Rh7BG298000

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
28266760 .. 28268380
1621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG298000.1

Sequence Viewer

Length: 1218 bp
ATGGAAACGGCGAGGCTGCGCATATTTGGGACATGGGTTGATTTTGTGAACTTACGTTGTGAAAAGTACAGTTGCAGTTGCCGATTTCCTACCATGCAAAAATATGGCACACCGGAACAGGATGCAATGAGAAGGGATCTAACGATCAATAGTTTGTTCTACAATATCAATACCAAATCAGTTGAAGATTGGACCAACAGAGGCATCAAAGATCTAAAATTCGGGAATATTGCGACTCCTTTGTCACCAAGGGAAACTATTATGGAGGATCCAGTGCGTGGTCTGCGAGCTATTCGTATTGGCACAAGGTATAGATTCACACTAGTTGAACAGCTAAAGGAAGCTGCTGCCAGTGATGAAGTGAAGGCAGCTCTTTCAGCTAAAGTTAGCAGAGAGCGAATTGGAGCTGAAATTGATCTCATGATATCTGGAGACCAACCTGTCCAAGCTATGACTTTACTGTGCGACTTCAATTGGTTTTGGTATGTGTTCCGTCTTCATCCTCAGTGTGAGCCGCCATCAGACAGGGCTTGTGTCACCTACTTGGAGTCTATATGTAACCTTATTGGGGTAATTGGGCCGTCTACATTTACTGATGAACAGAGAAGGATCTCCTTTTATGCTGCTATGTTCCTCCCACTTAGGACGACCACGTACAAAGATGAGAGAGTAGAAGAGATTCCTGTCGTGAATTTCATTTTCAGATACTCACTTAAGAGTAAAGTCAGCGATGCAGAAACTGTTATAAAGATACACAATGCAGTGGAAAAATTCTTGCCTTTGCTTCCGCACTTTGGATCCAGTGGATGTGGGGTGCAACTCCTCGCTGAAGATGATATGGGAACCAGAGAGTATGTTGATGATCTTTCTGCTACTTCAAAAGAATCACAACTCAGAGTACTGATGGGATTTCTTCTACGAGAAATTAAAGATTTTTGGACAGTTGCATTGCTGCTGTGTTGTTCAGAAGATCCTTTGAACAAGAACCTCACATTAGAGGATCGAACAGCTTTGTTTAGAAAAGTCCAAAGCGCCATAATTGATGATCTAGGTCTTGACAAAGTCTGGGATGTAAAGCCATTACTCAGGGGAACGGATATTATTAAACATCTGGGCCTTAAATCTGGAGGACCAGTTGTCAGTGAATGGAAACGGAAAGTATTTGCATGGCGACTCGCTCATCCTTCAGGGACTAAAGAGGAATGCAGAGATTGTTAG

Protein Analysis

405

Amino Acids

46.28

Weight (kDa)

