Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000288

Physical Location & Seq

Genomic Coordinates Reverse (-)

12000646 .. 12004694

Gene Structure 4049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG066700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGACCTATATATGTGACTTGAAGTTATTTTGGGTTGTCTTCAGTCTTCATCCACAGTGTGAGCCGTCAGAAGGATGTGACAGCGATTGTGTTGCGTACTTGGATTTTACTTGGAATCTTATTCAATTAGTGGGGCACTCTACCTTCAATGACGAACAAAGAAGGCTCTCCTTTTATGCTGCAATGTTGCTCCAGCAGGTGTCTCGGGTGTATCAGTCGATGAAGATTGAACATCTATCTCGGATGATCCCATTTTATGACTTTTCTGTTGTAGAGAAGATATATGTGGATGCTGTTAAACATAACTTCATAGCTATGAAAGTCGACCATATGAAGGGTGTTATGATGTTTGGTAACTTGAAAATAGACAAAGCTACAAATACAATATACTGTGTGGCACTTGGTTTCGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

137

Amino Acids

15.91

Weight (kDa)

6.17

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	62 - 117	7.9e-06	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca	FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica	MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica	Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis	pycom05g03810 pycom10g03770
rosa_chinensis	RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata	RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora	Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii	Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa	Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha	Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana	Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	187
Acc36I	ACCTGC	1 cut(s)	187
AccI	GTMKAC	1 cut(s)	324
AclWI	GGATC	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	25
AdeI	CACNNNGTG	1 cut(s)	59
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	2 cut(s)	71, 334
AgsI	TTSAA	5 cut(s)	22, 125, 148, 230, 361
AluBI	AGCT	2 cut(s)	314, 374
AluI	AGCT	2 cut(s)	314, 374
Alw26I	GTCTC	1 cut(s)	207
AlwI	GGATC	1 cut(s)	241
Ama87I	CYCGRG	1 cut(s)	204
ApeKI	GCWGC	1 cut(s)	179
AvaI	CYCGRG	1 cut(s)	204
BaeGI	GKGCMC	1 cut(s)	138
BbsI	GAAGAC	2 cut(s)	31, 38
BbvI	GCAGC	1 cut(s)	166
BceAI	ACGGC	1 cut(s)	49
BcgI	CGANNNNNNTGC	4 cut(s)	74, 108, 185, 219
BcoDI	GTCTC	1 cut(s)	207
BfuAI	ACCTGC	1 cut(s)	187
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	280
BpiI	GAAGAC	2 cut(s)	31, 38
BpmI	CTGGAG	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 334
Bse3DI	GCAATG	1 cut(s)	189
BseGI	GGATG	4 cut(s)	49, 80, 249, 295
BseLI	CCNNNNNNNGG	2 cut(s)	71, 334
BseMI	GCAATG	1 cut(s)	189
BseSI	GKGCMC	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	166
BsiHKCI	CYCGRG	1 cut(s)	204
BslI	CCNNNNNNNGG	2 cut(s)	71, 334
BsmAI	GTCTC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	246
BspMI	ACCTGC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	189
BssMI	GATC	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	57, 392
BstF5I	GGATG	4 cut(s)	49, 80, 249, 295
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	138
BstV1I	GCAGC	1 cut(s)	166
BstV2I	GAAGAC	2 cut(s)	31, 38
BtsCI	GGATG	4 cut(s)	49, 80, 249, 295
BtsIMutI	CAGTG	1 cut(s)	62
BveI	ACCTGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	97
CviJI	RGCY	4 cut(s)	64, 166, 314, 374
CviKI_1	RGCY	4 cut(s)	64, 166, 314, 374
CviQI	GTAC	1 cut(s)	97
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
DraIII	CACNNNGTG	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	25
Eco88I	CYCGRG	1 cut(s)	204
FauNDI	CATATG	1 cut(s)	330
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	4 cut(s)	36, 87, 256, 302
Fsp4HI	GCNGC	1 cut(s)	180
GluI	GCNGC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	176
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	2 cut(s)	70, 243
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	4 cut(s)	65, 154, 156, 328
HpyCH4III	ACNGT	2 cut(s)	57, 392
HpyCH4V	TGCA	1 cut(s)	182
Kzo9I	GATC	1 cut(s)	246
LmnI	GCTCC	1 cut(s)	195
LpnPI	CCDG	2 cut(s)	182, 206
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	1 cut(s)	280
MaeIII	GTNAC	3 cut(s)	14, 77, 353
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	4 cut(s)	31, 38, 235, 289
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	1 cut(s)	125
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	314
NdeI	CATATG	1 cut(s)	330
NdeII	GATC	1 cut(s)	246
NmuCI	GTSAC	2 cut(s)	14, 77
PaqCI	CACCTGC	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	181
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	314
SalI	GTCGAC	1 cut(s)	323
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	1 cut(s)	246
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	5 cut(s)	8, 146, 201, 316, 376
SfaNI	GCATC	1 cut(s)	280
SgeI	CNNG	9 cut(s)	31, 112, 123, 205, 209, 216, 218, 252, 370
SmiMI	CAYNNNNRTG	1 cut(s)	314
Sse9I	AATT	1 cut(s)	125
TaaI	ACNGT	2 cut(s)	57, 392
TaqI	TCGA	2 cut(s)	218, 324
TasI	AATT	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	1 cut(s)	62
TseFI	GTSAC	2 cut(s)	14, 77
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	2 cut(s)	14, 77
TspDTI	ATGAA	5 cut(s)	38, 236, 298, 332, 347
TspRI	CASTG	1 cut(s)	62
XmiI	GTMKAC	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.