Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000288

Physical Location & Seq

Genomic Coordinates Reverse (-)

7474339 .. 7479316

Gene Structure 4978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGACCCTGACGTTGAGCTTGCTGCATGTACTTCCATCAGAAGGATGTGACAGGTATGTGCTTAAGAAAACAGCATTCAACAGTCTTGGTAAAGTCTGGGATTTAAAGCCATTGCTTAGCACACAAGTCATGACGAACGTTTTGCAGCTCAAGTCTGGAGGACCACTAATAATTAGAGAATGGGTAAGCTATATATTCTCCTCGGGGAAAGTCTACGGGGAACTATGGTATCAATACATTGATTTCATCAATGGTAGCTCCAGCTCCTTACAGCGGAAGACCAACTCGATGCAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

99

Amino Acids

11.23

Weight (kDa)

9.37

Isoelectric Point (pI)

13.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca	FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica	MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica	Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis	pycom05g03810 pycom10g03770
rosa_chinensis	RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata	RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora	Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii	Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa	Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha	Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana	Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	1 cut(s)	274
AclI	AACGTT	1 cut(s)	138
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	2 cut(s)	41, 273
AflII	CTTAAG	1 cut(s)	62
AgsI	TTSAA	1 cut(s)	79
AluBI	AGCT	5 cut(s)	18, 148, 189, 258, 264
AluI	AGCT	5 cut(s)	18, 148, 189, 258, 264
Ama87I	CYCGRG	1 cut(s)	202
ApeKI	GCWGC	2 cut(s)	22, 145
ArsI	GACNNNNNNTTYG	2 cut(s)	124, 156
AspS9I	GGNCC	1 cut(s)	161
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	161
BaeI	ACNNNNGTAYC	2 cut(s)	212, 245
BbsI	GAAGAC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	9, 157
BccI	CCATC	1 cut(s)	43
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BfrI	CTTAAG	1 cut(s)	62
BisI	GCNGC	2 cut(s)	23, 146
BlpI	GCTNAGC	1 cut(s)	116
BlsI	GCNGC	2 cut(s)	24, 147
Bme18I	GGWCC	1 cut(s)	161
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	161
BmsI	GCATC	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	284
BpmI	CTGGAG	2 cut(s)	177, 244
Bpu1102I	GCTNAGC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 273
Bse3DI	GCAATG	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	50
BseLI	CCNNNNNNNGG	2 cut(s)	41, 273
BseMI	GCAATG	1 cut(s)	110
BseRI	GAGGAG	1 cut(s)	190
BseXI	GCAGC	2 cut(s)	9, 157
BsiHKCI	CYCGRG	1 cut(s)	202
BslI	CCNNNNNNNGG	2 cut(s)	41, 273
BsmI	GAATGC	1 cut(s)	74
BsoBI	CYCGRG	1 cut(s)	202
Bsp1720I	GCTNAGC	1 cut(s)	116
BspACI	CCGC	1 cut(s)	274
BspHI	TCATGA	1 cut(s)	129
BspTI	CTTAAG	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	83
BstAFI	CTTAAG	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	1 cut(s)	116
BstF5I	GGATG	1 cut(s)	50
BstNSI	RCATGY	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	9, 157
BstV2I	GAAGAC	1 cut(s)	284
BtsCI	GGATG	1 cut(s)	50
Cac8I	GCNNGC	1 cut(s)	20
CciI	TCATGA	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	2 cut(s)	26, 130
CviJI	RGCY	6 cut(s)	18, 109, 148, 189, 258, 264
CviKI_1	RGCY	6 cut(s)	18, 109, 148, 189, 258, 264
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	1 cut(s)	116
DraI	TTTAAA	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	161
Eco88I	CYCGRG	1 cut(s)	202
FaeI	CATG	2 cut(s)	29, 133
FaiI	YATR	6 cut(s)	27, 57, 131, 192, 194, 226
FatI	CATG	2 cut(s)	25, 129
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	23, 146
FokI	GGATG	1 cut(s)	57
Fsp4HI	GCNGC	2 cut(s)	23, 146
GluI	GCNGC	2 cut(s)	23, 146
GsuI	CTGGAG	2 cut(s)	177, 244
Hin1II	CATG	2 cut(s)	29, 133
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	2 cut(s)	130, 156
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4IV	ACGT	2 cut(s)	11, 138
HpyCH4V	TGCA	3 cut(s)	25, 145, 292
HpyF3I	CTNAG	1 cut(s)	116
HpySE526I	ACGT	2 cut(s)	11, 138
Hsp92II	CATG	2 cut(s)	29, 133
LmnI	GCTCC	2 cut(s)	263, 269
LpnPI	CCDG	5 cut(s)	20, 37, 82, 141, 274
Lsp1109I	GCAGC	2 cut(s)	9, 157
LweI	GCATC	1 cut(s)	279
MaeII	ACGT	2 cut(s)	11, 138
MaeIII	GTNAC	1 cut(s)	47
MboII	GAAGA	1 cut(s)	289
MluCI	AATT	1 cut(s)	171
MnlI	CCTC	2 cut(s)	152, 211
MseI	TTAA	2 cut(s)	63, 104
MspA1I	CMGCKG	1 cut(s)	274
MspCI	CTTAAG	1 cut(s)	62
Mva1269I	GAATGC	1 cut(s)	74
NlaIII	CATG	2 cut(s)	29, 133
NmuCI	GTSAC	1 cut(s)	47
NspI	RCATGY	1 cut(s)	29
PagI	TCATGA	1 cut(s)	129
PctI	GAATGC	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	24, 147
Psp1406I	AACGTT	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	161
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
SaqAI	TTAA	2 cut(s)	63, 104
SatI	GCNGC	2 cut(s)	23, 146
Sau96I	GGNCC	1 cut(s)	161
SetI	ASST	8 cut(s)	14, 20, 56, 141, 150, 191, 260, 266
SfaNI	GCATC	1 cut(s)	279
SinI	GGWCC	1 cut(s)	161
SmlI	CTYRAG	2 cut(s)	62, 149
SmoI	CTYRAG	2 cut(s)	62, 149
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	1 cut(s)	274
TaaI	ACNGT	1 cut(s)	83
TaiI	ACGT	2 cut(s)	14, 141
TaqI	TCGA	1 cut(s)	287
TasI	AATT	1 cut(s)	171
TatI	WGTACW	1 cut(s)	28
Tru1I	TTAA	2 cut(s)	63, 104
Tru9I	TTAA	2 cut(s)	63, 104
TseFI	GTSAC	1 cut(s)	47
TseI	GCWGC	2 cut(s)	22, 145
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	1 cut(s)	235
Vha464I	CTTAAG	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	161
XceI	RCATGY	1 cut(s)	29
XmiI	GTMKAC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.