Rh4CG074000
ERF Family

Belongs to the GST superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000288
Physical Location & Seq
Reverse (-)
13655364 .. 13661557
6194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG074000.1

Sequence Viewer

Length: 1134 bp
ATGTTGCTATGGATGAGCGGTTTAAGGAGGAAAGTGAATATTGTAAGTGTCATTTCCACCCCTAATAAAAGCAGCGCCTTCTTCGTCTCTCCACCCCTAATAGCAAAATATCATCCTCTACCTCGACTCTTAGAGCTGCCGCGTTCTCCATCAGGTGGCTTTCTTCATGCATGCGATCAAAATCCTACATGCTTCTCTAGGAGGACTTATTGGAACTTGGCCTTTATTTTGTATCAATGCAGAAAGCACATATTGATCCTTTCACACAAGGTATTTGCAAGCCATCTGCAGCTTAAGGGGTTCCGCTCGGAGGGATGGGAAGTGGCAGCATCTCAAGAGGTTTTAGAGGCGAGTTCAGGCAATGGCAAATCATTTCGGTTTACTTTGTATGCTGTGGTGAATTGGGACCTAAGTTACTTTGTATGCAAGCTTTTGAAGTCAATCTCAGTGTTGAAGGCTTTTGAAATCAGTCTTCATCCACAGTGTGAGCCGTCAGAAGGATGTGACAGCGATTGTGTTGCGTACTTGGATTTTACTTGGAATCTTATTCAATTAGTGGGGCACTCTACCTTCAATGACGAACAAAGAAGGCTCTCCTTTTATGCTGCAATGTTGCTCCAGCAGGTGTCTCGGGTGTATCAGTCGATGAAGATTGAACATCTATCTCGGATGATCCCATTTTATGACTTTTCTGTTGTAGAGAAGATATATGTGGATGCTGTTAAACATAACTTCATAGCTATGAAAGTCGACCATATGAAGGGTGTTATGATGTTTGGTAACTTGAGTCCACGGATGTGGGATTTTTTCATCAAAGTTGGGGAAGAACAAGAAAAGGCAACCAAAACATGTTTGGAGATTCTGAAGACCATAGAAGAGCATGGACTGTGTGAGAAGAAGTTCTTTGGTGGTGACGCAATCGGATTGGCTGATCTTATTTTGGGGTGGGTCATCCACATATTGTTGCCTATGGAAACTATTACGGGAATCAAGCTTATAGAAGCCGAAACATTTCCTTCTTTGCATTTATGGTTGGAAAATTTTTCTGAAATTCCTGCATTCAAAGAGAACTTGCCTGATATGGATAGAGTAATGGAATTTTTCACAAAGACAAGGGAGAGCTTCATTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418
Pfam Domains
Protein Families
GST_C GST_N

Protein Analysis

377

Amino Acids

43.41

Weight (kDa)

7.62

Isoelectric Point (pI)

