Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000288

Physical Location & Seq

Genomic Coordinates Reverse (-)

35784176 .. 35784601

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG306700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGGGGAAGAGGTCCGAGGAAGTGCCATTATTCGAAGCAATCCCAACCAATCAAAACATCTGGAAACGGCGAGGCTGCGCATATTTGGTACATGGGTTGATTTTGTGAACTTACGTTTTGAAGAGTACCCGAATTCCTGTTATGCAAAAATATGGCACACCGGAACAGGATGCAACGAGAAGGGATCTAACGATAGTTTGTTCTACAATATCAATACCAAATCAGTTGAAGATTGGACCAACAGAGGCATCAAAGATCTGAAGTCCGGGAATATTGCGACTCCTTTGTCACCAAAGGAAACTATTATGGAGGATCCAGTGCGTGGTCTGCGAGCTGTTCGTATTGGCACAAGGTATGGATTCACACTTGTTGAACAGCTAAAGGAAGCTGCTGCCAGTGATGAAGTGAAGGCAGCTTTCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

141

Amino Acids

15.85

Weight (kDa)

7.7

Isoelectric Point (pI)

31.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca	FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica	MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica	Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis	pycom05g03810 pycom10g03770
rosa_chinensis	RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata	RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora	Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii	Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa	Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha	Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana	Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	286
Acc16I	TGCGCA	1 cut(s)	80
AccB7I	CCANNNNNTGG	1 cut(s)	323
AclWI	GGATC	3 cut(s)	193, 308, 321
AcsI	RAATTY	1 cut(s)	133
AcuI	CTGAAG	1 cut(s)	281
AfaI	GTAC	2 cut(s)	91, 128
AfiI	CCNNNNNNNGG	1 cut(s)	323
AgsI	TTSAA	3 cut(s)	122, 230, 374
AluBI	AGCT	4 cut(s)	335, 379, 389, 416
AluI	AGCT	4 cut(s)	335, 379, 389, 416
AlwI	GGATC	3 cut(s)	193, 308, 321
ApeKI	GCWGC	4 cut(s)	76, 389, 392, 413
ApoI	RAATTY	1 cut(s)	133
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	13, 237
AsuC2I	CCSGG	1 cut(s)	268
AsuHPI	GGTGA	1 cut(s)	282
AsuII	TTCGAA	1 cut(s)	34
AvaII	GGWCC	2 cut(s)	13, 237
BaeI	ACNNNNGTAYC	2 cut(s)	81, 114
BamHI	GGATCC	1 cut(s)	313
BbvI	GCAGC	3 cut(s)	63, 376, 379
BceAI	ACGGC	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	268
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	4 cut(s)	77, 390, 393, 414
BlsI	GCNGC	4 cut(s)	78, 391, 394, 415
Bme1390I	CCNGG	1 cut(s)	268
Bme18I	GGWCC	2 cut(s)	13, 237
BmgT120I	GGNCC	2 cut(s)	13, 237
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	268
BmsI	GCATC	2 cut(s)	161, 258
Bpu14I	TTCGAA	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	268
BsaJI	CCNNGG	1 cut(s)	16
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse1I	ACTGG	2 cut(s)	317, 396
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	1 cut(s)	176
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseNI	ACTGG	2 cut(s)	317, 396
BseXI	GCAGC	3 cut(s)	63, 376, 379
BsiSI	CCGG	2 cut(s)	162, 267
BslI	CCNNNNNNNGG	1 cut(s)	323
Bsp119I	TTCGAA	1 cut(s)	34
Bsp143I	GATC	3 cut(s)	185, 256, 313
BspLI	GGNNCC	1 cut(s)	315
BspPI	GGATC	3 cut(s)	193, 308, 321
BspT104I	TTCGAA	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	317, 396
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	3 cut(s)	185, 256, 313
Bst6I	CTCTTC	2 cut(s)	3, 117
BstBI	TTCGAA	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	3 cut(s)	188, 259, 316
BstMBI	GATC	3 cut(s)	185, 256, 313
BstMWI	GCNNNNNNNGC	1 cut(s)	328
BstSCI	CCNGG	1 cut(s)	266
