Rorug07G0004300

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
364345 .. 367763
3419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0004300.1

Sequence Viewer

Length: 1161 bp
ATGAGCAGTAAATCATTATCACCAGTAGCAGCACTATTATCTGTAACAGTTATTGGGAATAACAGTACTGGTGTTATGGAGAATAACACAAAAGCCGCAACACCAAAGGCTGGTGGTGTTCATCACCATTATCATCATCATGGATTGGTCAAGAGGATTCTAAATATTGCTCTGGTGTGTGTGGCTGTTACTCTGGCTTCCCTTCTCTTCTACATCGCTGTCTTCCCCGGCGGCGGACCTATTTATGATCCTTTGTTCTCAACTAAATCTCAGGATCCCTTGGATGCAGTTCTGAGAAATGCATCCATGAAGGACAAGACCATAATCGTCACAACACTGAATGATGCGTGGGCAGAACCCAACTCAATATTCGATCTGTTTCTCGAGAGTTTTCGGATCGGAAACAACACGAATCGGCTGCTGAAGCATCTGGTGGTGATCTGCTTGGACCGTAAGGCATACGCTCGTTGCTTGGCTCTTCACCCTCATTGCTACCAACTCTACACTCAAGGTGCCAACTTTACCAGCGAGGCAGCTTTCATGTCCTCCGATTACTTGCACATGATGTGGAGAAGAATCCAGTTTTTGACTTCTATTCTCGAAAAAGGATACAGCTTTGTCTTTACGGACACTGACATTATGTGGCTTAGGGACCCATTCCCACAATTCTTCCCAGATGCAGACTTCCAAATTGCATGTGACTACTTCCGAGGCGATTCTTACGATGTGAACAACCTTCCGAACGGAGGATTTACCTATGTAGTCTCTAATAAACGGACCACCCAATTCTACAACTTTTGGTACTTCTCGAGGCAGGCGTATCCGAATAATCACGACCAGGACGTGCTCAACAAGATCAAATCTGATCCGTTCATCACCAGCATCGGATTGAAAATGAGATTCTTGGACACCAAATACTTTGGCGGCTTCTGTCAGCCCAGTAAAGATTTAAACCTGGTTTGCACAATGCACGCTAATTGCTGTGTTGGTCTCGATAACAAAGTCAATGACCTCAAAATTCTGCTTCAAGATTGGAGAAATTACGTGGCATTGCCTACTTCTAATACCACCACGCCTCCAACAACTATGCCCTCATGGACCGTTCCACAGAACTGCAGTACTTCCTTCCAACGCCAACGCCACGGCAGGCACTTGTTGTGA

Protein Analysis

386

Amino Acids

43.78

Weight (kDa)