53.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis pycom05g03810 pycom10g03770
rosa_chinensis RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 613
Acc36I ACCTGC 1 cut(s) 613
AccB7I CCANNNNNTGG 1 cut(s) 155
AccBSI CCGCTC 2 cut(s) 18, 306
AccI GTMKAC 1 cut(s) 750
AccII CGCG 1 cut(s) 142
AciI CCGC 3 cut(s) 18, 140, 304
AclWI GGATC 2 cut(s) 250, 667
AcsI RAATTY 3 cut(s) 1039, 1050, 1097
AcuI CTGAAG 1 cut(s) 884
AdeI CACNNNGTG 1 cut(s) 485
AfaI GTAC 1 cut(s) 524
AfiI CCNNNNNNNGG 4 cut(s) 155, 310, 497, 760
AflII CTTAAG 1 cut(s) 293
AflIII ACRYGT 1 cut(s) 848
AgsI TTSAA 7 cut(s) 436, 454, 464, 551, 574, 656, 1063
AleI CACNNNNGTG 1 cut(s) 796
AluBI AGCT 6 cut(s) 136, 292, 430, 740, 994, 1122
AluI AGCT 6 cut(s) 136, 292, 430, 740, 994, 1122
Alw26I GTCTC 2 cut(s) 91, 633
AlwI GGATC 2 cut(s) 250, 667
Ama87I CYCGRG 1 cut(s) 630
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 5 cut(s) 72, 136, 289, 326, 605
ApoI RAATTY 3 cut(s) 1039, 1050, 1097
Asp700I GAANNNNTTC 2 cut(s) 899, 1011
AspLEI GCGC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 406
AsuHPI GGTGA 2 cut(s) 409, 923
AvaI CYCGRG 1 cut(s) 630
AvaII GGWCC 1 cut(s) 406
BaeGI GKGCMC 1 cut(s) 564
BbsI GAAGAC 2 cut(s) 464, 872
BbvI GCAGC 5 cut(s) 84, 123, 301, 338, 592
BccI CCATC 3 cut(s) 157, 291, 309
BceAI ACGGC 1 cut(s) 475
BcgI CGANNNNNNTGC 4 cut(s) 500, 534, 611, 645
BcoDI GTCTC 2 cut(s) 91, 633
BfaI CTAG 1 cut(s) 198
BfmI CTRYAG 1 cut(s) 287
BfoI RGCGCY 1 cut(s) 78
BfrI CTTAAG 1 cut(s) 293
BfuAI ACCTGC 1 cut(s) 613
BisI GCNGC 6 cut(s) 73, 137, 140, 290, 327, 606
BlsI GCNGC 6 cut(s) 74, 138, 141, 291, 328, 607
Bme18I GGWCC 1 cut(s) 406
BmeT110I CYCGRG 1 cut(s) 630
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 2 cut(s) 302, 407
BmsI GCATC 2 cut(s) 338, 706
BpiI GAAGAC 2 cut(s) 464, 872
BpmI CTGGAG 1 cut(s) 602
BpuEI CTTGAG 2 cut(s) 318, 805
BsaBI GATNNNNATC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 791
Bsc4I CCNNNNNNNGG 4 cut(s) 155, 310, 497, 760
Bse3DI GCAATG 2 cut(s) 367, 615
Bse8I GATNNNNATC 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 791
BseGI GGATG 9 cut(s) 18, 112, 320, 475, 506, 675, 721, 801, 951
BseJI GATNNNNATC 1 cut(s) 180
BseLI CCNNNNNNNGG 4 cut(s) 155, 310, 497, 760
BseMI GCAATG 2 cut(s) 367, 615
BseMII CTCAG 1 cut(s) 459
BseSI GKGCMC 1 cut(s) 564
BseXI GCAGC 5 cut(s) 84, 123, 301, 338, 592
Bsh1236I CGCG 1 cut(s) 142
BshFI GGCC 1 cut(s) 221
BsiHKCI CYCGRG 1 cut(s) 630
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 4 cut(s) 155, 310, 497, 760
BsmAI GTCTC 2 cut(s) 91, 633
BsmBI CGTCTC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 419
BsmI GAATGC 1 cut(s) 1058
BsnI GGCC 1 cut(s) 221
BsoBI CYCGRG 1 cut(s) 630
Bsp1286I GDGCHC 1 cut(s) 564
Bsp143I GATC 4 cut(s) 175, 255, 672, 931
BspACI CCGC 3 cut(s) 18, 140, 304
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 1 cut(s) 458
BspFNI CGCG 1 cut(s) 142
BspLI GGNNCC 2 cut(s) 302, 407
BspMAI CTGCAG 1 cut(s) 291
BspMI ACCTGC 1 cut(s) 613
BspPI GGATC 2 cut(s) 250, 667
