Rmu_sc0000711.1_g000049

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000711.1
Physical Location & Seq
Forward (+)
221240 .. 221638
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000711.1_g000049.1.cds

Sequence Viewer

Length: 309 bp
atgggtgagtgtggctgtcccgcctatcctgatttatgtcttggtggagcaggtctagataaagtctgggatgtaaagccattacttaatggaaaggagatcatggatgctttgcagcttaaatctggaggaccactagtcagtaaatgggaagctacttgcatggcagcttgctcatccttggggactgcagaggaatgcctcaagtggctgaaggaaacacactcttcaagtactagatctgctggagatatggaggaattgaatggacccaacaacaagaaaagtaaaactgaagatcgagactaa

Protein Analysis

102

Amino Acids

10.91

Weight (kDa)

4.97

Isoelectric Point (pI)

54.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis pycom05g03810 pycom10g03770
rosa_chinensis RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 41
AciI CCGC 1 cut(s) 21
AcuI CTGAAG 1 cut(s) 233
AfaI GTAC 1 cut(s) 235
AgsI TTSAA 2 cut(s) 231, 265
AhdI GACNNNNNGTC 1 cut(s) 137
AhlI ACTAGT 1 cut(s) 136
AluBI AGCT 3 cut(s) 118, 155, 170
AluI AGCT 3 cut(s) 118, 155, 170
Alw26I GTCTC 1 cut(s) 297
ApeKI GCWGC 2 cut(s) 115, 167
AspS9I GGNCC 2 cut(s) 131, 269
AsuHPI GGTGA 1 cut(s) 17
AvaII GGWCC 2 cut(s) 131, 269
BbvI GCAGC 2 cut(s) 127, 179
BcoDI GTCTC 1 cut(s) 297
BcuI ACTAGT 1 cut(s) 136
BfaI CTAG 3 cut(s) 56, 137, 237
BfmI CTRYAG 1 cut(s) 189
BfuAI ACCTGC 1 cut(s) 41
BglII AGATCT 1 cut(s) 239
BisI GCNGC 2 cut(s) 116, 168
BlsI GCNGC 2 cut(s) 117, 169
BmcAI AGTACT 1 cut(s) 235
Bme18I GGWCC 2 cut(s) 131, 269
BmeRI GACNNNNNGTC 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 131, 269
BmiI GGNNCC 1 cut(s) 271
BmsI GCATC 1 cut(s) 97
BpmI CTGGAG 2 cut(s) 147, 267
BpuEI CTTGAG 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 3 cut(s) 76, 112, 176
BseXI GCAGC 2 cut(s) 127, 179
BslFI GGGAC 2 cut(s) 3, 199
BsmAI GTCTC 1 cut(s) 297
BsmFI GGGAC 2 cut(s) 3, 199
BsmI GAATGC 1 cut(s) 203
Bsp143I GATC 3 cut(s) 99, 239, 298
BspACI CCGC 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 271
BspMAI CTGCAG 1 cut(s) 193
BspMI ACCTGC 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 3 cut(s) 99, 239, 298
BssT1I CCWWGG 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 172
BstF5I GGATG 3 cut(s) 76, 112, 176
BstKTI GATC 3 cut(s) 102, 242, 301
BstMAI GTCTC 1 cut(s) 297
BstMBI GATC 3 cut(s) 99, 239, 298
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 127, 179
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
BtsCI GGATG 3 cut(s) 76, 112, 176
BveI ACCTGC 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 172
