT	2 cut(s)	66, 541
BisI	GCNGC	7 cut(s)	80, 205, 385, 660, 663, 684, 945
BlsI	GCNGC	7 cut(s)	81, 206, 386, 661, 664, 685, 946
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	139, 1350
BmiI	GGNNCC	2 cut(s)	140, 600
BmsI	GCATC	5 cut(s)	309, 333, 415, 830, 1042
BpiI	GAAGAC	3 cut(s)	796, 803, 974
BsaBI	GATNNNNATC	1 cut(s)	323
BsaWI	WCCGGW	1 cut(s)	743
Bsc4I	CCNNNNNNNGG	1 cut(s)	836
Bse1I	ACTGG	1 cut(s)	1250
Bse3DI	GCAATG	2 cut(s)	180, 954
Bse8I	GATNNNNATC	1 cut(s)	323
BseAI	TCCGGA	1 cut(s)	743
BseGI	GGATG	7 cut(s)	140, 324, 324, 430, 814, 845, 1135
BseJI	GATNNNNATC	1 cut(s)	323
BseLI	CCNNNNNNNGG	1 cut(s)	836
BseMI	GCAATG	2 cut(s)	180, 954
BseMII	CTCAG	2 cut(s)	105, 422
BseNI	ACTGG	1 cut(s)	1250
BseSI	GKGCMC	1 cut(s)	903
BseXI	GCAGC	6 cut(s)	66, 216, 646, 649, 670, 931
BshFI	GGCC	2 cut(s)	1249, 1352
BsiSI	CCGG	1 cut(s)	744
BslFI	GGGAC	2 cut(s)	100, 263
BslI	CCNNNNNNNGG	1 cut(s)	836
BsmAI	GTCTC	2 cut(s)	222, 1020
BsmFI	GGGAC	2 cut(s)	100, 263
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	1249, 1352
Bsp1286I	GDGCHC	1 cut(s)	903
Bsp13I	TCCGGA	1 cut(s)	743
Bsp1407I	TGTACA	1 cut(s)	22
Bsp143I	GATC	6 cut(s)	66, 439, 541, 598, 730, 1318
BspACI	CCGC	1 cut(s)	385
BspANI	GGCC	2 cut(s)	1249, 1352
BspCNI	CTCAG	2 cut(s)	106, 423
BspEI	TCCGGA	1 cut(s)	743
BspLI	GGNNCC	2 cut(s)	140, 600
BspMI	ACCTGC	2 cut(s)	119, 763
BspPI	GGATC	3 cut(s)	447, 593, 606
BspTI	CTTAAG	1 cut(s)	107
BsrDI	GCAATG	2 cut(s)	180, 954
BsrGI	TGTACA	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	1250
BssMI	GATC	6 cut(s)	66, 439, 541, 598, 730, 1318
Bst4CI	ACNGT	4 cut(s)	22, 374, 822, 1063
Bst6I	CTCTTC	3 cut(s)	54, 360, 1153
BstAFI	CTTAAG	1 cut(s)	107
BstAUI	TGTACA	1 cut(s)	22
BstDEI	CTNAG	4 cut(s)	114, 431, 962, 1294
BstF5I	GGATG	7 cut(s)	140, 324, 324, 430, 814, 845, 1135
BstHHI	GCGC	1 cut(s)	324
BstKTI	GATC	6 cut(s)	69, 442, 544, 601, 733, 1321
BstMAI	GTCTC	2 cut(s)	222, 1020
BstMBI	GATC	6 cut(s)	66, 439, 541, 598, 730, 1318
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 692, 1349
BstNSI	RCATGY	1 cut(s)	29
BstSLI	GKGCMC	1 cut(s)	903
BstV1I	GCAGC	6 cut(s)	66, 216, 646, 649, 670, 931
BstV2I	GAAGAC	3 cut(s)	796, 803, 974
BstX2I	RGATCY	4 cut(s)	66, 439, 541, 598
BstYI	RGATCY	4 cut(s)	66, 439, 541, 598
BsuI	GTATCC	1 cut(s)	577
BsuRI	GGCC	2 cut(s)	1249, 1352
BtgZI	GCGATG	1 cut(s)	1065
BtsCI	GGATG	7 cut(s)	140, 324, 324, 430, 814, 845, 1135
BtsIMutI	CAGTG	3 cut(s)	379, 428, 827
BveI	ACCTGC	2 cut(s)	119, 763
CfoI	GCGC	1 cut(s)	324
Cfr13I	GGNCC	2 cut(s)	139, 1350
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	4 cut(s)	23, 370, 862, 873
