Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000288

Physical Location & Seq

Genomic Coordinates Forward (+)

35677078 .. 35680418

Gene Structure 3341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38263

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTTGATGTCCCTCTTACATCGAAATAATCGAATCTCCGAGTGGTTTCTTTTACGAGAAATTAAAGATTTTTGGCGAGTTGCTTTGCTGATGTCTACACTTTTATATCCCACCAACGTCTTAAACAAGAATCTCAAACCAGAAGATCGCAGAGCTTTGCTTATAGAAGCTGAAAGGTCCATAAATAATCTAGGCGACGAGGCTGCTGAGGCGTCCTTCAAGGCGTCCAAAACAGAGCTCAAGGCGTTAAAGGCGTACGCTCTGGAAAAGAAGAAAAATGACGTCGTTTTGGTCTTTTGGAACAGAATGGGTTTAAAGGTCGCGACTGAAGGTGTTTGGACTTTGTACAGCCAATTTCAGCCCTCTCTCTTCCAAAAGGTACCAAATTCGATCCCTAACCCAGAGTTCGAGTTAGGAGCTCGATTTCGATTCGCAGCAGTCAATTTGAAGGTGTCGGAGCTCGATTCGCAGCAGGCCATTTTAAGGTATTGGAGTTCGATTCGCAGCAGGCCATTTGAAGGTCGAGATAAAGTCTGGAATGTAAAGCCATTACTTAATGGGAAGGAGGTCATGGATGCTTTGCAGCTTAAATCTGGAGGACCACTTGTCAGTAAATGGCAAAGGAAGCTACTTGCATGGCAGCTTGCTCATCCTTTGGGGACTGCAGAGGAATGCCTCAAGTGGCTGAAGGAAACACACTCTTCAAGTACTAGATCTGTTGGAGATATGGAGGAACTGAATGCACCCAACAACAAGAAATGTAAAACTGAAGATCGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

260

Amino Acids

29.96

Weight (kDa)

