Rmu_sc0037239.1_g000001

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0037239.1
Physical Location & Seq
Reverse (-)
1 .. 508
508 bp
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UTR
Exon/CDS
Intron
Rmu_sc0037239.1_g000001.1.cds

Sequence Viewer

Length: 307 bp
atgggtgagtgtggctgtccagcctatcctgatttctgtcttggtggagcaggtctagataaagtctgggatgtaaagccattacttaatggaaatgagatcatggatgctttgcagcttaaatctggaggaccacttgtcagtaaatggcaaaggaagctacttgcatggcagcttgctcatcctttggggactgcagaggaatgcctcaagtggctgaaggaaacacactcttcaagtactagatctgccggagatatggaggaattgaatggacccaacaacaagaaaagtaaaactgaagatt

Protein Analysis

102

Amino Acids

11.14

Weight (kDa)

5.65

Isoelectric Point (pI)

41.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis pycom05g03810 pycom10g03770
rosa_chinensis RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 41
AcuI CTGAAG 1 cut(s) 239
AfaI GTAC 1 cut(s) 241
AgsI TTSAA 2 cut(s) 237, 271
AhdI GACNNNNNGTC 1 cut(s) 137
AluBI AGCT 3 cut(s) 118, 160, 175
AluI AGCT 3 cut(s) 118, 160, 175
ApeKI GCWGC 2 cut(s) 115, 172
AspS9I GGNCC 2 cut(s) 131, 275
AsuHPI GGTGA 1 cut(s) 17
AvaII GGWCC 2 cut(s) 131, 275
BbvI GCAGC 2 cut(s) 127, 184
BfaI CTAG 2 cut(s) 56, 243
BfmI CTRYAG 1 cut(s) 195
BfuAI ACCTGC 1 cut(s) 41
BglII AGATCT 1 cut(s) 245
BisI GCNGC 2 cut(s) 116, 173
BlsI GCNGC 2 cut(s) 117, 174
BmcAI AGTACT 1 cut(s) 241
Bme18I GGWCC 2 cut(s) 131, 275
BmeRI GACNNNNNGTC 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 131, 275
BmiI GGNNCC 1 cut(s) 277
BmsI GCATC 1 cut(s) 97
BpmI CTGGAG 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 194
BseGI GGATG 3 cut(s) 76, 112, 181
BseXI GCAGC 2 cut(s) 127, 184
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 205
BsmI GAATGC 1 cut(s) 209
Bsp143I GATC 2 cut(s) 99, 245
BspLI GGNNCC 1 cut(s) 277
BspMAI CTGCAG 1 cut(s) 199
BspMI ACCTGC 1 cut(s) 41
BssMI GATC 2 cut(s) 99, 245
Bst6I CTCTTC 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 177
BstF5I GGATG 3 cut(s) 76, 112, 181
BstKTI GATC 2 cut(s) 102, 248
BstMBI GATC 2 cut(s) 99, 245
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstSFI CTRYAG 1 cut(s) 195
BstV1I GCAGC 2 cut(s) 127, 184
BstX2I RGATCY 1 cut(s) 245
BstYI RGATCY 1 cut(s) 245
BtsCI GGATG 3 cut(s) 76, 112, 181
BveI ACCTGC 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 177
Cfr13I GGNCC 2 cut(s) 131, 275
Csp6I GTAC 1 cut(s) 240
CviAII CATG 2 cut(s) 103, 168
CviJI RGCY 7 cut(s) 15, 23, 79, 118, 160, 175, 217
CviKI_1 RGCY 7 cut(s) 15, 23, 79, 118, 160, 175, 217
CviQI GTAC 1 cut(s) 240
DpnI GATC 2 cut(s) 101, 247
DpnII GATC 2 cut(s) 99, 245
DriI GACNNNNNGTC 1 cut(s) 137
Eam1104I CTCTTC 1 cut(s) 238
Eam1105I GACNNNNNGTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 238
Eco47I GGWCC 2 cut(s) 131, 275
Eco57I CTGAAG 1 cut(s) 239
FaeI CATG 2 cut(s) 106, 171
FaiI YATR 3 cut(s) 104, 169, 260
FaqI GGGAC 1 cut(s) 205
FatI CATG 2 cut(s) 102, 167
Fnu4HI GCNGC 2 cut(s) 116, 173
FokI GGATG 3 cut(s) 83, 119, 168
Fsp4HI GCNGC 2 cut(s) 116, 173
FspBI CTAG 2 cut(s) 56, 243
GluI GCNGC 2 cut(s) 116, 173
GsuI CTGGAG 1 cut(s) 147
HapII CCGG 1 cut(s) 252
Hin1II CATG 2 cut(s) 106, 171
HpaII CCGG 1 cut(s) 252
HphI GGTGA 1 cut(s) 17
Hpy188III TCNNGA 3 cut(s) 29, 56, 126
HpyAV CCTTC 1 cut(s) 214
HpyCH4V TGCA 3 cut(s) 115, 167, 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
Hsp92II CATG 2 cut(s) 106, 171
Kzo9I GATC 2 cut(s) 99, 245
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 6 cut(s) 33, 36, 42, 52, 111, 265
Lsp1109I GCAGC 2 cut(s) 127, 184
LweI GCATC 1 cut(s) 97
MaeI CTAG 2 cut(s) 56, 243
MalI GATC 2 cut(s) 101, 247
MboI GATC 2 cut(s) 99, 245
MboII GAAGA 1 cut(s) 225
MflI RGATCY 1 cut(s) 245
MluCI AATT 1 cut(s) 266
MnlI CCTC 4 cut(s) 122, 193, 218, 256
MseI TTAA 2 cut(s) 87, 120
MspI CCGG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 157
NdeII GATC 2 cut(s) 99, 245
NlaIII CATG 2 cut(s) 106, 171
NlaIV GGNNCC 1 cut(s) 277
PctI GAATGC 1 cut(s) 209
PkrI GCNGC 2 cut(s) 117, 174
PspN4I GGNNCC 1 cut(s) 277
PspPI GGNCC 2 cut(s) 131, 275
PstI CTGCAG 1 cut(s) 199
PsuI RGATCY 1 cut(s) 245
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SaqAI TTAA 2 cut(s) 87, 120
SatI GCNGC 2 cut(s) 116, 173
Sau3AI GATC 2 cut(s) 99, 245
Sau96I GGNCC 2 cut(s) 131, 275
ScaI AGTACT 1 cut(s) 241
SetI ASST 4 cut(s) 55, 120, 162, 177
SfaNI GCATC 1 cut(s) 97
SfcI CTRYAG 1 cut(s) 195
SinI GGWCC 2 cut(s) 131, 275
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 1 cut(s) 266
SspMI CTAG 2 cut(s) 56, 243
TasI AATT 1 cut(s) 266
TatI WGTACW 1 cut(s) 239
Tru1I TTAA 2 cut(s) 87, 120
Tru9I TTAA 2 cut(s) 87, 120
TseI GCWGC 2 cut(s) 115, 172
VpaK11BI GGWCC 2 cut(s) 131, 275
XbaI TCTAGA 1 cut(s) 55
XspI CTAG 2 cut(s) 56, 243
ZrmI AGTACT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.