Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000288

Physical Location & Seq

Genomic Coordinates Reverse (-)

38675186 .. 38676581

Gene Structure 1396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G017150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAAATTGAAGAGAAGATCTTTGAAAGGCTGCTTAGAACGCTACACCATTATGGACTTAAGACTGAGCTTCATGTCCAGGTGGATGGTCCGTGATAAGCTTCTAGGAAAAAAATTCAAGGACATCGATATTGCTTTGGAAAATATGATGGGCAGCAAATTTGTTGAGAAGGTGAGAGACTACTTGTTGTCTATGGGGGAAGAGGTTCAAGGAATCGCTATCATTCCAAGCAATCCCGATCAATCAAAACATTTGGAAATGGCGAGGATGTGCATCTTAAATGTATGGGTTGATTTTGTGAACTTACGCTGTGAAGAGTACAGTGATGATAGCCGCATTCCTGCTATGACTAAGTTAGAAAATTTCGTACACGCGGGGAGCAAAATTTTCCCACTTTACTTCACTCACTCACTCTCTCTCTCTCGCCCTTCCCCGAAACCCTATCCCTCTCTTCCTCTCTCGCCCTCTCCCCCCCCCTGTCCCAATCTTTGTGGATCATCTCGAAGGTGCAGCCTGGTGTTGACTCGTCAGAGGAAGGCGAAGAAGATGGTGACTACGGTGAGCCCACTCCGGTGGTTGGAGATCGTGACGGAGGAGAGAGTCCTCCAGATCCACTTTCTCTCTCCTCCACGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

212

Amino Acids

24.51

Weight (kDa)

9.69

Isoelectric Point (pI)

