Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000288

Physical Location & Seq

Genomic Coordinates Reverse (-)

13504600 .. 13506563

Gene Structure 1964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0167900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCCAATGCAGCTTCTGGAATGGCTGTGCACGATGACTGCAAGCTGAGGTTCTTGGAGCTAAAGGCAAAGAGGAGCTATCGTTTCATTTTGTTCAAGATTGAGCAACAGCAAATTGTGGTTGATACGCTCGGGGAACCCAATGCAAGTTACGACGATTTCACCTCCAGTTTTCCTGCTGATGAGTGTCGTTATGCTGTCTATGATTTCGATTTCACTACCGAAGAGAACTGCCAGAAAAGCAAGATTTTCTTCATCGCATGGTCACCGGATACATCAAAGGTGAGGATGAAGATGGTGTATGCAAGTTCCAAGGACAGATTCAAAAGAGAATTGGACGGCATTTCATTTGAATTGCAAGCAACAGATCCAAGTGAGATGAGCTTGGACATAGTGAAAGGGCGAGCCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

137

Amino Acids

15.74

Weight (kDa)

5.22

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cofilin_ADF	PF00241	7 - 135	5.2e-41	Cofilin/tropomyosin-type actin-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca	FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica	MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica	Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis	pycom05g03810 pycom10g03770
rosa_chinensis	RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata	RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora	Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii	Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa	Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha	Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana	Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	362
AcoI	YGGCCR	1 cut(s)	3
AgsI	TTSAA	3 cut(s)	97, 325, 353
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AluBI	AGCT	5 cut(s)	14, 46, 61, 78, 384
AluI	AGCT	5 cut(s)	14, 46, 61, 78, 384
Alw21I	GWGCWC	1 cut(s)	33
Alw44I	GTGCAC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	362
AlwNI	CAGNNNCTG	1 cut(s)	17
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	29
ApeKI	GCWGC	1 cut(s)	11
AsuHPI	GGTGA	3 cut(s)	154, 258, 295
AvaI	CYCGRG	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	33
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	33
BbvCI	CCTCAGC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	1 cut(s)	289
BceAI	ACGGC	1 cut(s)	355
BciVI	GTATCC	1 cut(s)	265
BfuI	GTATCC	1 cut(s)	265
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
BmeT110I	CYCGRG	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	151
Bpu10I	CCTNAGC	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	312
BsaWI	WCCGGW	1 cut(s)	268
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bse1I	ACTGG	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	88
BseSI	GKGCMC	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	23
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	269
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	367
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	1 cut(s)	367
BssT1I	CCWWGG	1 cut(s)	312
Bst6I	CTCTTC	1 cut(s)	219
BstC8I	GCNNGC	4 cut(s)	44, 360, 405, 409
BstDEI	CTNAG	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	294
BstKTI	GATC	1 cut(s)	370
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 240
BstPI	GGTNACC	1 cut(s)	264
BstSLI	GKGCMC	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BsuI	GTATCC	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	294
Cac8I	GCNNGC	4 cut(s)	44, 360, 405, 409
CaiI	CAGNNNCTG	1 cut(s)	17
CviAII	CATG	1 cut(s)	261
CviJI	RGCY	8 cut(s)	5, 14, 26, 46, 61, 78, 384, 407
CviKI_1	RGCY	8 cut(s)	5, 14, 26, 46, 61, 78, 384, 407
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	312
Eco88I	CYCGRG	1 cut(s)	131
Eco91I	GGTNACC	1 cut(s)	264
EcoO65I	GGTNACC	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	1 cut(s)	264
FaiI	YATR	5 cut(s)	195, 204, 262, 303, 392
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FatI	CATG	1 cut(s)	260
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	301
Fsp4HI	GCNGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	151
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	269
Hin1II	CATG	1 cut(s)	264
HinfI	GANTC	1 cut(s)	321
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	3 cut(s)	154, 258, 295
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188III	TCNNGA	2 cut(s)	18, 97
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	1 cut(s)	158
HpyCH4V	TGCA	6 cut(s)	11, 31, 42, 146, 305, 358
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 240
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	264
Kzo9I	GATC	1 cut(s)	367
LmnI	GCTCC	2 cut(s)	58, 75
LpnPI	CCDG	5 cut(s)	3, 181, 189, 248, 282
Lsp1109I	GCAGC	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	149, 264
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	3 cut(s)	236, 244, 304
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	1 cut(s)	33
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	114, 332, 353
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	42, 66, 175, 279
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	2 cut(s)	11, 240
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	1 cut(s)	264
NlaIV	GGNNCC	1 cut(s)	138
NmuCI	GTSAC	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	321
PkrI	GCNGC	1 cut(s)	13
PspEI	GGTNACC	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	367
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	367
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	8 cut(s)	16, 48, 53, 63, 80, 167, 285, 386
Sse9I	AATT	3 cut(s)	114, 332, 353
StyI	CCWWGG	1 cut(s)	312
TaqI	TCGA	1 cut(s)	210
TasI	AATT	3 cut(s)	114, 332, 353
TfiI	GAWTC	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	264
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	264
TspDTI	ATGAA	4 cut(s)	76, 244, 305, 336
VneI	GTGCAC	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.