8.71

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 140 - 338 1e-68 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis pycom05g03810 pycom10g03770
rosa_chinensis RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 512
AccB7I CCANNNNNTGG 1 cut(s) 110
AciI CCGC 4 cut(s) 96, 231, 234, 924
AclWI GGATC 5 cut(s) 242, 269, 282, 404, 860
AcsI RAATTY 1 cut(s) 1017
AcuI CTGAAG 1 cut(s) 443
AfaI GTAC 3 cut(s) 67, 803, 1120
AfiI CCNNNNNNNGG 3 cut(s) 110, 233, 746
AgsI TTSAA 2 cut(s) 892, 1028
AjiI CACGTC 1 cut(s) 844
AjnI CCWGG 2 cut(s) 837, 954
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
AluBI AGCT 2 cut(s) 536, 615
AluI AGCT 2 cut(s) 536, 615
Alw21I GWGCWC 1 cut(s) 849
Alw26I GTCTC 2 cut(s) 769, 995
AlwI GGATC 5 cut(s) 242, 269, 282, 404, 860
Ama87I CYCGRG 2 cut(s) 383, 808
ApeKI GCWGC 3 cut(s) 29, 418, 533
ApoI RAATTY 1 cut(s) 1017
AspS9I GGNCC 5 cut(s) 236, 448, 652, 777, 1098
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 5 cut(s) 12, 116, 448, 473, 868
AvaI CYCGRG 2 cut(s) 383, 808
AvaII GGWCC 5 cut(s) 236, 448, 652, 777, 1098
BamHI GGATCC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 512
BbsI GAAGAC 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 849
BbvI GCAGC 3 cut(s) 41, 405, 545
BceAI ACGGC 1 cut(s) 1159
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BciT130I CCWGG 2 cut(s) 839, 956
BciVI GTATCC 2 cut(s) 602, 831
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 2 cut(s) 769, 995
BfmI CTRYAG 1 cut(s) 1114
BfuI GTATCC 2 cut(s) 602, 831
BisI GCNGC 6 cut(s) 30, 96, 232, 419, 534, 925
BlsI GCNGC 6 cut(s) 31, 97, 233, 420, 535, 926
BmcAI AGTACT 2 cut(s) 67, 1120
Bme1390I CCNGG 3 cut(s) 228, 839, 956
Bme18I GGWCC 5 cut(s) 236, 448, 652, 777, 1098
BmeT110I CYCGRG 2 cut(s) 383, 808
BmgBI CACGTC 1 cut(s) 844
BmgT120I GGNCC 5 cut(s) 236, 448, 652, 777, 1098
BmiI GGNNCC 4 cut(s) 276, 514, 653, 654
BmrFI CCNGG 3 cut(s) 228, 839, 956
BmrI ACTGGG 1 cut(s) 933
BmsI GCATC 6 cut(s) 274, 311, 334, 436, 667, 891
BmuI ACTGGG 1 cut(s) 933
BpiI GAAGAC 1 cut(s) 214
Bpu10I CCTNAGC 1 cut(s) 647
BpuEI CTTGAG 1 cut(s) 492
BpuMI CCSGG 1 cut(s) 228
BsaAI YACGTR 1 cut(s) 1045
BsaI GGTCTC 1 cut(s) 995
BsaJI CCNNGG 4 cut(s) 226, 279, 709, 1141
BsaXI ACNNNNNCTCC 2 cut(s) 1060, 1090
Bsc4I CCNNNNNNNGG 3 cut(s) 110, 233, 746
Bse1I ACTGG 4 cut(s) 23, 73, 580, 939
Bse3DI GCAATG 2 cut(s) 487, 1049
BseBI CCWGG 2 cut(s) 839, 956
BseDI CCNNGG 4 cut(s) 226, 279, 709, 1141
BseGI GGATG 2 cut(s) 289, 302
BseLI CCNNNNNNNGG 3 cut(s) 110, 233, 746
BseMI GCAATG 2 cut(s) 487, 1049
BseMII CTCAG 2 cut(s) 284, 284
BseNI ACTGG 4 cut(s) 23, 73, 580, 939
BseXI GCAGC 3 cut(s) 41, 405, 545
BshNI GGYRCC 1 cut(s) 512
BsiHKAI GWGCWC 1 cut(s) 849
BsiHKCI CYCGRG 2 cut(s) 383, 808
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 1 cut(s) 665
BslI CCNNNNNNNGG 3 cut(s) 110, 233, 746
BsmAI GTCTC 2 cut(s) 769, 995
BsmFI GGGAC 1 cut(s) 665
Bso31I GGTCTC 1 cut(s) 995
BsoBI CYCGRG 2 cut(s) 383, 808
Bsp1286I GDGCHC 1 cut(s) 849
Bsp143I GATC 7 cut(s) 247, 274, 373, 396, 438, 855, 865
BspACI CCGC 4 cut(s) 96, 231, 234, 924
BspCNI CTCAG 2 cut(s) 283, 285
BspLI GGNNCC 4 cut(s) 276, 514, 653, 654
