Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000288

Physical Location & Seq

Genomic Coordinates Forward (+)

84231343 .. 84232226

Gene Structure 884 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG609200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGCTTGTTTATGACAACTGTCTGTTGGCGAAGTTTTTGTCTTTGCTTCCTTATTTTGAATCAAGTGAGGTTGTACAACTCTCCAAGGTTGATTGGGGTAGTGATGTCCCTCATGCTTCAAAAGAATCAAAACTTCAAGTATTGACAGGAATTCTCTTGCGAAACAAAGAATGTTGGCGCGTTGCCTTGCTGTTGTCCACGTTGTTATATCCTAGGGACGTTGTTGTTCATTGTGCTGGAGATAATCTAAACAAGACCTTCAAACTGGAAGAACGAAGAGCTTTATTTAAGGCAGCTGAAAATGCCATAGTTAATCTTGGTCTTGATAAAGTCTGGGATTTAAAGCCATTGCTTAGCACACAAGATATCACGAATGTTTTGCAGCTCAAGTCTGGAGGACCACTAATTAGAGAATGGGTAAGCTATCCATTCTCTTTCTCGGGGAAAGTCTACGGGGCACTGAGGGATCAATACATTGATTTCATCAATGGTAGCTCTAGCTCCTTACAGCAGAAGACCAACTCGATACCTCCCCCTCTGGCTGTGGAGTTGCCTACTCCATTGAAGTTGGTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

192

Amino Acids

21.55

Weight (kDa)

8.37

Isoelectric Point (pI)

