Rw4G014120

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
32945019 .. 32956937
11919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G014120.1

Sequence Viewer

Length: 339 bp
ATGTGCATCTTAAATGTATGGGTTGATTTTGTGAACTTACATTGTGAAGAGTACAGTGATGGTAGCCAGGTTCCTACTATGGTAAATTCTAGCTCTGGGATGTATGGATCTTCTAGAGTTTTGTTTGTTACTGATTTGAGCTTGAGGACATTAGTCACATTACCTTACTTTGAAATAAAGGTAGAGAGTACACTGAAAATAGCCTCATCCTCTTACTTTTGTCTAAGGAAGGATGGAACCAGATTTAGGCATTTAGCTCTTAAAGTTCTGATATCGACAGTGTCTTTTGAGTGTATAAGCTCCATTATTTTGGACAATTCAAAACTATGGGAGATTTGA

Protein Analysis

112

Amino Acids

12.7

Weight (kDa)

6.06

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis pycom05g03810 pycom10g03770
rosa_chinensis RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 115
AcsI RAATTY 1 cut(s) 85
AfaI GTAC 2 cut(s) 53, 190
AfiI CCNNNNNNNGG 1 cut(s) 246
AgsI TTSAA 2 cut(s) 173, 321
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 4 cut(s) 93, 141, 257, 300
AluI AGCT 4 cut(s) 93, 141, 257, 300
AlwI GGATC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 85
BccI CCATC 2 cut(s) 53, 227
BciT130I CCWGG 1 cut(s) 68
BfaI CTAG 2 cut(s) 90, 114
Bme1390I CCNGG 1 cut(s) 68
BmiI GGNNCC 2 cut(s) 72, 238
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 1 cut(s) 15
BoxI GACNNNNGTC 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 246
BseBI CCWGG 1 cut(s) 68
BseGI GGATG 3 cut(s) 105, 206, 238
BseLI CCNNNNNNNGG 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 246
Bsp143I GATC 1 cut(s) 107
BspLI GGNNCC 2 cut(s) 72, 238
BspPI GGATC 1 cut(s) 115
BssMI GATC 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 2 cut(s) 56, 280
Bst6I CTCTTC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 224
BstF5I GGATG 3 cut(s) 105, 206, 238
BstKTI GATC 1 cut(s) 110
BstMBI GATC 1 cut(s) 107
BstNI CCWGG 1 cut(s) 68
BstPAI GACNNNNGTC 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 107
BstXI CCANNNNNNTGG 1 cut(s) 310
BstYI RGATCY 1 cut(s) 107
BtsCI GGATG 3 cut(s) 105, 206, 238
BtsIMutI CAGTG 3 cut(s) 61, 191, 285
Csp6I GTAC 2 cut(s) 52, 189
CviJI RGCY 6 cut(s) 66, 93, 141, 203, 257, 300
CviKI_1 RGCY 6 cut(s) 66, 93, 141, 203, 257, 300
CviQI GTAC 2 cut(s) 52, 189
DdeI CTNAG 1 cut(s) 224
DpnI GATC 1 cut(s) 109
DpnII GATC 1 cut(s) 107
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco32I GATATC 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 66
EcoRV GATATC 1 cut(s) 273
FaiI YATR 5 cut(s) 19, 80, 105, 296, 328
FokI GGATG 3 cut(s) 112, 193, 245
FspBI CTAG 2 cut(s) 90, 114
Hpy166II GTNNAC 2 cut(s) 34, 191
Hpy188I TCNGA 1 cut(s) 270
Hpy188III TCNNGA 1 cut(s) 114
Hpy8I GTNNAC 2 cut(s) 34, 191
HpyAV CCTTC 1 cut(s) 223
HpyCH4III ACNGT 2 cut(s) 56, 280
HpyCH4V TGCA 1 cut(s) 6
HpyF3I CTNAG 1 cut(s) 224
Kzo9I GATC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 305
LpnPI CCDG 4 cut(s) 53, 80, 81, 253
LweI GCATC 1 cut(s) 15
MaeI CTAG 2 cut(s) 90, 114
MaeIII GTNAC 2 cut(s) 127, 154
MalI GATC 1 cut(s) 109
MboI GATC 1 cut(s) 107
MboII GAAGA 2 cut(s) 59, 102
MflI RGATCY 1 cut(s) 107
MluCI AATT 2 cut(s) 85, 316
MnlI CCTC 3 cut(s) 138, 214, 220
MseI TTAA 2 cut(s) 11, 261
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
NdeII GATC 1 cut(s) 107
NlaIV GGNNCC 2 cut(s) 72, 238
NmuCI GTSAC 1 cut(s) 154
PflFI GACNNNGTC 1 cut(s) 280
PshAI GACNNNNGTC 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 72, 238
PsuI RGATCY 1 cut(s) 107
PsyI GACNNNGTC 1 cut(s) 280
RsaI GTAC 2 cut(s) 53, 190
RsaNI GTAC 2 cut(s) 52, 189
SaqAI TTAA 2 cut(s) 11, 261
Sau3AI GATC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 68
SetI ASST 7 cut(s) 72, 95, 143, 166, 183, 259, 302
SfaNI GCATC 1 cut(s) 15
SgeI CNNG 7 cut(s) 79, 80, 102, 108, 126, 154, 252
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
Sse9I AATT 2 cut(s) 85, 316
SspMI CTAG 2 cut(s) 90, 114
StyD4I CCNGG 1 cut(s) 66
TaaI ACNGT 2 cut(s) 56, 280
TaqI TCGA 1 cut(s) 275
TasI AATT 2 cut(s) 85, 316
TatI WGTACW 2 cut(s) 51, 188
Tru1I TTAA 2 cut(s) 11, 261
Tru9I TTAA 2 cut(s) 11, 261
TscAI CASTG 3 cut(s) 61, 198, 285
TseFI GTSAC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 154
TspRI CASTG 3 cut(s) 61, 198, 285
Tth111I GACNNNGTC 1 cut(s) 280
XapI RAATTY 1 cut(s) 85
XbaI TCTAGA 1 cut(s) 113
XspI CTAG 2 cut(s) 90, 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.