BspMAI CTGCAG 1 cut(s) 1118
BspPI GGATC 5 cut(s) 242, 269, 282, 404, 860
BspQI GCTCTTC 1 cut(s) 483
BspT107I GGYRCC 1 cut(s) 512
BspTNI GGTCTC 1 cut(s) 995
BsrDI GCAATG 2 cut(s) 487, 1049
BsrI ACTGG 4 cut(s) 23, 73, 580, 939
BssECI CCNNGG 4 cut(s) 226, 279, 709, 1141
BssMI GATC 7 cut(s) 247, 274, 373, 396, 438, 855, 865
BssT1I CCWWGG 1 cut(s) 279
Bst2UI CCWGG 2 cut(s) 839, 956
Bst4CI ACNGT 4 cut(s) 49, 65, 452, 1102
Bst6I CTCTTC 2 cut(s) 212, 483
BstBAI YACGTR 1 cut(s) 1045
BstC8I GCNNGC 3 cut(s) 816, 972, 1148
BstDEI CTNAG 3 cut(s) 270, 293, 647
BstDSI CCRYGG 1 cut(s) 1141
BstF5I GGATG 2 cut(s) 289, 302
BstKTI GATC 7 cut(s) 250, 277, 376, 399, 441, 858, 868
BstMAI GTCTC 2 cut(s) 769, 995
BstMBI GATC 7 cut(s) 247, 274, 373, 396, 438, 855, 865
BstMWI GCNNNNNNNGC 1 cut(s) 424
BstNI CCWGG 2 cut(s) 839, 956
BstNSI RCATGY 1 cut(s) 699
BstSCI CCNGG 3 cut(s) 226, 837, 954
BstSFI CTRYAG 1 cut(s) 1114
BstV1I GCAGC 3 cut(s) 41, 405, 545
BstV2I GAAGAC 1 cut(s) 214
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BsuI GTATCC 2 cut(s) 602, 831
BtgI CCRYGG 1 cut(s) 1141
BtgZI GCGATG 1 cut(s) 199
BtrI CACGTC 1 cut(s) 844
BtsCI GGATG 2 cut(s) 289, 302
BtsIMutI CAGTG 2 cut(s) 335, 630
Cac8I GCNNGC 3 cut(s) 816, 972, 1148
Cfr13I GGNCC 5 cut(s) 236, 448, 652, 777, 1098
CsiI ACCWGGT 1 cut(s) 954
Csp6I GTAC 3 cut(s) 66, 802, 1119
CviAII CATG 6 cut(s) 140, 307, 541, 562, 696, 1095
CviQI GTAC 3 cut(s) 66, 802, 1119
DdeI CTNAG 3 cut(s) 270, 293, 647
DpnI GATC 7 cut(s) 249, 276, 375, 398, 440, 857, 867
DpnII GATC 7 cut(s) 247, 274, 373, 396, 438, 855, 865
DraI TTTAAA 1 cut(s) 951
Eam1104I CTCTTC 2 cut(s) 212, 483
EarI CTCTTC 2 cut(s) 212, 483
EciI GGCGGA 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 279
Eco31I GGTCTC 1 cut(s) 995
Eco47I GGWCC 5 cut(s) 236, 448, 652, 777, 1098
Eco57I CTGAAG 1 cut(s) 443
Eco88I CYCGRG 2 cut(s) 383, 808
EcoO109I RGGNCCY 1 cut(s) 652
EcoRII CCWGG 2 cut(s) 837, 954
EcoT14I CCWWGG 1 cut(s) 279
EcoT22I ATGCAT 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 6 cut(s) 143, 310, 544, 565, 699, 1098
FaqI GGGAC 1 cut(s) 665
FatI CATG 6 cut(s) 139, 306, 540, 561, 695, 1094
Fnu4HI GCNGC 6 cut(s) 30, 96, 232, 419, 534, 925
FokI GGATG 2 cut(s) 289, 296
Fsp4HI GCNGC 6 cut(s) 30, 96, 232, 419, 534, 925
GluI GCNGC 6 cut(s) 30, 96, 232, 419, 534, 925
HapII CCGG 1 cut(s) 228
Hin1II CATG 6 cut(s) 143, 310, 544, 565, 699, 1098
HinfI GANTC 5 cut(s) 157, 412, 576, 716, 900
HpaII CCGG 1 cut(s) 228
HphI GGTGA 5 cut(s) 12, 116, 448, 473, 868
Hpy166II GTNNAC 1 cut(s) 730
Hpy188I TCNGA 9 cut(s) 294, 396, 401, 550, 710, 741, 825, 865, 887
Hpy188III TCNNGA 9 cut(s) 151, 272, 383, 385, 599, 808, 833, 992, 1028
Hpy8I GTNNAC 1 cut(s) 730
HpyAV CCTTC 4 cut(s) 212, 304, 746, 1135
HpyCH4III ACNGT 4 cut(s) 49, 65, 452, 1102
HpyCH4IV ACGT 2 cut(s) 843, 1044
HpyCH4V TGCA 8 cut(s) 287, 302, 559, 680, 695, 963, 970, 1116
HpyF10VI GCNNNNNNNGC 1 cut(s) 424
HpyF3I CTNAG 3 cut(s) 270, 293, 647
HpySE526I ACGT 2 cut(s) 843, 1044
Hsp92II CATG 6 cut(s) 143, 310, 544, 565, 699, 1098
KflI GGGWCCC 1 cut(s) 652
Kzo9I GATC 7 cut(s) 247, 274, 373, 396, 438, 855, 865
LguI GCTCTTC 1 cut(s) 483
Lsp1109I GCAGC 3 cut(s) 41, 405, 545