9.55

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca	FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica	MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica	Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis	pycom05g03810 pycom10g03770
rosa_chinensis	RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata	RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora	Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii	Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa	Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha	Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana	Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	285
Acc65I	GGTACC	1 cut(s)	379
AccB1I	GGYRCC	1 cut(s)	379
AccI	GTMKAC	1 cut(s)	95
AccII	CGCG	1 cut(s)	323
AclWI	GGATC	1 cut(s)	385
AcsI	RAATTY	1 cut(s)	385
AcuI	CTGAAG	2 cut(s)	348, 707
AcyI	GRCGYC	3 cut(s)	212, 224, 282
AfaI	GTAC	4 cut(s)	257, 347, 381, 709
AfiI	CCNNNNNNNGG	2 cut(s)	483, 518
AgsI	TTSAA	4 cut(s)	220, 448, 518, 705
AhdI	GACNNNNNGTC	1 cut(s)	605
AluBI	AGCT	8 cut(s)	155, 170, 238, 419, 460, 586, 628, 643
AluI	AGCT	8 cut(s)	155, 170, 238, 419, 460, 586, 628, 643
Alw21I	GWGCWC	3 cut(s)	240, 421, 462
AlwI	GGATC	1 cut(s)	385
AoxI	GGCC	2 cut(s)	474, 509
ApeKI	GCWGC	6 cut(s)	203, 434, 469, 504, 583, 640
ApoI	RAATTY	1 cut(s)	385
Asp718I	GGTACC	1 cut(s)	379
AspS9I	GGNCC	2 cut(s)	177, 599
AvaII	GGWCC	2 cut(s)	177, 599
BanI	GGYRCC	1 cut(s)	379
BanII	GRGCYC	3 cut(s)	240, 421, 462
Bbv12I	GWGCWC	3 cut(s)	240, 421, 462
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	6 cut(s)	190, 446, 481, 516, 595, 652
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BfaI	CTAG	2 cut(s)	191, 711
BfmI	CTRYAG	1 cut(s)	663
BglII	AGATCT	1 cut(s)	713
BisI	GCNGC	6 cut(s)	204, 435, 470, 505, 584, 641
BlsI	GCNGC	6 cut(s)	205, 436, 471, 506, 585, 642
BmcAI	AGTACT	1 cut(s)	709
Bme18I	GGWCC	2 cut(s)	177, 599
BmeRI	GACNNNNNGTC	1 cut(s)	605
BmgT120I	GGNCC	2 cut(s)	177, 599
BmiI	GGNNCC	1 cut(s)	381
BmsI	GCATC	1 cut(s)	565
BpmI	CTGGAG	1 cut(s)	615
Bpu10I	CCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	2 cut(s)	224, 662
BsaHI	GRCGYC	3 cut(s)	212, 224, 282
Bsc4I	CCNNNNNNNGG	2 cut(s)	483, 518
BseGI	GGATG	2 cut(s)	580, 649
BseLI	CCNNNNNNNGG	2 cut(s)	483, 518
BseMII	CTCAG	1 cut(s)	198
BseXI	GCAGC	6 cut(s)	190, 446, 481, 516, 595, 652
Bsh1236I	CGCG	1 cut(s)	323
BshFI	GGCC	2 cut(s)	476, 511
BshNI	GGYRCC	1 cut(s)	379
BsiHKAI	GWGCWC	3 cut(s)	240, 421, 462
BsiWI	CGTACG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	673
BslI	CCNNNNNNNGG	2 cut(s)	483, 518
BsmFI	GGGAC	1 cut(s)	673
BsmI	GAATGC	2 cut(s)	677, 745
BsnI	GGCC	2 cut(s)	476, 511
Bsp1286I	GDGCHC	3 cut(s)	240, 421, 462
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	4 cut(s)	145, 390, 713, 772
Bsp68I	TCGCGA	1 cut(s)	323
BspANI	GGCC	2 cut(s)	476, 511
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	323
BspLI	GGNNCC	1 cut(s)	381
BspMAI	CTGCAG	1 cut(s)	667
BspPI	GGATC	1 cut(s)	385
BspT107I	GGYRCC	1 cut(s)	379
BsrGI	TGTACA	1 cut(s)	345
BssMI	GATC	4 cut(s)	145, 390, 713, 772
BssNI	GRCGYC	3 cut(s)	212, 224, 282
Bst6I	CTCTTC	2 cut(s)	374, 706
BstACI	GRCGYC	3 cut(s)	212, 224, 282
BstAUI	TGTACA	1 cut(s)	345
BstC8I	GCNNGC	3 cut(s)	474, 509, 645
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	2 cut(s)	580, 649
BstFNI	CGCG	1 cut(s)	323
BstKTI	GATC	4 cut(s)	148, 393, 716, 775
BstMBI	GATC	4 cut(s)	145, 390, 713, 772
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 251, 466, 625
BstSFI	CTRYAG	1 cut(s)	663
BstUI	CGCG	1 cut(s)	323
BstV1I	GCAGC	6 cut(s)	190, 446, 481, 516, 595, 652
BstX2I	RGATCY	1 cut(s)	713
BstYI	RGATCY	1 cut(s)	713
BsuRI	GGCC	2 cut(s)	476, 511
BtsCI	GGATG	2 cut(s)	580, 649
BtuMI	TCGCGA	1 cut(s)	323
Cac8I	GCNNGC	3 cut(s)	474, 509, 645
Cfr13I	GGNCC	2 cut(s)	177, 599
CseI	GACGC	2 cut(s)	201, 213
Csp6I	GTAC	4 cut(s)	256, 346, 380, 708
CviAII	CATG	2 cut(s)	571, 636
CviQI	GTAC	4 cut(s)	256, 346, 380, 708
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	4 cut(s)	147, 392, 715, 774
DpnII	GATC	4 cut(s)	145, 390, 713, 772
DraI	TTTAAA	1 cut(s)	315