BstV1I	GCAGC	3 cut(s)	63, 376, 379
BstX2I	RGATCY	3 cut(s)	185, 256, 313
BstYI	RGATCY	3 cut(s)	185, 256, 313
BtsCI	GGATG	1 cut(s)	176
BtsIMutI	CAGTG	2 cut(s)	324, 403
Cac8I	GCNNGC	1 cut(s)	333
CfoI	GCGC	1 cut(s)	81
Cfr13I	GGNCC	2 cut(s)	13, 237
Csp6I	GTAC	2 cut(s)	90, 127
CviAII	CATG	1 cut(s)	93
CviJI	RGCY	5 cut(s)	76, 335, 379, 389, 416
CviKI_1	RGCY	5 cut(s)	76, 335, 379, 389, 416
CviQI	GTAC	2 cut(s)	90, 127
DpnI	GATC	3 cut(s)	187, 258, 315
DpnII	GATC	3 cut(s)	185, 256, 313
DrdI	GACNNNNNNGTC	1 cut(s)	286
DseDI	GACNNNNNNGTC	1 cut(s)	286
Eam1104I	CTCTTC	2 cut(s)	3, 117
EarI	CTCTTC	2 cut(s)	3, 117
Eco47I	GGWCC	2 cut(s)	13, 237
Eco57I	CTGAAG	1 cut(s)	281
EcoRI	GAATTC	1 cut(s)	133
FaeI	CATG	1 cut(s)	96
FaiI	YATR	6 cut(s)	83, 94, 144, 154, 308, 357
FatI	CATG	1 cut(s)	92
Fnu4HI	GCNGC	4 cut(s)	77, 390, 393, 414
FokI	GGATG	1 cut(s)	183
Fsp4HI	GCNGC	4 cut(s)	77, 390, 393, 414
FspI	TGCGCA	1 cut(s)	80
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	4 cut(s)	77, 390, 393, 414
HapII	CCGG	2 cut(s)	162, 267
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	1 cut(s)	96
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HinfI	GANTC	2 cut(s)	280, 360
HpaII	CCGG	2 cut(s)	162, 267
HphI	GGTGA	1 cut(s)	282
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	2 cut(s)	17, 261
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	2 cut(s)	175, 403
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	146, 174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	328
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	1 cut(s)	96
HspAI	GCGC	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	185, 256, 313
LpnPI	CCDG	7 cut(s)	47, 151, 153, 175, 280, 330, 409
Lsp1109I	GCAGC	3 cut(s)	63, 376, 379
LweI	GCATC	2 cut(s)	161, 258
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	1 cut(s)	288
MalI	GATC	3 cut(s)	187, 258, 315
MboI	GATC	3 cut(s)	185, 256, 313
MboII	GAAGA	3 cut(s)	20, 134, 242
MflI	RGATCY	3 cut(s)	185, 256, 313
MluCI	AATT	1 cut(s)	133
MlyI	GAGTC	1 cut(s)	274
MnlI	CCTC	5 cut(s)	4, 11, 66, 239, 304
MspI	CCGG	2 cut(s)	162, 267
MspR9I	CCNGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	1 cut(s)	328
NciI	CCSGG	1 cut(s)	268
NdeII	GATC	3 cut(s)	185, 256, 313
NlaIII	CATG	1 cut(s)	96
NlaIV	GGNNCC	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	288
NsbI	TGCGCA	1 cut(s)	80
NspV	TTCGAA	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	360
PflMI	CCANNNNNTGG	1 cut(s)	323
PfoI	TCCNGGA	1 cut(s)	266
PkrI	GCNGC	4 cut(s)	78, 391, 394, 415
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	2 cut(s)	13, 237
PsuI	RGATCY	3 cut(s)	185, 256, 313
RsaI	GTAC	2 cut(s)	91, 128
RsaNI	GTAC	2 cut(s)	90, 127
SatI	GCNGC	4 cut(s)	77, 390, 393, 414
Sau3AI	GATC	3 cut(s)	185, 256, 313
Sau96I	GGNCC	2 cut(s)	13, 237
SchI	GAGTC	1 cut(s)	274
ScrFI	CCNGG	1 cut(s)	268
SetI	ASST	7 cut(s)	15, 118, 337, 356, 381, 391, 418
SfaNI	GCATC	2 cut(s)	161, 258
SfuI	TTCGAA	1 cut(s)	34
SinI	GGWCC	2 cut(s)	13, 237
Sse9I	AATT	1 cut(s)	133
SspI	AATATT	1 cut(s)	274
StyD4I	CCNGG	1 cut(s)	266
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	1 cut(s)	34
TasI	AATT	1 cut(s)	133
TfiI	GAWTC	1 cut(s)	360
TscAI	CASTG	2 cut(s)	324, 403
TseFI	GTSAC	1 cut(s)	288
TseI	GCWGC	4 cut(s)	76, 389, 392, 413
Tsp45I	GTSAC	1 cut(s)	288
TspDTI	ATGAA	1 cut(s)	417
TspRI	CASTG	2 cut(s)	324, 403
Van91I	CCANNNNNTGG	1 cut(s)	323
VpaK11BI	GGWCC	2 cut(s)	13, 237
XapI	RAATTY	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.