Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001260.1

Orthogroup ID

OG0000288

Physical Location & Seq

Genomic Coordinates Forward (+)

84252 .. 85865

Gene Structure 1614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001260.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atgtctacgccacctgtacatgtgagagataccattgaacttgatgaaattgaagagaagatctttgaaaggctgcttagaacgctacaccattatggacttaagactgagcttcatgtcgcaggtggatggtccgtgataaggtttgtattgcttctaggaaaaaaattcaaggacatcgatattgctttggaaaatatgatgggcagcaaatttgttgagaaggtgagagactacttgttgtctatgggggaagaggttcaaggaatcgctatcattccaagcaatcccgatcaatcaaaacatttggaaatggcgaggatgcgcatcttaaatgtatgggttgattttgtgaacttacgctgtgaagagtacagtgatgatagccgcattcctgctatgcctggtgttgactcgtcagaggaaggcgaagaagatggtgactacggtgagcccactccggtggttggagatcgtgacggaggagagagtcctccagatccactttctctctcctccacggatttgagttcttgtttcctttctgttcagcacccaacctcctcctccatctccgaacagcaccgaaccaacctcttcttacttcgccgcctccgacaagaacccgacccttctccccctctgaccagcaccctgctaagaacgaagaggagagagaggttgggtgtgaggggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

232

Amino Acids

26.22

Weight (kDa)

5.15

Isoelectric Point (pI)