CviAII	CATG	2 cut(s)	26, 973
CviQI	GTAC	4 cut(s)	23, 370, 862, 873
DdeI	CTNAG	4 cut(s)	114, 431, 962, 1294
DpnI	GATC	6 cut(s)	68, 441, 543, 600, 732, 1320
DpnII	GATC	6 cut(s)	66, 439, 541, 598, 730, 1318
DraIII	CACNNNGTG	1 cut(s)	824
EaeI	YGGCCR	1 cut(s)	1247
Eam1104I	CTCTTC	3 cut(s)	54, 360, 1153
EarI	CTCTTC	3 cut(s)	54, 360, 1153
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	2 cut(s)	78, 790
EcoT22I	ATGCAT	1 cut(s)	1084
FaeI	CATG	2 cut(s)	29, 976
FaqI	GGGAC	2 cut(s)	100, 263
FatI	CATG	2 cut(s)	25, 972
FblI	GTMKAC	2 cut(s)	11, 1268
Fnu4HI	GCNGC	7 cut(s)	80, 205, 385, 660, 663, 684, 945
FokI	GGATG	7 cut(s)	147, 311, 331, 437, 801, 852, 1142
Fsp4HI	GCNGC	7 cut(s)	80, 205, 385, 660, 663, 684, 945
FspAI	RTGCGCAY	1 cut(s)	323
FspBI	CTAG	2 cut(s)	564, 1364
FspI	TGCGCA	1 cut(s)	323
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	7 cut(s)	80, 205, 385, 660, 663, 684, 945
HaeIII	GGCC	2 cut(s)	1249, 1352
HapII	CCGG	1 cut(s)	744
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	1 cut(s)	324
Hin1II	CATG	2 cut(s)	29, 976
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HincII	GTYRAC	1 cut(s)	1212
HindII	GTYRAC	1 cut(s)	1212
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	6 cut(s)	880, 1028, 1044, 1193, 1303, 1377
HpaI	GTTAAC	1 cut(s)	1212
HpaII	CCGG	1 cut(s)	744
HphI	GGTGA	2 cut(s)	16, 235
Hpy166II	GTNNAC	4 cut(s)	12, 352, 1212, 1269
Hpy188I	TCNGA	5 cut(s)	644, 735, 835, 1025, 1205
Hpy188III	TCNNGA	3 cut(s)	287, 744, 1009
Hpy8I	GTNNAC	4 cut(s)	12, 352, 1212, 1269
HpyAV	CCTTC	6 cut(s)	214, 429, 830, 919, 921, 965
HpyCH4III	ACNGT	4 cut(s)	22, 374, 822, 1063
HpyCH4IV	ACGT	2 cut(s)	358, 1290
HpyCH4V	TGCA	6 cut(s)	168, 400, 428, 635, 947, 1082
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 692, 1349
HpyF3I	CTNAG	4 cut(s)	114, 431, 962, 1294
HpySE526I	ACGT	2 cut(s)	358, 1290
Hsp92II	CATG	2 cut(s)	29, 976
HspAI	GCGC	1 cut(s)	322
Kpn2I	TCCGGA	1 cut(s)	743
KspAI	GTTAAC	1 cut(s)	1212
Kzo9I	GATC	6 cut(s)	66, 439, 541, 598, 730, 1318
LmnI	GCTCC	1 cut(s)	719
Lsp1109I	GCAGC	6 cut(s)	66, 216, 646, 649, 670, 931
LweI	GCATC	5 cut(s)	309, 333, 415, 830, 1042
MaeI	CTAG	2 cut(s)	564, 1364
MaeII	ACGT	2 cut(s)	358, 1290
MaeIII	GTNAC	1 cut(s)	779
MalI	GATC	6 cut(s)	68, 441, 543, 600, 732, 1320
MboI	GATC	6 cut(s)	66, 439, 541, 598, 730, 1318
MflI	RGATCY	4 cut(s)	66, 439, 541, 598
MhlI	GDGCHC	1 cut(s)	903
MlsI	TGGCCA	1 cut(s)	1249
MluCI	AATT	9 cut(s)	403, 558, 699, 714, 726, 890, 1012, 1069, 1233
MluNI	TGGCCA	1 cut(s)	1249
MlyI	GAGTC	3 cut(s)	1022, 1053, 1371