DriI	GACNNNNNGTC	1 cut(s)	605
Eam1104I	CTCTTC	2 cut(s)	374, 706
Eam1105I	GACNNNNNGTC	1 cut(s)	605
EarI	CTCTTC	2 cut(s)	374, 706
Ecl136II	GAGCTC	3 cut(s)	238, 419, 460
Eco24I	GRGCYC	3 cut(s)	240, 421, 462
Eco47I	GGWCC	2 cut(s)	177, 599
Eco53kI	GAGCTC	3 cut(s)	238, 419, 460
Eco57I	CTGAAG	2 cut(s)	348, 707
EcoICRI	GAGCTC	3 cut(s)	238, 419, 460
EcoT38I	GRGCYC	3 cut(s)	240, 421, 462
FaeI	CATG	2 cut(s)	574, 639
FaiI	YATR	6 cut(s)	106, 164, 182, 572, 637, 728
FaqI	GGGAC	1 cut(s)	673
FatI	CATG	2 cut(s)	570, 635
FblI	GTMKAC	1 cut(s)	95
Fnu4HI	GCNGC	6 cut(s)	204, 435, 470, 505, 584, 641
FokI	GGATG	2 cut(s)	587, 636
FriOI	GRGCYC	3 cut(s)	240, 421, 462
Fsp4HI	GCNGC	6 cut(s)	204, 435, 470, 505, 584, 641
FspBI	CTAG	2 cut(s)	191, 711
GluI	GCNGC	6 cut(s)	204, 435, 470, 505, 584, 641
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	2 cut(s)	476, 511
HgaI	GACGC	2 cut(s)	201, 213
Hin1I	GRCGYC	3 cut(s)	212, 224, 282
Hin1II	CATG	2 cut(s)	574, 639
HinfI	GANTC	5 cut(s)	33, 130, 429, 464, 499
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	2 cut(s)	40, 457
Hpy188III	TCNNGA	6 cut(s)	263, 322, 524, 535, 594, 776
Hpy8I	GTNNAC	1 cut(s)	96
Hpy99I	CGWCG	2 cut(s)	200, 287
HpyAV	CCTTC	6 cut(s)	226, 323, 442, 512, 556, 682
HpyCH4IV	ACGT	2 cut(s)	117, 282
HpyCH4V	TGCA	4 cut(s)	583, 635, 665, 743
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 251, 466, 625
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	2 cut(s)	117, 282
Hsp92I	GRCGYC	3 cut(s)	212, 224, 282
Hsp92II	CATG	2 cut(s)	574, 639
KpnI	GGTACC	1 cut(s)	383
Kzo9I	GATC	4 cut(s)	145, 390, 713, 772
LmnI	GCTCC	2 cut(s)	416, 457
LpnPI	CCDG	7 cut(s)	153, 248, 414, 458, 493, 520, 579
Lsp1109I	GCAGC	6 cut(s)	190, 446, 481, 516, 595, 652
LweI	GCATC	1 cut(s)	565
MaeI	CTAG	2 cut(s)	191, 711
MaeII	ACGT	2 cut(s)	117, 282
MaeIII	GTNAC	1 cut(s)	776
MalI	GATC	4 cut(s)	147, 392, 715, 774
MboI	GATC	4 cut(s)	145, 390, 713, 772
MboII	GAAGA	5 cut(s)	155, 283, 361, 693, 782
MflI	RGATCY	1 cut(s)	713
MhlI	GDGCHC	3 cut(s)	240, 421, 462
MluCI	AATT	4 cut(s)	60, 353, 385, 442
MmeI	TCCRAC	2 cut(s)	435, 700
MnlI	CCTC	9 cut(s)	23, 193, 202, 373, 559, 590, 661, 686, 724
MseI	TTAA	7 cut(s)	63, 122, 248, 314, 482, 555, 588
Mva1269I	GAATGC	2 cut(s)	677, 745
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	4 cut(s)	209, 251, 466, 625
NdeII	GATC	4 cut(s)	145, 390, 713, 772
NlaIII	CATG	2 cut(s)	574, 639
NlaIV	GGNNCC	1 cut(s)	381
NmuCI	GTSAC	1 cut(s)	776
NruI	TCGCGA	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PctI	GAATGC	2 cut(s)	677, 745
PfeI	GAWTC	5 cut(s)	33, 130, 429, 464, 499
Pfl23II	CGTACG	1 cut(s)	255
PkrI	GCNGC	6 cut(s)	205, 436, 471, 506, 585, 642
Psp124BI	GAGCTC	3 cut(s)	240, 421, 462
PspLI	CGTACG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	2 cut(s)	177, 599
PstI	CTGCAG	1 cut(s)	667
PsuI	RGATCY	1 cut(s)	713
RruI	TCGCGA	1 cut(s)	323
RsaI	GTAC	4 cut(s)	257, 347, 381, 709
RsaNI	GTAC	4 cut(s)	256, 346, 380, 708
SacI	GAGCTC	3 cut(s)	240, 421, 462
SaqAI	TTAA	7 cut(s)	63, 122, 248, 314, 482, 555, 588
SatI	GCNGC	6 cut(s)	204, 435, 470, 505, 584, 641
Sau3AI	GATC	4 cut(s)	145, 390, 713, 772
Sau96I	GGNCC	2 cut(s)	177, 599
ScaI	AGTACT	1 cut(s)	709
SduI	GDGCHC	3 cut(s)	240, 421, 462
SfaNI	GCATC	1 cut(s)	565
SfcI	CTRYAG	1 cut(s)	663
SinI	GGWCC	2 cut(s)	177, 599
SmlI	CTYRAG	2 cut(s)	239, 677
SmoI	CTYRAG	2 cut(s)	239, 677
Sse9I	AATT	4 cut(s)	60, 353, 385, 442
SspMI	CTAG	2 cut(s)	191, 711
SstI	GAGCTC	3 cut(s)	240, 421, 462
TaiI	ACGT	2 cut(s)	120, 285
TaqI	TCGA	9 cut(s)	22, 31, 389, 408, 421, 427, 462, 497, 523
TasI	AATT	4 cut(s)	60, 353, 385, 442
TatI	WGTACW	2 cut(s)	345, 707
TfiI	GAWTC	5 cut(s)	33, 130, 429, 464, 499
Tru1I	TTAA	7 cut(s)	63, 122, 248, 314, 482, 555, 588
Tru9I	TTAA	7 cut(s)	63, 122, 248, 314, 482, 555, 588
TseFI	GTSAC	1 cut(s)	776
TseI	GCWGC	6 cut(s)	203, 434, 469, 504, 583, 640
Tsp45I	GTSAC	1 cut(s)	776
VpaK11BI	GGWCC	2 cut(s)	177, 599
XapI	RAATTY	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	95
XspI	CTAG	2 cut(s)	191, 711
ZraI	GACGTC	1 cut(s)	283
ZrmI	AGTACT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.