BspQI GCTCTTC 1 cut(s) 870
BspTI CTTAAG 1 cut(s) 293
BsrBI CCGCTC 2 cut(s) 18, 306
BsrDI GCAATG 2 cut(s) 367, 615
BssECI CCNNGG 1 cut(s) 791
BssMI GATC 4 cut(s) 175, 255, 672, 931
Bst4CI ACNGT 2 cut(s) 483, 888
Bst6I CTCTTC 1 cut(s) 870
BstAFI CTTAAG 1 cut(s) 293
BstC8I GCNNGC 3 cut(s) 172, 280, 428
BstDEI CTNAG 3 cut(s) 130, 410, 445
BstDSI CCRYGG 1 cut(s) 791
BstF5I GGATG 9 cut(s) 18, 112, 320, 475, 506, 675, 721, 801, 951
BstFNI CGCG 1 cut(s) 142
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 4 cut(s) 178, 258, 675, 934
BstMAI GTCTC 2 cut(s) 91, 633
BstMBI GATC 4 cut(s) 175, 255, 672, 931
BstNSI RCATGY 3 cut(s) 174, 192, 852
BstSFI CTRYAG 1 cut(s) 287
BstSLI GKGCMC 1 cut(s) 564
BstUI CGCG 1 cut(s) 142
BstV1I GCAGC 5 cut(s) 84, 123, 301, 338, 592
BstV2I GAAGAC 2 cut(s) 464, 872
BstXI CCANNNNNNTGG 1 cut(s) 798
BsuRI GGCC 1 cut(s) 221
BtgI CCRYGG 1 cut(s) 791
BtsCI GGATG 9 cut(s) 18, 112, 320, 475, 506, 675, 721, 801, 951
BtsIMutI CAGTG 2 cut(s) 453, 488
BveI ACCTGC 1 cut(s) 613
Cac8I GCNNGC 3 cut(s) 172, 280, 428
CfoI GCGC 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 406
CseI GACGC 1 cut(s) 923
Csp6I GTAC 1 cut(s) 523
CviAII CATG 5 cut(s) 167, 171, 189, 849, 881
CviQI GTAC 1 cut(s) 523
DdeI CTNAG 3 cut(s) 130, 410, 445
DpnI GATC 4 cut(s) 177, 257, 674, 933
DpnII GATC 4 cut(s) 175, 255, 672, 931
DraIII CACNNNGTG 1 cut(s) 485
Eam1104I CTCTTC 1 cut(s) 870
EarI CTCTTC 1 cut(s) 870
Eco47I GGWCC 1 cut(s) 406
Eco57I CTGAAG 1 cut(s) 884
Eco88I CYCGRG 1 cut(s) 630
EcoO109I RGGNCCY 1 cut(s) 406
EcoT22I ATGCAT 1 cut(s) 172
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 5 cut(s) 170, 174, 192, 852, 884
FalI AAGNNNNNCTT 2 cut(s) 887, 919
FaqI GGGAC 1 cut(s) 419
FatI CATG 5 cut(s) 166, 170, 188, 848, 880
FauNDI CATATG 1 cut(s) 756
FblI GTMKAC 1 cut(s) 750
Fnu4HI GCNGC 6 cut(s) 73, 137, 140, 290, 327, 606
FokI GGATG 9 cut(s) 25, 99, 327, 462, 513, 682, 728, 808, 938
Fsp4HI GCNGC 6 cut(s) 73, 137, 140, 290, 327, 606
FspBI CTAG 1 cut(s) 198
GlaI GCGC 1 cut(s) 76
GluI GCNGC 6 cut(s) 73, 137, 140, 290, 327, 606
GsuI CTGGAG 1 cut(s) 602
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 1 cut(s) 221
HgaI GACGC 1 cut(s) 923
HhaI GCGC 1 cut(s) 77
Hin1II CATG 5 cut(s) 170, 174, 192, 852, 884
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HincII GTYRAC 1 cut(s) 751
HindII GTYRAC 1 cut(s) 751
HindIII AAGCTT 2 cut(s) 428, 992
HinfI GANTC 5 cut(s) 126, 541, 787, 859, 987
HphI GGTGA 2 cut(s) 409, 923
Hpy166II GTNNAC 3 cut(s) 381, 751, 791
Hpy188I TCNGA 6 cut(s) 310, 496, 669, 864, 923, 1048
Hpy188III TCNNGA 1 cut(s) 335
Hpy8I GTNNAC 3 cut(s) 381, 751, 791
HpyAV CCTTC 7 cut(s) 88, 448, 491, 580, 582, 754, 1026
HpyCH4III ACNGT 2 cut(s) 483, 888
HpyCH4V TGCA 8 cut(s) 170, 240, 278, 289, 426, 608, 1024, 1058
HpyF3I CTNAG 3 cut(s) 130, 410, 445
Hsp92II CATG 5 cut(s) 170, 174, 192, 852, 884
HspAI GCGC 1 cut(s) 75
Kzo9I GATC 4 cut(s) 175, 255, 672, 931
LguI GCTCTTC 1 cut(s) 870
LmnI GCTCC 1 cut(s) 621
LpnPI CCDG 6 cut(s) 138, 342, 608, 632, 1068, 1089