58.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca	FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica	MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica	Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis	pycom05g03810 pycom10g03770
rosa_chinensis	RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata	RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora	Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii	Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa	Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha	Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana	Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	113
Acc16I	TGCGCA	1 cut(s)	326
Acc36I	ACCTGC	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	2 cut(s)	388, 610
AclWI	GGATC	1 cut(s)	494
AcsI	RAATTY	2 cut(s)	167, 212
AfaI	GTAC	2 cut(s)	18, 374
AfiI	CCNNNNNNNGG	2 cut(s)	141, 467
AflII	CTTAAG	1 cut(s)	101
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	5 cut(s)	38, 53, 68, 172, 263
AjnI	CCWGG	1 cut(s)	403
AleI	CACNNNNGTG	1 cut(s)	461
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	1 cut(s)	494
ApeKI	GCWGC	2 cut(s)	73, 207
ApoI	RAATTY	2 cut(s)	167, 212
Asp700I	GAANNNNTTC	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	1 cut(s)	132
AsuHPI	GGTGA	3 cut(s)	238, 452, 461
AvaII	GGWCC	1 cut(s)	132
BanII	GRGCYC	1 cut(s)	456
BbvI	GCAGC	2 cut(s)	60, 219
BccI	CCATC	4 cut(s)	123, 196, 431, 578
BciT130I	CCWGG	1 cut(s)	405
BcoDI	GTCTC	1 cut(s)	225
BfaI	CTAG	1 cut(s)	158
BfrI	CTTAAG	1 cut(s)	101
BfuAI	ACCTGC	1 cut(s)	113
BglII	AGATCT	1 cut(s)	60
BisI	GCNGC	4 cut(s)	74, 208, 388, 610
BlsI	GCNGC	4 cut(s)	75, 209, 389, 611
Bme1390I	CCNGG	1 cut(s)	405
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	405
BmsI	GCATC	2 cut(s)	312, 336
BpmI	CTGGAG	1 cut(s)	480
Bsa29I	ATCGAT	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	519
BsaWI	WCCGGW	1 cut(s)	460
BsaXI	ACNNNNNCTCC	2 cut(s)	545, 575
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 467
Bse8I	GATNNNNATC	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	405
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	519
BseGI	GGATG	2 cut(s)	134, 327
BseJI	GATNNNNATC	1 cut(s)	326
BseLI	CCNNNNNNNGG	2 cut(s)	141, 467
BseMII	CTCAG	1 cut(s)	99
BseRI	GAGGAG	5 cut(s)	498, 505, 553, 556, 685
BseXI	GCAGC	2 cut(s)	60, 219
BshVI	ATCGAT	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	461
BslI	CCNNNNNNNGG	2 cut(s)	141, 467
BsmAI	GTCTC	1 cut(s)	225
BsmI	GAATGC	1 cut(s)	390
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp1407I	TGTACA	1 cut(s)	16
Bsp143I	GATC	4 cut(s)	60, 292, 472, 499
BspACI	CCGC	2 cut(s)	388, 610
BspCNI	CTCAG	1 cut(s)	100
BspDI	ATCGAT	1 cut(s)	180
BspMI	ACCTGC	1 cut(s)	113
BspPI	GGATC	1 cut(s)	494
BspTI	CTTAAG	1 cut(s)	101
BsrGI	TGTACA	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	519
BssMI	GATC	4 cut(s)	60, 292, 472, 499
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	2 cut(s)	377, 449
Bst6I	CTCTTC	5 cut(s)	48, 249, 363, 602, 662
BstAFI	CTTAAG	1 cut(s)	101
BstAUI	TGTACA	1 cut(s)	16
BstDEI	CTNAG	3 cut(s)	77, 108, 659
BstDSI	CCRYGG	1 cut(s)	519
BstF5I	GGATG	2 cut(s)	134, 327
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	4 cut(s)	63, 295, 475, 502
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	4 cut(s)	60, 292, 472, 499
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNI	CCWGG	1 cut(s)	405
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	403
BstV1I	GCAGC	2 cut(s)	60, 219
BstX2I	RGATCY	2 cut(s)	60, 499
BstXI	CCANNNNNNTGG	1 cut(s)	463
BstYI	RGATCY	2 cut(s)	60, 499
Bsu15I	ATCGAT	1 cut(s)	180
BsuTUI	ATCGAT	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	519
BtsCI	GGATG	2 cut(s)	134, 327
BtsIMutI	CAGTG	1 cut(s)	382
BveI	ACCTGC	1 cut(s)	113
CfoI	GCGC	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	132
ClaI	ATCGAT	1 cut(s)	180
Csp6I	GTAC	2 cut(s)	17, 373
CviAII	CATG	2 cut(s)	20, 116
CviJI	RGCY	4 cut(s)	73, 112, 387, 454