Cfr13I GGNCC 2 cut(s) 131, 269
Csp6I GTAC 1 cut(s) 234
CviAII CATG 2 cut(s) 103, 163
CviJI RGCY 6 cut(s) 15, 79, 118, 155, 170, 211
CviKI_1 RGCY 6 cut(s) 15, 79, 118, 155, 170, 211
CviQI GTAC 1 cut(s) 234
DpnI GATC 3 cut(s) 101, 241, 300
DpnII GATC 3 cut(s) 99, 239, 298
DriI GACNNNNNGTC 1 cut(s) 137
Eam1104I CTCTTC 1 cut(s) 232
Eam1105I GACNNNNNGTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 180
Eco47I GGWCC 2 cut(s) 131, 269
Eco57I CTGAAG 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 2 cut(s) 106, 166
FaiI YATR 4 cut(s) 37, 104, 164, 254
FaqI GGGAC 2 cut(s) 3, 199
FatI CATG 2 cut(s) 102, 162
FauI CCCGC 1 cut(s) 28
Fnu4HI GCNGC 2 cut(s) 116, 168
FokI GGATG 3 cut(s) 83, 119, 163
Fsp4HI GCNGC 2 cut(s) 116, 168
FspBI CTAG 3 cut(s) 56, 137, 237
GluI GCNGC 2 cut(s) 116, 168
GsuI CTGGAG 2 cut(s) 147, 267
Hin1II CATG 2 cut(s) 106, 166
HphI GGTGA 1 cut(s) 17
Hpy188III TCNNGA 4 cut(s) 29, 56, 126, 302
HpyAV CCTTC 1 cut(s) 208
HpyCH4V TGCA 3 cut(s) 115, 162, 191
Hsp92II CATG 2 cut(s) 106, 166
Kzo9I GATC 3 cut(s) 99, 239, 298
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 5 cut(s) 36, 42, 52, 111, 231
Lsp1109I GCAGC 2 cut(s) 127, 179
LweI GCATC 1 cut(s) 97
MaeI CTAG 3 cut(s) 56, 137, 237
MalI GATC 3 cut(s) 101, 241, 300
MboI GATC 3 cut(s) 99, 239, 298
MboII GAAGA 2 cut(s) 219, 308
MflI RGATCY 1 cut(s) 239
MluCI AATT 1 cut(s) 260
MnlI CCTC 4 cut(s) 122, 187, 212, 250
MseI TTAA 2 cut(s) 87, 120
Mva1269I GAATGC 1 cut(s) 203
NdeII GATC 3 cut(s) 99, 239, 298
NlaIII CATG 2 cut(s) 106, 166
NlaIV GGNNCC 1 cut(s) 271
PctI GAATGC 1 cut(s) 203
PkrI GCNGC 2 cut(s) 117, 169
PspN4I GGNNCC 1 cut(s) 271
PspPI GGNCC 2 cut(s) 131, 269
PstI CTGCAG 1 cut(s) 193
PsuI RGATCY 1 cut(s) 239
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SaqAI TTAA 2 cut(s) 87, 120
SatI GCNGC 2 cut(s) 116, 168
Sau3AI GATC 3 cut(s) 99, 239, 298
Sau96I GGNCC 2 cut(s) 131, 269
ScaI AGTACT 1 cut(s) 235
SetI ASST 4 cut(s) 55, 120, 157, 172
SfaNI GCATC 1 cut(s) 97
SfcI CTRYAG 1 cut(s) 189
SinI GGWCC 2 cut(s) 131, 269
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SpeI ACTAGT 1 cut(s) 136
Sse9I AATT 1 cut(s) 260
SsiI CCGC 1 cut(s) 21
SspMI CTAG 3 cut(s) 56, 137, 237
StyI CCWWGG 1 cut(s) 180
TaqI TCGA 1 cut(s) 301
TasI AATT 1 cut(s) 260
TatI WGTACW 1 cut(s) 233
Tru1I TTAA 2 cut(s) 87, 120
Tru9I TTAA 2 cut(s) 87, 120
TseI GCWGC 2 cut(s) 115, 167
VpaK11BI GGWCC 2 cut(s) 131, 269
XbaI TCTAGA 1 cut(s) 55
XspI CTAG 3 cut(s) 56, 137, 237
ZrmI AGTACT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.