6.95

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PolyA_pol PF01743 1 - 77 1.4e-13 Poly A polymerase head domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis pycom05g03810 pycom10g03770
rosa_chinensis RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 746
AasI GACNNNNNNGTC 2 cut(s) 241, 440
Acc16I TGCGCA 1 cut(s) 20
AccB7I CCANNNNNTGG 1 cut(s) 278
AccI GTMKAC 1 cut(s) 584
AciI CCGC 2 cut(s) 515, 788
AclWI GGATC 8 cut(s) 144, 263, 276, 617, 792, 805, 965, 1008
AcsI RAATTY 3 cut(s) 218, 691, 770
AcuI CTGAAG 2 cut(s) 849, 1170
AfaI GTAC 3 cut(s) 68, 656, 900
AfiI CCNNNNNNNGG 3 cut(s) 278, 568, 794
AflII CTTAAG 1 cut(s) 713
AgsI TTSAA 5 cut(s) 185, 329, 472, 879, 979
AhdI GACNNNNNGTC 1 cut(s) 1136
AhlI ACTAGT 1 cut(s) 322
AluBI AGCT 8 cut(s) 290, 334, 344, 371, 380, 407, 449, 1010
AluI AGCT 8 cut(s) 290, 334, 344, 371, 380, 407, 449, 1010
Alw26I GTCTC 1 cut(s) 426
AlwI GGATC 8 cut(s) 144, 263, 276, 617, 792, 805, 965, 1008
AlwNI CAGNNNCTG 1 cut(s) 740
AoxI GGCC 2 cut(s) 578, 1114
ApeKI GCWGC 6 cut(s) 16, 344, 347, 368, 623, 952
ApoI RAATTY 3 cut(s) 218, 691, 770
Asp700I GAANNNNTTC 1 cut(s) 678
AspLEI GCGC 2 cut(s) 21, 1034
AspS9I GGNCC 4 cut(s) 192, 578, 1114, 1130
AsuHPI GGTGA 2 cut(s) 237, 529
AvaII GGWCC 2 cut(s) 192, 1130
BamHI GGATCC 2 cut(s) 268, 797
BbsI GAAGAC 1 cut(s) 488
BbvI GCAGC 6 cut(s) 3, 331, 334, 380, 610, 939
BccI CCATC 2 cut(s) 526, 898
BceAI ACGGC 2 cut(s) 24, 565
BcoDI GTCTC 1 cut(s) 426
BcuI ACTAGT 1 cut(s) 322
BfaI CTAG 2 cut(s) 323, 1049
BfoI RGCGCY 1 cut(s) 1035
BfrI CTTAAG 1 cut(s) 713
BglII AGATCT 1 cut(s) 211
BisI GCNGC 7 cut(s) 17, 345, 348, 369, 515, 624, 953
BlsI GCNGC 7 cut(s) 18, 346, 349, 370, 516, 625, 954
BmcAI AGTACT 1 cut(s) 900
Bme18I GGWCC 2 cut(s) 192, 1130
BmeRI GACNNNNNGTC 1 cut(s) 1136
BmgT120I GGNCC 4 cut(s) 192, 578, 1114, 1130
BmiI GGNNCC 3 cut(s) 270, 799, 844
BmsI GCATC 3 cut(s) 112, 213, 721
BpiI GAAGAC 1 cut(s) 488
BpmI CTGGAG 2 cut(s) 450, 1146
BsaAI YACGTR 1 cut(s) 654
BsaI GGTCTC 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 248
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 1119, 1149
Bsc4I CCNNNNNNNGG 3 cut(s) 278, 568, 794
Bse1I ACTGG 4 cut(s) 272, 351, 801, 1133
Bse3DI GCAATG 2 cut(s) 132, 947
BseDI CCNNGG 1 cut(s) 248
BseGI GGATG 5 cut(s) 127, 499, 812, 1075, 1180
BseLI CCNNNNNNNGG 3 cut(s) 278, 568, 794
BseMI GCAATG 2 cut(s) 132, 947
BseMII CTCAG 3 cut(s) 518, 907, 1099
BseNI ACTGG 4 cut(s) 272, 351, 801, 1133
BseRI GAGGAG 1 cut(s) 812
BseXI GCAGC 6 cut(s) 3, 331, 334, 380, 610, 939
BshFI GGCC 2 cut(s) 580, 1116
BsiSI CCGG 1 cut(s) 113
BslFI GGGAC 2 cut(s) 43, 1204
BslI CCNNNNNNNGG 3 cut(s) 278, 568, 794
BsmAI GTCTC 1 cut(s) 426
BsmFI GGGAC 2 cut(s) 43, 1204
BsmI GAATGC 1 cut(s) 1208
BsnI GGCC 2 cut(s) 580, 1116
Bso31I GGTCTC 1 cut(s) 426
BspACI CCGC 2 cut(s) 515, 788
BspANI GGCC 2 cut(s) 580, 1116
BspCNI CTCAG 3 cut(s) 517, 906, 1098
BspHI TCATGA 1 cut(s) 420