61.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PolyA_pol	PF01743	29 - 109	4.9e-09	Poly A polymerase head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca	FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica	MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica	Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis	pycom05g03810 pycom10g03770
rosa_chinensis	RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata	RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora	Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii	Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa	Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha	Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana	Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	374
AciI	CCGC	2 cut(s)	334, 374
AclWI	GGATC	2 cut(s)	502, 604
AcsI	RAATTY	4 cut(s)	113, 158, 361, 384
AfaI	GTAC	2 cut(s)	320, 369
AfiI	CCNNNNNNNGG	1 cut(s)	577
AflII	CTTAAG	1 cut(s)	58
AgsI	TTSAA	4 cut(s)	10, 25, 118, 209
AjnI	CCWGG	2 cut(s)	77, 513
AleI	CACNNNNGTG	1 cut(s)	571
AluBI	AGCT	2 cut(s)	69, 100
AluI	AGCT	2 cut(s)	69, 100
Alw26I	GTCTC	1 cut(s)	171
AlwI	GGATC	2 cut(s)	502, 604
ApeKI	GCWGC	3 cut(s)	30, 153, 510
ApoI	RAATTY	4 cut(s)	113, 158, 361, 384
Asp700I	GAANNNNTTC	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	3 cut(s)	184, 562, 571
AvaII	GGWCC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	566
BbvI	GCAGC	3 cut(s)	17, 165, 522
BccI	CCATC	3 cut(s)	79, 142, 541
BciT130I	CCWGG	2 cut(s)	79, 515
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	1 cut(s)	104
BfrI	CTTAAG	1 cut(s)	58
BglII	AGATCT	1 cut(s)	17
BisI	GCNGC	4 cut(s)	31, 154, 334, 511
BlsI	GCNGC	4 cut(s)	32, 155, 335, 512
Bme1390I	CCNGG	2 cut(s)	79, 515
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	88
BmrFI	CCNGG	2 cut(s)	79, 515
BmsI	GCATC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	590
Bsa29I	ATCGAT	1 cut(s)	126
BsaBI	GATNNNNATC	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	629
BsaWI	WCCGGW	1 cut(s)	570
Bsc4I	CCNNNNNNNGG	1 cut(s)	577
Bse8I	GATNNNNATC	1 cut(s)	272
BseBI	CCWGG	2 cut(s)	79, 515
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	629
BseGI	GGATG	2 cut(s)	90, 273
BseJI	GATNNNNATC	1 cut(s)	272
BseLI	CCNNNNNNNGG	1 cut(s)	577
BseMII	CTCAG	1 cut(s)	56
BseRI	GAGGAG	2 cut(s)	608, 615
BseXI	GCAGC	3 cut(s)	17, 165, 522
BsgI	GTGCAG	1 cut(s)	529
Bsh1236I	CGCG	1 cut(s)	374
BshVI	ATCGAT	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	571
BslFI	GGGAC	1 cut(s)	465
BslI	CCNNNNNNNGG	1 cut(s)	577
BsmAI	GTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	465
BsmI	GAATGC	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	566
Bsp143I	GATC	5 cut(s)	17, 238, 494, 582, 609
BspACI	CCGC	2 cut(s)	334, 374
BspCNI	CTCAG	1 cut(s)	57
BspDI	ATCGAT	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	374
BspPI	GGATC	2 cut(s)	502, 604
BspTI	CTTAAG	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	629
BssMI	GATC	5 cut(s)	17, 238, 494, 582, 609
Bst2UI	CCWGG	2 cut(s)	79, 515
Bst4CI	ACNGT	2 cut(s)	323, 559
Bst6I	CTCTTC	4 cut(s)	5, 195, 309, 456
BstAFI	CTTAAG	1 cut(s)	58
BstDEI	CTNAG	3 cut(s)	34, 65, 351
BstDSI	CCRYGG	1 cut(s)	629
BstF5I	GGATG	2 cut(s)	90, 273
BstFNI	CGCG	1 cut(s)	374
BstKTI	GATC	5 cut(s)	20, 241, 497, 585, 612
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	5 cut(s)	17, 238, 494, 582, 609
BstMWI	GCNNNNNNNGC	1 cut(s)	39
BstNI	CCWGG	2 cut(s)	79, 515
BstSCI	CCNGG	2 cut(s)	77, 513
BstUI	CGCG	1 cut(s)	374
BstV1I	GCAGC	3 cut(s)	17, 165, 522
BstX2I	RGATCY	2 cut(s)	17, 609
BstXI	CCANNNNNNTGG	2 cut(s)	85, 573
BstYI	RGATCY	2 cut(s)	17, 609
Bsu15I	ATCGAT	1 cut(s)	126
BsuTUI	ATCGAT	1 cut(s)	126
BtgI	CCRYGG	1 cut(s)	629
BtsCI	GGATG	2 cut(s)	90, 273
BtsIMutI	CAGTG	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	88
ClaI	ATCGAT	1 cut(s)	126
Csp6I	GTAC	2 cut(s)	319, 368
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	6 cut(s)	30, 69, 100, 333, 513, 564
CviKI_1	RGCY	6 cut(s)	30, 69, 100, 333, 513, 564