CviKI_1	RGCY	4 cut(s)	73, 112, 387, 454
CviQI	GTAC	2 cut(s)	17, 373
DdeI	CTNAG	3 cut(s)	77, 108, 659
DpnI	GATC	4 cut(s)	62, 294, 474, 501
DpnII	GATC	4 cut(s)	60, 292, 472, 499
Eam1104I	CTCTTC	5 cut(s)	48, 249, 363, 602, 662
EarI	CTCTTC	5 cut(s)	48, 249, 363, 602, 662
Eco24I	GRGCYC	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	456
FaeI	CATG	2 cut(s)	23, 119
FaiI	YATR	7 cut(s)	21, 96, 117, 200, 248, 340, 401
FatI	CATG	2 cut(s)	19, 115
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	4 cut(s)	74, 208, 388, 610
FokI	GGATG	2 cut(s)	141, 334
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	4 cut(s)	74, 208, 388, 610
FspAI	RTGCGCAY	1 cut(s)	326
FspBI	CTAG	1 cut(s)	158
FspI	TGCGCA	1 cut(s)	326
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	4 cut(s)	74, 208, 388, 610
GsuI	CTGGAG	1 cut(s)	480
HapII	CCGG	1 cut(s)	461
HhaI	GCGC	1 cut(s)	327
Hin1II	CATG	2 cut(s)	23, 119
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	3 cut(s)	267, 413, 490
HpaII	CCGG	1 cut(s)	461
HphI	GGTGA	3 cut(s)	238, 452, 461
Hpy166II	GTNNAC	3 cut(s)	6, 355, 412
Hpy188I	TCNGA	4 cut(s)	421, 577, 617, 645
Hpy188III	TCNNGA	3 cut(s)	290, 476, 497
Hpy8I	GTNNAC	3 cut(s)	6, 355, 412
HpyAV	CCTTC	3 cut(s)	217, 419, 642
HpyCH4III	ACNGT	2 cut(s)	377, 449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	3 cut(s)	77, 108, 659
Hsp92II	CATG	2 cut(s)	23, 119
HspAI	GCGC	1 cut(s)	325
Kzo9I	GATC	4 cut(s)	60, 292, 472, 499
LpnPI	CCDG	9 cut(s)	27, 108, 390, 408, 417, 474, 510, 661, 668
Lsp1109I	GCAGC	2 cut(s)	60, 219
LweI	GCATC	2 cut(s)	312, 336
MaeI	CTAG	1 cut(s)	158
MaeIII	GTNAC	2 cut(s)	440, 476
MalI	GATC	4 cut(s)	62, 294, 474, 501
MboI	GATC	4 cut(s)	60, 292, 472, 499
MboII	GAAGA	8 cut(s)	65, 70, 266, 380, 443, 446, 589, 679
MflI	RGATCY	2 cut(s)	60, 499
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	3 cut(s)	48, 167, 212
MlyI	GAGTC	2 cut(s)	407, 499
MmeI	TCCRAC	2 cut(s)	448, 640
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	2 cut(s)	102, 332
MslI	CAYNNNNRTG	2 cut(s)	93, 461
MspCI	CTTAAG	1 cut(s)	101
MspI	CCGG	1 cut(s)	461
MspR9I	CCNGG	1 cut(s)	405
Mva1269I	GAATGC	1 cut(s)	390
MvaI	CCWGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeII	GATC	4 cut(s)	60, 292, 472, 499
NlaIII	CATG	2 cut(s)	23, 119
NmuCI	GTSAC	2 cut(s)	440, 476
NsbI	TGCGCA	1 cut(s)	326
NspI	RCATGY	1 cut(s)	23
OliI	CACNNNNGTG	1 cut(s)	461
PaqCI	CACCTGC	1 cut(s)	113
PciI	ACATGT	1 cut(s)	19
PcsI	WCGNNNNNNNCGW	1 cut(s)	613
PctI	GAATGC	1 cut(s)	390
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	267
PkrI	GCNGC	4 cut(s)	75, 209, 389, 611
PleI	GAGTC	2 cut(s)	407, 498
PpsI	GAGTC	2 cut(s)	407, 498
PscI	ACATGT	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	132
PsuI	RGATCY	2 cut(s)	60, 499
RsaI	GTAC	2 cut(s)	18, 374
RsaNI	GTAC	2 cut(s)	17, 373
RseI	CAYNNNNRTG	2 cut(s)	93, 461
SaqAI	TTAA	2 cut(s)	102, 332
SatI	GCNGC	4 cut(s)	74, 208, 388, 610
Sau3AI	GATC	4 cut(s)	60, 292, 472, 499
Sau96I	GGNCC	1 cut(s)	132
SchI	GAGTC	2 cut(s)	407, 499
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	1 cut(s)	456
SetI	ASST	9 cut(s)	16, 114, 127, 146, 228, 261, 563, 597, 683
SfaNI	GCATC	2 cut(s)	312, 336
SinI	GGWCC	1 cut(s)	132
SmiMI	CAYNNNNRTG	2 cut(s)	93, 461
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	3 cut(s)	48, 167, 212
SsiI	CCGC	2 cut(s)	388, 610
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	403
TaaI	ACNGT	2 cut(s)	377, 449
TaqI	TCGA	1 cut(s)	180
TasI	AATT	3 cut(s)	48, 167, 212
TatI	WGTACW	2 cut(s)	16, 372
TauI	GCSGC	2 cut(s)	390, 612
TfiI	GAWTC	1 cut(s)	267
Tru1I	TTAA	2 cut(s)	102, 332
Tru9I	TTAA	2 cut(s)	102, 332
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	2 cut(s)	440, 476
TseI	GCWGC	2 cut(s)	73, 207
Tsp45I	GTSAC	2 cut(s)	440, 476
TspDTI	ATGAA	2 cut(s)	60, 104
TspGWI	ACGGA	3 cut(s)	124, 495, 536
TspRI	CASTG	1 cut(s)	382
Vha464I	CTTAAG	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	132
XapI	RAATTY	2 cut(s)	167, 212
XceI	RCATGY	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.