BspLI GGNNCC 3 cut(s) 270, 799, 844
BspPI GGATC 8 cut(s) 144, 263, 276, 617, 792, 805, 965, 1008
BspTI CTTAAG 1 cut(s) 713
BspTNI GGTCTC 1 cut(s) 426
BsrDI GCAATG 2 cut(s) 132, 947
BsrI ACTGG 4 cut(s) 272, 351, 801, 1133
BssECI CCNNGG 1 cut(s) 248
BssT1I CCWWGG 1 cut(s) 248
Bst4CI ACNGT 4 cut(s) 71, 462, 742, 943
Bst6I CTCTTC 1 cut(s) 669
BstAFI CTTAAG 1 cut(s) 713
BstBAI YACGTR 1 cut(s) 654
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 4 cut(s) 504, 641, 893, 1085
BstF5I GGATG 5 cut(s) 127, 499, 812, 1075, 1180
BstH2I RGCGCY 1 cut(s) 1035
BstHHI GCGC 2 cut(s) 21, 1034
BstMAI GTCTC 1 cut(s) 426
BstMWI GCNNNNNNNGC 2 cut(s) 283, 377
BstV1I GCAGC 6 cut(s) 3, 331, 334, 380, 610, 939
BstV2I GAAGAC 1 cut(s) 488
BstX2I RGATCY 6 cut(s) 136, 211, 268, 609, 797, 970
BstYI RGATCY 6 cut(s) 136, 211, 268, 609, 797, 970
BsuRI GGCC 2 cut(s) 580, 1116
BtgZI GCGATG 1 cut(s) 744
BtsCI GGATG 5 cut(s) 127, 499, 812, 1075, 1180
BtsI GCAGTG 1 cut(s) 768
BtsIMutI CAGTG 6 cut(s) 279, 358, 512, 768, 808, 1147
Cac8I GCNNGC 1 cut(s) 288
CaiI CAGNNNCTG 1 cut(s) 740
CciI TCATGA 1 cut(s) 420
CfoI GCGC 2 cut(s) 21, 1034
Cfr13I GGNCC 4 cut(s) 192, 578, 1114, 1130
Csp6I GTAC 3 cut(s) 67, 655, 899
CviAII CATG 4 cut(s) 33, 94, 421, 1167
CviQI GTAC 3 cut(s) 67, 655, 899
DdeI CTNAG 4 cut(s) 504, 641, 893, 1085
DrdI GACNNNNNNGTC 2 cut(s) 241, 440
DriI GACNNNNNGTC 1 cut(s) 1136
DseDI GACNNNNNNGTC 2 cut(s) 241, 440
Eam1104I CTCTTC 1 cut(s) 669
Eam1105I GACNNNNNGTC 1 cut(s) 1136
EarI CTCTTC 1 cut(s) 669
Eco130I CCWWGG 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 426
Eco32I GATATC 1 cut(s) 426
Eco47I GGWCC 2 cut(s) 192, 1130
Eco57I CTGAAG 2 cut(s) 849, 1170
EcoRV GATATC 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 248
ErhI CCWWGG 1 cut(s) 248
FaeI CATG 4 cut(s) 36, 97, 424, 1170
FaqI GGGAC 2 cut(s) 43, 1204
FatI CATG 4 cut(s) 32, 93, 420, 1166
FblI GTMKAC 1 cut(s) 584
Fnu4HI GCNGC 7 cut(s) 17, 345, 348, 369, 515, 624, 953
FokI GGATG 5 cut(s) 134, 486, 819, 1082, 1167
Fsp4HI GCNGC 7 cut(s) 17, 345, 348, 369, 515, 624, 953
FspBI CTAG 2 cut(s) 323, 1049
FspI TGCGCA 1 cut(s) 20
GlaI GCGC 2 cut(s) 20, 1033
GluI GCNGC 7 cut(s) 17, 345, 348, 369, 515, 624, 953
GsuI CTGGAG 2 cut(s) 450, 1146
HaeII RGCGCY 1 cut(s) 1035
HaeIII GGCC 2 cut(s) 580, 1116
HapII CCGG 1 cut(s) 113
HhaI GCGC 2 cut(s) 21, 1034
Hin1II CATG 4 cut(s) 36, 97, 424, 1170
Hin6I GCGC 2 cut(s) 19, 1032
HinP1I GCGC 2 cut(s) 19, 1032
HinfI GANTC 6 cut(s) 235, 315, 548, 679, 884, 1173
HpaII CCGG 1 cut(s) 113
HphI GGTGA 2 cut(s) 237, 529
Hpy166II GTNNAC 2 cut(s) 49, 585
Hpy188I TCNGA 4 cut(s) 523, 704, 896, 967
Hpy188III TCNNGA 6 cut(s) 223, 421, 429, 688, 1055, 1125
Hpy8I GTNNAC 2 cut(s) 49, 585
HpyAV CCTTC 4 cut(s) 126, 358, 600, 1194
HpyCH4III ACNGT 4 cut(s) 71, 462, 742, 943
HpyCH4IV ACGT 2 cut(s) 55, 653
HpyCH4V TGCA 9 cut(s) 75, 97, 125, 734, 761, 817, 947, 1166, 1206
HpyF10VI GCNNNNNNNGC 2 cut(s) 283, 377
HpyF3I CTNAG 4 cut(s) 504, 641, 893, 1085