CviQI	GTAC	2 cut(s)	319, 368
DdeI	CTNAG	3 cut(s)	34, 65, 351
DpnI	GATC	5 cut(s)	19, 240, 496, 584, 611
DpnII	GATC	5 cut(s)	17, 238, 494, 582, 609
Eam1104I	CTCTTC	4 cut(s)	5, 195, 309, 456
EarI	CTCTTC	4 cut(s)	5, 195, 309, 456
Eco24I	GRGCYC	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	88
EcoRII	CCWGG	2 cut(s)	77, 513
EcoT38I	GRGCYC	1 cut(s)	566
FaeI	CATG	1 cut(s)	76
FaiI	YATR	6 cut(s)	53, 74, 146, 194, 286, 347
FaqI	GGGAC	1 cut(s)	465
FatI	CATG	1 cut(s)	72
FauI	CCCGC	1 cut(s)	367
Fnu4HI	GCNGC	4 cut(s)	31, 154, 334, 511
FokI	GGATG	2 cut(s)	97, 280
FriOI	GRGCYC	1 cut(s)	566
Fsp4HI	GCNGC	4 cut(s)	31, 154, 334, 511
FspBI	CTAG	1 cut(s)	104
GluI	GCNGC	4 cut(s)	31, 154, 334, 511
GsuI	CTGGAG	1 cut(s)	590
HapII	CCGG	1 cut(s)	571
Hin1II	CATG	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	522
HindII	GTYRAC	1 cut(s)	522
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	3 cut(s)	213, 523, 600
HpaII	CCGG	1 cut(s)	571
HphI	GGTGA	3 cut(s)	184, 562, 571
Hpy166II	GTNNAC	3 cut(s)	301, 370, 522
Hpy188I	TCNGA	1 cut(s)	531
Hpy188III	TCNNGA	4 cut(s)	236, 501, 586, 607
Hpy8I	GTNNAC	3 cut(s)	301, 370, 522
HpyAV	CCTTC	4 cut(s)	163, 438, 498, 529
HpyCH4III	ACNGT	2 cut(s)	323, 559
HpyCH4V	TGCA	2 cut(s)	273, 510
HpyF10VI	GCNNNNNNNGC	1 cut(s)	39
HpyF3I	CTNAG	3 cut(s)	34, 65, 351
Hsp92II	CATG	1 cut(s)	76
Kzo9I	GATC	5 cut(s)	17, 238, 494, 582, 609
LmnI	GCTCC	1 cut(s)	378
LpnPI	CCDG	8 cut(s)	64, 91, 354, 490, 500, 527, 584, 620
Lsp1109I	GCAGC	3 cut(s)	17, 165, 522
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	1 cut(s)	104
MaeIII	GTNAC	2 cut(s)	550, 586
MalI	GATC	5 cut(s)	19, 240, 496, 584, 611
MboI	GATC	5 cut(s)	17, 238, 494, 582, 609
MboII	GAAGA	7 cut(s)	22, 27, 212, 326, 443, 553, 556
MflI	RGATCY	2 cut(s)	17, 609
MhlI	GDGCHC	1 cut(s)	566
MluCI	AATT	5 cut(s)	5, 113, 158, 361, 384
MlyI	GAGTC	2 cut(s)	517, 609
MmeI	TCCRAC	1 cut(s)	558
MnlI	CCTC	9 cut(s)	196, 258, 457, 465, 475, 525, 586, 614, 636
MroXI	GAANNNNTTC	1 cut(s)	204
MseI	TTAA	2 cut(s)	59, 278
MslI	CAYNNNNRTG	2 cut(s)	50, 571
MspCI	CTTAAG	1 cut(s)	58
MspI	CCGG	1 cut(s)	571
MspR9I	CCNGG	2 cut(s)	79, 515
Mva1269I	GAATGC	1 cut(s)	336
MvaI	CCWGG	2 cut(s)	79, 515
MvnI	CGCG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	39
NdeII	GATC	5 cut(s)	17, 238, 494, 582, 609
NlaIII	CATG	1 cut(s)	76
NmuCI	GTSAC	2 cut(s)	550, 586
OliI	CACNNNNGTG	1 cut(s)	571
PctI	GAATGC	1 cut(s)	336
PdmI	GAANNNNTTC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	213
PkrI	GCNGC	4 cut(s)	32, 155, 335, 512
PleI	GAGTC	2 cut(s)	517, 608
PpsI	GAGTC	2 cut(s)	517, 608
Psp6I	CCWGG	2 cut(s)	77, 513
PspGI	CCWGG	2 cut(s)	77, 513
PspPI	GGNCC	1 cut(s)	88
PsuI	RGATCY	2 cut(s)	17, 609
RsaI	GTAC	2 cut(s)	320, 369
RsaNI	GTAC	2 cut(s)	319, 368
RseI	CAYNNNNRTG	2 cut(s)	50, 571
SaqAI	TTAA	2 cut(s)	59, 278
SatI	GCNGC	4 cut(s)	31, 154, 334, 511
Sau3AI	GATC	5 cut(s)	17, 238, 494, 582, 609
Sau96I	GGNCC	1 cut(s)	88
SchI	GAGTC	2 cut(s)	517, 609
ScrFI	CCNGG	2 cut(s)	79, 515
SduI	GDGCHC	1 cut(s)	566
SetI	ASST	6 cut(s)	71, 83, 102, 174, 207, 509
SfaNI	GCATC	1 cut(s)	282
SinI	GGWCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	2 cut(s)	50, 571
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	5 cut(s)	5, 113, 158, 361, 384
SsiI	CCGC	2 cut(s)	334, 374
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	2 cut(s)	77, 513
TaaI	ACNGT	2 cut(s)	323, 559
TaqI	TCGA	2 cut(s)	126, 502
TasI	AATT	5 cut(s)	5, 113, 158, 361, 384
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	1 cut(s)	336
TfiI	GAWTC	1 cut(s)	213
Tru1I	TTAA	2 cut(s)	59, 278
Tru9I	TTAA	2 cut(s)	59, 278
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	2 cut(s)	550, 586
TseI	GCWGC	3 cut(s)	30, 153, 510
Tsp45I	GTSAC	2 cut(s)	550, 586
TspDTI	ATGAA	2 cut(s)	17, 61
TspGWI	ACGGA	2 cut(s)	80, 605
TspRI	CASTG	1 cut(s)	328
Vha464I	CTTAAG	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	88
XapI	RAATTY	4 cut(s)	113, 158, 361, 384
XmnI	GAANNNNTTC	1 cut(s)	204
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.