Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8052866.1

Orthogroup ID

OG0000288

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 461

Gene Structure 460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8052866.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 344 bp

atgcattggaaaagttcttgcctttgcttccgcactttggatccagtggagctggcgcacaactcctcgccgaagatgatttgggaaccagagaaagatcctttgaacaagaacttcacattagaggatcgaacagctttgtttagaaaagtccaaagtgccataattgatgacctaggtcttaacagagtctgggatgtaaagccattactcagtggaacggatattattaaatgtctagaccttaaatctggaggaccagtcgtcagtgaatggaaacgaaaagtatttgcatggcagctcgctcatccttcagggactgaagaggaatgcagagattggat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

114

Amino Acids

13.15

Weight (kDa)

6.28

Isoelectric Point (pI)

55.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca	FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica	MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica	Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis	pycom05g03810 pycom10g03770
rosa_chinensis	RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata	RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora	Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii	Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa	Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha	Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana	Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	31
AclWI	GGATC	4 cut(s)	35, 48, 92, 135
AcuI	CTGAAG	2 cut(s)	297, 342
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	106
AhdI	GACNNNNNGTC	1 cut(s)	263
AluBI	AGCT	3 cut(s)	52, 137, 301
AluI	AGCT	3 cut(s)	52, 137, 301
AlwI	GGATC	4 cut(s)	35, 48, 92, 135
AlwNI	CAGNNNCTG	2 cut(s)	192, 320
ApeKI	GCWGC	1 cut(s)	298
AspA2I	CCTAGG	1 cut(s)	175
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	257
AvrII	CCTAGG	1 cut(s)	175
BamHI	GGATCC	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	310
BfaI	CTAG	2 cut(s)	176, 239
BisI	GCNGC	1 cut(s)	299
BlnI	CCTAGG	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	300
Bme18I	GGWCC	1 cut(s)	257
BmeRI	GACNNNNNGTC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	2 cut(s)	42, 87
BoxI	GACNNNNGTC	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	2 cut(s)	44, 260
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	2 cut(s)	202, 307
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	226
BseNI	ACTGG	2 cut(s)	44, 260
BseRI	GAGGAG	1 cut(s)	55
BseXI	GCAGC	1 cut(s)	310
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	331
BsmI	GAATGC	1 cut(s)	335
Bsp143I	GATC	3 cut(s)	40, 97, 127
BspACI	CCGC	1 cut(s)	31
BspCNI	CTCAG	1 cut(s)	225
BspLI	GGNNCC	2 cut(s)	42, 87
BspPI	GGATC	4 cut(s)	35, 48, 92, 135
BsrI	ACTGG	2 cut(s)	44, 260
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	3 cut(s)	40, 97, 127
BssT1I	CCWWGG	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	318
BstC8I	GCNNGC	2 cut(s)	54, 303
BstDEI	CTNAG	1 cut(s)	212
BstF5I	GGATG	2 cut(s)	202, 307
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	3 cut(s)	43, 100, 130
BstMBI	GATC	3 cut(s)	40, 97, 127
BstPAI	GACNNNNGTC	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	310
BstX2I	RGATCY	2 cut(s)	40, 97
BstYI	RGATCY	2 cut(s)	40, 97
BtsCI	GGATG	2 cut(s)	202, 307
BtsIMutI	CAGTG	3 cut(s)	51, 220, 274
Cac8I	GCNNGC	2 cut(s)	54, 303
CaiI	CAGNNNCTG	2 cut(s)	192, 320
CfoI	GCGC	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	257
CviAII	CATG	1 cut(s)	294
CviJI	RGCY	4 cut(s)	52, 137, 205, 301
CviKI_1	RGCY	4 cut(s)	52, 137, 205, 301
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	3 cut(s)	42, 99, 129
DpnII	GATC	3 cut(s)	40, 97, 127
DriI	GACNNNNNGTC	1 cut(s)	263
Eam1104I	CTCTTC	1 cut(s)	318
Eam1105I	GACNNNNNGTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	257
Eco57I	CTGAAG	2 cut(s)	297, 342
EcoT14I	CCWWGG	1 cut(s)	175
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	1 cut(s)	297
FaiI	YATR	2 cut(s)	164, 295
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	1 cut(s)	293
Fnu4HI	GCNGC	1 cut(s)	299
FokI	GGATG	2 cut(s)	209, 294
Fsp4HI	GCNGC	1 cut(s)	299
FspBI	CTAG	2 cut(s)	176, 239
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	299
GsuI	CTGGAG	1 cut(s)	273
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	1 cut(s)	297
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	1 cut(s)	189
Hpy188III	TCNNGA	2 cut(s)	239, 252
HpyAV	CCTTC	1 cut(s)	321
HpyCH4V	TGCA	3 cut(s)	4, 293, 333
HpyF3I	CTNAG	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	297
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	3 cut(s)	40, 97, 127
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	7 cut(s)	38, 57, 102, 178, 237, 273, 300
Lsp1109I	GCAGC	1 cut(s)	310
MaeI	CTAG	2 cut(s)	176, 239
MalI	GATC	3 cut(s)	42, 99, 129
MboI	GATC	3 cut(s)	40, 97, 127
MboII	GAAGA	2 cut(s)	85, 335
MflI	RGATCY	2 cut(s)	40, 97
MluCI	AATT	1 cut(s)	165
MlyI	GAGTC	1 cut(s)	198
MnlI	CCTC	4 cut(s)	76, 118, 248, 319
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	183, 231, 246
Mva1269I	GAATGC	1 cut(s)	335
NdeII	GATC	3 cut(s)	40, 97, 127
NlaIII	CATG	1 cut(s)	297
NlaIV	GGNNCC	2 cut(s)	42, 87
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	335
PkrI	GCNGC	1 cut(s)	300
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
PshAI	GACNNNNGTC	1 cut(s)	177
PspN4I	GGNNCC	2 cut(s)	42, 87
PspPI	GGNCC	1 cut(s)	257
PstNI	CAGNNNCTG	2 cut(s)	192, 320
PsuI	RGATCY	2 cut(s)	40, 97
SaqAI	TTAA	3 cut(s)	183, 231, 246
SatI	GCNGC	1 cut(s)	299
Sau3AI	GATC	3 cut(s)	40, 97, 127
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	198
SetI	ASST	6 cut(s)	54, 139, 177, 181, 246, 303
SinI	GGWCC	1 cut(s)	257
Sse9I	AATT	1 cut(s)	165
SsiI	CCGC	1 cut(s)	31
SspMI	CTAG	2 cut(s)	176, 239
StyI	CCWWGG	1 cut(s)	175
TaqI	TCGA	1 cut(s)	130
TasI	AATT	1 cut(s)	165
Tru1I	TTAA	3 cut(s)	183, 231, 246
Tru9I	TTAA	3 cut(s)	183, 231, 246
TscAI	CASTG	3 cut(s)	51, 220, 274
TseI	GCWGC	1 cut(s)	298
TspGWI	ACGGA	1 cut(s)	236
TspRI	CASTG	3 cut(s)	51, 220, 274
VpaK11BI	GGWCC	1 cut(s)	257
XbaI	TCTAGA	1 cut(s)	238
XmaJI	CCTAGG	1 cut(s)	175
XspI	CTAG	2 cut(s)	176, 239
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.