LweI GCATC 6 cut(s) 274, 311, 334, 436, 667, 891
MabI ACCWGGT 1 cut(s) 954
MaeII ACGT 2 cut(s) 843, 1044
MaeIII GTNAC 4 cut(s) 43, 187, 328, 698
MalI GATC 7 cut(s) 249, 276, 375, 398, 440, 857, 867
MboI GATC 7 cut(s) 247, 274, 373, 396, 438, 855, 865
MboII GAAGA 5 cut(s) 199, 214, 470, 585, 661
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 849
MluCI AATT 6 cut(s) 665, 690, 785, 976, 1017, 1039
MmeI TCCRAC 2 cut(s) 1103, 1153
Mph1103I ATGCAT 1 cut(s) 304
MseI TTAA 1 cut(s) 950
MslI CAYNNNNRTG 1 cut(s) 138
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 3 cut(s) 228, 839, 956
MvaI CCWGG 2 cut(s) 839, 956
MwoI GCNNNNNNNGC 1 cut(s) 424
NciI CCSGG 1 cut(s) 228
NdeII GATC 7 cut(s) 247, 274, 373, 396, 438, 855, 865
NlaIII CATG 6 cut(s) 143, 310, 544, 565, 699, 1098
NlaIV GGNNCC 4 cut(s) 276, 514, 653, 654
NmuCI GTSAC 2 cut(s) 328, 698
NsiI ATGCAT 1 cut(s) 304
NspI RCATGY 1 cut(s) 699
PaeR7I CTCGAG 2 cut(s) 383, 808
PciSI GCTCTTC 1 cut(s) 483
PcsI WCGNNNNNNNCGW 2 cut(s) 815, 840
PfeI GAWTC 5 cut(s) 157, 412, 576, 716, 900
PflMI CCANNNNNTGG 1 cut(s) 110
PkrI GCNGC 6 cut(s) 31, 97, 233, 420, 535, 926
Ppu21I YACGTR 1 cut(s) 1045
PpuMI RGGWCCY 1 cut(s) 652
Psp5II RGGWCCY 1 cut(s) 652
Psp6I CCWGG 2 cut(s) 837, 954
PspGI CCWGG 2 cut(s) 837, 954
PspN4I GGNNCC 4 cut(s) 276, 514, 653, 654
PspPI GGNCC 5 cut(s) 236, 448, 652, 777, 1098
PspPPI RGGWCCY 1 cut(s) 652
PstI CTGCAG 1 cut(s) 1118
PsuI RGATCY 1 cut(s) 274
RsaI GTAC 3 cut(s) 67, 803, 1120
RsaNI GTAC 3 cut(s) 66, 802, 1119
RseI CAYNNNNRTG 1 cut(s) 138
SapI GCTCTTC 1 cut(s) 483
SaqAI TTAA 1 cut(s) 950
SatI GCNGC 6 cut(s) 30, 96, 232, 419, 534, 925
Sau3AI GATC 7 cut(s) 247, 274, 373, 396, 438, 855, 865
Sau96I GGNCC 5 cut(s) 236, 448, 652, 777, 1098
ScaI AGTACT 2 cut(s) 67, 1120
ScrFI CCNGG 3 cut(s) 228, 839, 956
SduI GDGCHC 1 cut(s) 849
SexAI ACCWGGT 1 cut(s) 954
SfaNI GCATC 6 cut(s) 274, 311, 334, 436, 667, 891
SfcI CTRYAG 1 cut(s) 1114
Sfr274I CTCGAG 2 cut(s) 383, 808
SinI GGWCC 5 cut(s) 236, 448, 652, 777, 1098
SlaI CTCGAG 2 cut(s) 383, 808
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 3 cut(s) 383, 507, 808
SmoI CTYRAG 3 cut(s) 383, 507, 808
Sse9I AATT 6 cut(s) 665, 690, 785, 976, 1017, 1039
SsiI CCGC 4 cut(s) 96, 231, 234, 924
SspI AATATT 2 cut(s) 166, 369
StyD4I CCNGG 3 cut(s) 226, 837, 954
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 4 cut(s) 49, 65, 452, 1102
TaiI ACGT 2 cut(s) 846, 1047
TaqI TCGA 5 cut(s) 372, 384, 600, 809, 993
TasI AATT 6 cut(s) 665, 690, 785, 976, 1017, 1039
TatI WGTACW 2 cut(s) 65, 1118
TauI GCSGC 3 cut(s) 98, 234, 927
TfiI GAWTC 5 cut(s) 157, 412, 576, 716, 900
Tru1I TTAA 1 cut(s) 950
Tru9I TTAA 1 cut(s) 950
TscAI CASTG 2 cut(s) 342, 637
TseFI GTSAC 2 cut(s) 328, 698
TseI GCWGC 3 cut(s) 29, 418, 533
Tsp45I GTSAC 2 cut(s) 328, 698
TspDTI ATGAA 4 cut(s) 110, 323, 529, 862
TspGWI ACGGA 4 cut(s) 641, 759, 790, 858
TspRI CASTG 2 cut(s) 342, 637
Van91I CCANNNNNTGG 1 cut(s) 110
VpaK11BI GGWCC 5 cut(s) 236, 448, 652, 777, 1098
XapI RAATTY 1 cut(s) 1017
XceI RCATGY 1 cut(s) 699
XhoI CTCGAG 2 cut(s) 383, 808
ZrmI AGTACT 2 cut(s) 67, 1120
Zsp2I ATGCAT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.