MnlI	CCTC	5 cut(s)	247, 309, 589, 1119, 1188
Mox20I	TGGCCA	1 cut(s)	1249
Mph1103I	ATGCAT	1 cut(s)	1084
MroI	TCCGGA	1 cut(s)	743
MscI	TGGCCA	1 cut(s)	1249
MseI	TTAA	8 cut(s)	108, 330, 528, 1035, 1068, 1211, 1236, 1384
Msp20I	TGGCCA	1 cut(s)	1249
MspCI	CTTAAG	1 cut(s)	107
MspI	CCGG	1 cut(s)	744
Mva1269I	GAATGC	1 cut(s)	387
MwoI	GCNNNNNNNGC	3 cut(s)	88, 692, 1349
NdeII	GATC	6 cut(s)	66, 439, 541, 598, 730, 1318
NlaIII	CATG	2 cut(s)	29, 976
NlaIV	GGNNCC	2 cut(s)	140, 600
NmuCI	GTSAC	1 cut(s)	779
NsbI	TGCGCA	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	1084
NspI	RCATGY	1 cut(s)	29
PaqCI	CACCTGC	1 cut(s)	119
PciI	ACATGT	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	2 cut(s)	613, 622
PctI	GAATGC	1 cut(s)	387
PfeI	GAWTC	3 cut(s)	880, 1193, 1303
PkrI	GCNGC	7 cut(s)	81, 206, 386, 661, 664, 685, 946
PleI	GAGTC	3 cut(s)	1022, 1052, 1371
PpsI	GAGTC	3 cut(s)	1022, 1052, 1371
PscI	ACATGT	1 cut(s)	25
PshBI	ATTAAT	1 cut(s)	1068
PspN4I	GGNNCC	2 cut(s)	140, 600
PspPI	GGNCC	2 cut(s)	139, 1350
PsuI	RGATCY	4 cut(s)	66, 439, 541, 598
RsaI	GTAC	4 cut(s)	24, 371, 863, 874
RsaNI	GTAC	4 cut(s)	23, 370, 862, 873
SaqAI	TTAA	8 cut(s)	108, 330, 528, 1035, 1068, 1211, 1236, 1384
SatI	GCNGC	7 cut(s)	80, 205, 385, 660, 663, 684, 945
Sau3AI	GATC	6 cut(s)	66, 439, 541, 598, 730, 1318
Sau96I	GGNCC	2 cut(s)	139, 1350
SchI	GAGTC	3 cut(s)	1022, 1053, 1371
SduI	GDGCHC	1 cut(s)	903
SfaNI	GCATC	5 cut(s)	309, 333, 415, 830, 1042
SinI	GGWCC	1 cut(s)	139
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	9 cut(s)	403, 558, 699, 714, 726, 890, 1012, 1069, 1233
SsiI	CCGC	1 cut(s)	385
SspMI	CTAG	2 cut(s)	564, 1364
TaaI	ACNGT	4 cut(s)	22, 374, 822, 1063
TaiI	ACGT	2 cut(s)	361, 1293
TaqI	TCGA	2 cut(s)	616, 1187
TasI	AATT	9 cut(s)	403, 558, 699, 714, 726, 890, 1012, 1069, 1233
TatI	WGTACW	3 cut(s)	22, 369, 872
TauI	GCSGC	1 cut(s)	387
TfiI	GAWTC	3 cut(s)	880, 1193, 1303
Tru1I	TTAA	8 cut(s)	108, 330, 528, 1035, 1068, 1211, 1236, 1384
Tru9I	TTAA	8 cut(s)	108, 330, 528, 1035, 1068, 1211, 1236, 1384
TscAI	CASTG	3 cut(s)	379, 435, 827
TseFI	GTSAC	1 cut(s)	779
TseI	GCWGC	6 cut(s)	79, 204, 659, 662, 683, 944
Tsp45I	GTSAC	1 cut(s)	779
TspDTI	ATGAA	2 cut(s)	687, 803
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	3 cut(s)	379, 435, 827
Vha464I	CTTAAG	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	139
VspI	ATTAAT	1 cut(s)	1068
XceI	RCATGY	1 cut(s)	29
XmiI	GTMKAC	2 cut(s)	11, 1268
XspI	CTAG	2 cut(s)	564, 1364
Zsp2I	ATGCAT	1 cut(s)	1084

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.