Lsp1109I GCAGC 5 cut(s) 84, 123, 301, 338, 592
LweI GCATC 2 cut(s) 338, 706
MaeI CTAG 1 cut(s) 198
MaeIII GTNAC 4 cut(s) 413, 503, 779, 911
MalI GATC 4 cut(s) 177, 257, 674, 933
MbiI CCGCTC 2 cut(s) 18, 306
MboI GATC 4 cut(s) 175, 255, 672, 931
MboII GAAGA 9 cut(s) 73, 155, 464, 661, 715, 836, 877, 887, 907
MhlI GDGCHC 1 cut(s) 564
MluCI AATT 5 cut(s) 400, 551, 1039, 1050, 1097
MlyI GAGTC 2 cut(s) 120, 796
MmeI TCCRAC 1 cut(s) 1014
MnlI CCTC 7 cut(s) 21, 126, 132, 195, 304, 331, 340
Mph1103I ATGCAT 1 cut(s) 172
MroXI GAANNNNTTC 2 cut(s) 899, 1011
MseI TTAA 4 cut(s) 23, 294, 723, 1128
MslI CAYNNNNRTG 2 cut(s) 740, 796
MspCI CTTAAG 1 cut(s) 293
Mva1269I GAATGC 1 cut(s) 1058
MvnI CGCG 1 cut(s) 142
NdeI CATATG 1 cut(s) 756
NdeII GATC 4 cut(s) 175, 255, 672, 931
NlaIII CATG 5 cut(s) 170, 174, 192, 852, 884
NlaIV GGNNCC 2 cut(s) 302, 407
NmuCI GTSAC 2 cut(s) 503, 911
NsiI ATGCAT 1 cut(s) 172
NspI RCATGY 3 cut(s) 174, 192, 852
OliI CACNNNNGTG 1 cut(s) 796
PaeI GCATGC 1 cut(s) 174
PaqCI CACCTGC 1 cut(s) 613
PciI ACATGT 1 cut(s) 848
PciSI GCTCTTC 1 cut(s) 870
PctI GAATGC 1 cut(s) 1058
PdmI GAANNNNTTC 2 cut(s) 899, 1011
PfeI GAWTC 3 cut(s) 541, 859, 987
PflMI CCANNNNNTGG 1 cut(s) 155
PkrI GCNGC 6 cut(s) 74, 138, 141, 291, 328, 607
PleI GAGTC 2 cut(s) 120, 795
PpsI GAGTC 2 cut(s) 120, 795
PpuMI RGGWCCY 1 cut(s) 406
PscI ACATGT 1 cut(s) 848
Psp5II RGGWCCY 1 cut(s) 406
PspN4I GGNNCC 2 cut(s) 302, 407
PspPI GGNCC 1 cut(s) 406
PspPPI RGGWCCY 1 cut(s) 406
PstI CTGCAG 1 cut(s) 291
RsaI GTAC 1 cut(s) 524
RsaNI GTAC 1 cut(s) 523
RseI CAYNNNNRTG 2 cut(s) 740, 796
SalI GTCGAC 1 cut(s) 749
SapI GCTCTTC 1 cut(s) 870
SaqAI TTAA 4 cut(s) 23, 294, 723, 1128
SatI GCNGC 6 cut(s) 73, 137, 140, 290, 327, 606
Sau3AI GATC 4 cut(s) 175, 255, 672, 931
Sau96I GGNCC 1 cut(s) 406
SchI GAGTC 2 cut(s) 120, 796
SduI GDGCHC 1 cut(s) 564
SfaNI GCATC 2 cut(s) 338, 706
SfcI CTRYAG 1 cut(s) 287
SinI GGWCC 1 cut(s) 406
SmiMI CAYNNNNRTG 2 cut(s) 740, 796
SmlI CTYRAG 3 cut(s) 293, 333, 784
SmoI CTYRAG 3 cut(s) 293, 333, 784
SphI GCATGC 1 cut(s) 174
Sse9I AATT 5 cut(s) 400, 551, 1039, 1050, 1097
SsiI CCGC 3 cut(s) 18, 140, 304
SspI AATATT 1 cut(s) 40
SspMI CTAG 1 cut(s) 198
TaaI ACNGT 2 cut(s) 483, 888
TaqI TCGA 3 cut(s) 124, 644, 750
TasI AATT 5 cut(s) 400, 551, 1039, 1050, 1097
TauI GCSGC 1 cut(s) 142
TfiI GAWTC 3 cut(s) 541, 859, 987
Tru1I TTAA 4 cut(s) 23, 294, 723, 1128
Tru9I TTAA 4 cut(s) 23, 294, 723, 1128
TscAI CASTG 2 cut(s) 453, 488
TseFI GTSAC 2 cut(s) 503, 911
TseI GCWGC 5 cut(s) 72, 136, 289, 326, 605
Tsp45I GTSAC 2 cut(s) 503, 911
TspDTI ATGAA 8 cut(s) 155, 464, 662, 724, 758, 773, 799, 1114
TspGWI ACGGA 1 cut(s) 808
TspRI CASTG 2 cut(s) 453, 488
Van91I CCANNNNNTGG 1 cut(s) 155
Vha464I CTTAAG 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 406
XapI RAATTY 3 cut(s) 1039, 1050, 1097
XceI RCATGY 3 cut(s) 174, 192, 852
XcmI CCANNNNNNNNNTGG 1 cut(s) 850
XmiI GTMKAC 1 cut(s) 750
XmnI GAANNNNTTC 2 cut(s) 899, 1011
XspI CTAG 1 cut(s) 198
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.