31.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca	FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica	MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica	Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis	pycom05g03810 pycom10g03770
rosa_chinensis	RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata	RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora	Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii	Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa	Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha	Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana	Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	450
AccII	CGCG	1 cut(s)	180
AclWI	GGATC	1 cut(s)	474
AcsI	RAATTY	1 cut(s)	150
AfaI	GTAC	1 cut(s)	75
AgsI	TTSAA	5 cut(s)	59, 120, 137, 262, 565
AluBI	AGCT	6 cut(s)	281, 296, 385, 423, 495, 501
AluI	AGCT	6 cut(s)	281, 296, 385, 423, 495, 501
AlwI	GGATC	1 cut(s)	474
Ama87I	CYCGRG	1 cut(s)	439
ApeKI	GCWGC	2 cut(s)	293, 382
ApoI	RAATTY	1 cut(s)	150
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspA2I	CCTAGG	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	398
AvaI	CYCGRG	1 cut(s)	439
AvaII	GGWCC	1 cut(s)	398
AvrII	CCTAGG	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	460
BbsI	GAAGAC	1 cut(s)	521
BbvI	GCAGC	2 cut(s)	305, 394
BcgI	CGANNNNNNTGC	2 cut(s)	361, 395
BfaI	CTAG	2 cut(s)	213, 498
BisI	GCNGC	2 cut(s)	294, 383
BlnI	CCTAGG	1 cut(s)	212
BlpI	GCTNAGC	1 cut(s)	353
BlsI	GCNGC	2 cut(s)	295, 384
Bme18I	GGWCC	1 cut(s)	398
BmeT110I	CYCGRG	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	398
BoxI	GACNNNNGTC	1 cut(s)	18
BpiI	GAAGAC	1 cut(s)	521
BpmI	CTGGAG	2 cut(s)	258, 414
Bpu1102I	GCTNAGC	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	371
BsaJI	CCNNGG	2 cut(s)	84, 212
Bse1I	ACTGG	1 cut(s)	270
Bse3DI	GCAATG	1 cut(s)	347
BseDI	CCNNGG	2 cut(s)	84, 212
BseMI	GCAATG	1 cut(s)	347
BseMII	CTCAG	1 cut(s)	452
BseNI	ACTGG	1 cut(s)	270
BseSI	GKGCMC	1 cut(s)	460
BseXI	GCAGC	2 cut(s)	305, 394
Bsh1236I	CGCG	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	439
BslFI	GGGAC	2 cut(s)	92, 230
BsmFI	GGGAC	2 cut(s)	92, 230
BsoBI	CYCGRG	1 cut(s)	439
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp1407I	TGTACA	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	466
Bsp1720I	GCTNAGC	1 cut(s)	353
BspCNI	CTCAG	1 cut(s)	453
BspFNI	CGCG	1 cut(s)	180
BspPI	GGATC	1 cut(s)	474
BspQI	GCTCTTC	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	347
BsrGI	TGTACA	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	2 cut(s)	84, 212
BssMI	GATC	1 cut(s)	466
BssT1I	CCWWGG	2 cut(s)	84, 212
Bst4CI	ACNGT	1 cut(s)	20
Bst6I	CTCTTC	1 cut(s)	271
BstAUI	TGTACA	1 cut(s)	73
BstDEI	CTNAG	2 cut(s)	353, 461
BstFNI	CGCG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	1 cut(s)	469
BstMBI	GATC	1 cut(s)	466
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstPAI	GACNNNNGTC	1 cut(s)	18
BstSLI	GKGCMC	1 cut(s)	460
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	305, 394
BstV2I	GAAGAC	1 cut(s)	521
BtsIMutI	CAGTG	1 cut(s)	458
CfoI	GCGC	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	398
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	8 cut(s)	281, 296, 346, 385, 423, 495, 501, 542
CviKI_1	RGCY	8 cut(s)	281, 296, 346, 385, 423, 495, 501, 542
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	2 cut(s)	353, 461
DpnI	GATC	1 cut(s)	468
DpnII	GATC	1 cut(s)	466
DraI	TTTAAA	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	271
EarI	CTCTTC	1 cut(s)	271
Eco130I	CCWWGG	2 cut(s)	84, 212
Eco32I	GATATC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	398
Eco88I	CYCGRG	1 cut(s)	439
EcoRI	GAATTC	1 cut(s)	150
EcoRV	GATATC	1 cut(s)	367
EcoT14I	CCWWGG	2 cut(s)	84, 212
ErhI	CCWWGG	2 cut(s)	84, 212
FaeI	CATG	1 cut(s)	116
FaiI	YATR	4 cut(s)	12, 114, 208, 308
FaqI	GGGAC	2 cut(s)	92, 230
FatI	CATG	1 cut(s)	112
FblI	GTMKAC	1 cut(s)	450
Fnu4HI	GCNGC	2 cut(s)	294, 383
Fsp4HI	GCNGC	2 cut(s)	294, 383
FspBI	CTAG	2 cut(s)	213, 498
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	2 cut(s)	294, 383
GsuI	CTGGAG	2 cut(s)	258, 414
HhaI	GCGC	1 cut(s)	180
Hin1II	CATG	1 cut(s)	116
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HinfI	GANTC	2 cut(s)	59, 125
Hpy166II	GTNNAC	2 cut(s)	198, 451
Hpy188III	TCNNGA	3 cut(s)	323, 370, 393
Hpy8I	GTNNAC	2 cut(s)	198, 451
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	2 cut(s)	200, 219
HpyCH4V	TGCA	1 cut(s)	382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	2 cut(s)	353, 461
HpySE526I	ACGT	2 cut(s)	200, 219
Hsp92II	CATG	1 cut(s)	116
HspAI	GCGC	1 cut(s)	178
Kzo9I	GATC	1 cut(s)	466
LguI	GCTCTTC	1 cut(s)	271
LmnI	GCTCC	1 cut(s)	506
LpnPI	CCDG	6 cut(s)	132, 222, 251, 319, 378, 524
Lsp1109I	GCAGC	2 cut(s)	305, 394
MaeI	CTAG	2 cut(s)	213, 498
MaeII	ACGT	2 cut(s)	200, 219
MalI	GATC	1 cut(s)	468
MboI	GATC	1 cut(s)	466
MboII	GAAGA	3 cut(s)	281, 288, 526
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	2 cut(s)	150, 405
MnlI	CCTC	6 cut(s)	61, 120, 389, 456, 540, 546
MseI	TTAA	3 cut(s)	288, 312, 341
MspA1I	CMGCKG	1 cut(s)	296
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	302
NdeII	GATC	1 cut(s)	466
NlaIII	CATG	1 cut(s)	116
PciSI	GCTCTTC	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	59, 125
PkrI	GCNGC	2 cut(s)	295, 384
PshAI	GACNNNNGTC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	398
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
SapI	GCTCTTC	1 cut(s)	271
SaqAI	TTAA	3 cut(s)	288, 312, 341
SatI	GCNGC	2 cut(s)	294, 383
Sau3AI	GATC	1 cut(s)	466
Sau96I	GGNCC	1 cut(s)	398
SduI	GDGCHC	1 cut(s)	460
SinI	GGWCC	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	2 cut(s)	150, 405
SspMI	CTAG	2 cut(s)	213, 498
StyI	CCWWGG	2 cut(s)	84, 212
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	2 cut(s)	203, 222
TaqI	TCGA	1 cut(s)	524
TasI	AATT	2 cut(s)	150, 405
TatI	WGTACW	1 cut(s)	73
TfiI	GAWTC	2 cut(s)	59, 125
Tru1I	TTAA	3 cut(s)	288, 312, 341
Tru9I	TTAA	3 cut(s)	288, 312, 341
TscAI	CASTG	1 cut(s)	465
TseI	GCWGC	2 cut(s)	293, 382
TspDTI	ATGAA	2 cut(s)	218, 472
TspRI	CASTG	1 cut(s)	465
VpaK11BI	GGWCC	1 cut(s)	398
XapI	RAATTY	1 cut(s)	150
XmaJI	CCTAGG	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	450
XspI	CTAG	2 cut(s)	213, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.