HpySE526I ACGT 2 cut(s) 55, 653
Hsp92II CATG 4 cut(s) 36, 97, 424, 1170
HspAI GCGC 2 cut(s) 19, 1032
LmnI GCTCC 1 cut(s) 404
Lsp1109I GCAGC 6 cut(s) 3, 331, 334, 380, 610, 939
LweI GCATC 3 cut(s) 112, 213, 721
MaeI CTAG 2 cut(s) 323, 1049
MaeII ACGT 2 cut(s) 55, 653
MaeIII GTNAC 3 cut(s) 243, 535, 557
MboII GAAGA 6 cut(s) 197, 488, 686, 842, 905, 980
MfeI CAATTG 1 cut(s) 472
MflI RGATCY 6 cut(s) 136, 211, 268, 609, 797, 970
MluCI AATT 9 cut(s) 218, 399, 411, 472, 573, 691, 770, 924, 1038
MlyI GAGTC 3 cut(s) 229, 557, 1167
MroXI GAANNNNTTC 1 cut(s) 678
MseI TTAA 4 cut(s) 714, 927, 1104, 1119
MspCI CTTAAG 1 cut(s) 713
MspI CCGG 1 cut(s) 113
MunI CAATTG 1 cut(s) 472
Mva1269I GAATGC 1 cut(s) 1208
MwoI GCNNNNNNNGC 2 cut(s) 283, 377
NlaIII CATG 4 cut(s) 36, 97, 424, 1170
NlaIV GGNNCC 3 cut(s) 270, 799, 844
NmuCI GTSAC 2 cut(s) 243, 535
NsbI TGCGCA 1 cut(s) 20
PagI TCATGA 1 cut(s) 420
PctI GAATGC 1 cut(s) 1208
PdmI GAANNNNTTC 1 cut(s) 678
PfeI GAWTC 3 cut(s) 315, 679, 884
PflFI GACNNNGTC 1 cut(s) 1061
PflMI CCANNNNNTGG 1 cut(s) 278
PkrI GCNGC 7 cut(s) 18, 346, 349, 370, 516, 625, 954
PleI GAGTC 3 cut(s) 229, 556, 1167
PpsI GAGTC 3 cut(s) 229, 556, 1167
Ppu21I YACGTR 1 cut(s) 654
PsiI TTATAA 1 cut(s) 746
PspN4I GGNNCC 3 cut(s) 270, 799, 844
PspPI GGNCC 4 cut(s) 192, 578, 1114, 1130
PstNI CAGNNNCTG 1 cut(s) 740
PsuI RGATCY 6 cut(s) 136, 211, 268, 609, 797, 970
PsyI GACNNNGTC 1 cut(s) 1061
RsaI GTAC 3 cut(s) 68, 656, 900
RsaNI GTAC 3 cut(s) 67, 655, 899
SaqAI TTAA 4 cut(s) 714, 927, 1104, 1119
SatI GCNGC 7 cut(s) 17, 345, 348, 369, 515, 624, 953
Sau96I GGNCC 4 cut(s) 192, 578, 1114, 1130
ScaI AGTACT 1 cut(s) 900
SchI GAGTC 3 cut(s) 229, 557, 1167
SfaNI GCATC 3 cut(s) 112, 213, 721
SinI GGWCC 2 cut(s) 192, 1130
SmlI CTYRAG 1 cut(s) 713
SmoI CTYRAG 1 cut(s) 713
SpeI ACTAGT 1 cut(s) 322
Sse9I AATT 9 cut(s) 218, 399, 411, 472, 573, 691, 770, 924, 1038
SsiI CCGC 2 cut(s) 515, 788
SspI AATATT 1 cut(s) 229
SspMI CTAG 2 cut(s) 323, 1049
StyI CCWWGG 1 cut(s) 248
TaaI ACNGT 4 cut(s) 71, 462, 742, 943
TaiI ACGT 2 cut(s) 58, 656
TaqI TCGA 1 cut(s) 1003
TasI AATT 9 cut(s) 218, 399, 411, 472, 573, 691, 770, 924, 1038
TatI WGTACW 2 cut(s) 66, 898
TauI GCSGC 1 cut(s) 517
TfiI GAWTC 3 cut(s) 315, 679, 884
Tru1I TTAA 4 cut(s) 714, 927, 1104, 1119
Tru9I TTAA 4 cut(s) 714, 927, 1104, 1119
TscAI CASTG 6 cut(s) 279, 358, 512, 768, 808, 1147
TseFI GTSAC 2 cut(s) 243, 535
TseI GCWGC 6 cut(s) 16, 344, 347, 368, 623, 952
Tsp45I GTSAC 2 cut(s) 243, 535
TspDTI ATGAA 4 cut(s) 372, 488, 612, 685
TspGWI ACGGA 3 cut(s) 482, 1109, 1168
TspRI CASTG 6 cut(s) 279, 358, 512, 768, 808, 1147
Tth111I GACNNNGTC 1 cut(s) 1061
Van91I CCANNNNNTGG 1 cut(s) 278
Vha464I CTTAAG 1 cut(s) 713
VpaK11BI GGWCC 2 cut(s) 192, 1130
XapI RAATTY 3 cut(s) 218, 691, 770
XmiI GTMKAC 1 cut(s) 584
XmnI GAANNNNTTC 1 cut(s) 678
XspI CTAG 2 cut(s) 323, 1049
ZrmI AGTACT 1 cut(s) 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.