RchiOBHm_Chr5g0054011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000288
Physical Location & Seq
Forward (+)
56324751 .. 56327116
2366 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33124

Sequence Viewer

Length: 288 bp
ATGCATCACAGCCCTGCATATGTGCATCACCCCATAAAATTATATATTTTGAGTGCTAACATATGCTCAAAGTCATTGAAATGCATTTATGGTAATAATGCAAATTCGATCCCTAACCCAGAGTTTGAGTTAGGAGTTCGATTTGGATTCGCAGGAGTCAATTTGAAGGTTTTGGATTTCGATTCGCAGCAAGCCATTTCGATTTCGATTCGCAGCAGATTATATTTATCTGGTCATGATATGCTGCCCGAACTAGTCATTGAGTGTCGTGGAAGTGAACCCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.53

Weight (kDa)

6.95

Isoelectric Point (pI)

53.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis pycom05g03810 pycom10g03770
rosa_chinensis RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 103
AcsI RAATTY 1 cut(s) 103
AgsI TTSAA 2 cut(s) 79, 166
AhlI ACTAGT 1 cut(s) 253
AlwI GGATC 1 cut(s) 103
ApeKI GCWGC 3 cut(s) 187, 213, 244
ApoI RAATTY 1 cut(s) 103
AsuC2I CCSGG 1 cut(s) 282
AsuHPI GGTGA 1 cut(s) 20
BbvI GCAGC 3 cut(s) 199, 225, 231
BcnI CCSGG 1 cut(s) 282
BcuI ACTAGT 1 cut(s) 253
BfaI CTAG 1 cut(s) 254
BisI GCNGC 3 cut(s) 188, 214, 245
BlsI GCNGC 3 cut(s) 189, 215, 246
Bme1390I CCNGG 1 cut(s) 282
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 2 cut(s) 13, 34
BpuMI CCSGG 1 cut(s) 282
BseXI GCAGC 3 cut(s) 199, 225, 231
BsiSI CCGG 1 cut(s) 282
Bsp143I GATC 1 cut(s) 108
BspHI TCATGA 1 cut(s) 235
BspPI GGATC 1 cut(s) 103
BssMI GATC 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 192
BstKTI GATC 1 cut(s) 111
BstMBI GATC 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 280
BstV1I GCAGC 3 cut(s) 199, 225, 231
Cac8I GCNNGC 1 cut(s) 192
CciI TCATGA 1 cut(s) 235
CviAII CATG 1 cut(s) 236
CviJI RGCY 2 cut(s) 12, 194
CviKI_1 RGCY 2 cut(s) 12, 194
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
EcoT22I ATGCAT 2 cut(s) 6, 86
FaeI CATG 1 cut(s) 239
FatI CATG 1 cut(s) 235
FauNDI CATATG 2 cut(s) 19, 62
Fnu4HI GCNGC 3 cut(s) 188, 214, 245
Fsp4HI GCNGC 3 cut(s) 188, 214, 245
FspBI CTAG 1 cut(s) 254
GluI GCNGC 3 cut(s) 188, 214, 245
HapII CCGG 1 cut(s) 282
Hin1II CATG 1 cut(s) 239
HinfI GANTC 4 cut(s) 147, 156, 182, 208
HpaII CCGG 1 cut(s) 282
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 278
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 160
HpyCH4V TGCA 5 cut(s) 4, 17, 25, 84, 101
Hsp92II CATG 1 cut(s) 239
Kzo9I GATC 1 cut(s) 108
LpnPI CCDG 4 cut(s) 27, 132, 138, 216
Lsp1109I GCAGC 3 cut(s) 199, 225, 231
LweI GCATC 2 cut(s) 13, 34
MaeI CTAG 1 cut(s) 254
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MluCI AATT 3 cut(s) 38, 103, 160
MlyI GAGTC 1 cut(s) 165
Mph1103I ATGCAT 2 cut(s) 6, 86
MslI CAYNNNNRTG 1 cut(s) 79
MspI CCGG 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 282
NciI CCSGG 1 cut(s) 282
NdeI CATATG 2 cut(s) 19, 62
NdeII GATC 1 cut(s) 108
NlaIII CATG 1 cut(s) 239
NsiI ATGCAT 2 cut(s) 6, 86
PagI TCATGA 1 cut(s) 235
PfeI GAWTC 3 cut(s) 147, 182, 208
PkrI GCNGC 3 cut(s) 189, 215, 246
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
RseI CAYNNNNRTG 1 cut(s) 79
SatI GCNGC 3 cut(s) 188, 214, 245
Sau3AI GATC 1 cut(s) 108
SchI GAGTC 1 cut(s) 165
ScrFI CCNGG 1 cut(s) 282
SetI ASST 1 cut(s) 171
SfaNI GCATC 2 cut(s) 13, 34
SgeI CNNG 9 cut(s) 26, 131, 165, 203, 243, 248, 260, 266, 281
SmiMI CAYNNNNRTG 1 cut(s) 79
SpeI ACTAGT 1 cut(s) 253
Sse9I AATT 3 cut(s) 38, 103, 160
SspMI CTAG 1 cut(s) 254
StyD4I CCNGG 1 cut(s) 280
TaqI TCGA 5 cut(s) 107, 139, 180, 200, 206
TasI AATT 3 cut(s) 38, 103, 160
TfiI GAWTC 3 cut(s) 147, 182, 208
TseI GCWGC 3 cut(s) 187, 213, 244
XapI RAATTY 1 cut(s) 103
XspI CTAG 1 cut(s) 254
Zsp2I ATGCAT 2 cut(s) 6, 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.