Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000288

Physical Location & Seq

Genomic Coordinates Forward (+)

34785070 .. 34785664

Gene Structure 595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00242460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGATGTGGCGTGCAACTCCTCGCTGAAGCTGATTTGGGAACCAGAGAGTATGTTGATGATCTTTCTGCTACTTCAAAAAAATCACAAACTCAGAGTACTGATGGGATTTCTTCTACGAGAAATTAAAGATTTTTGGACAGTTGCATTGCTGCTTTGTTGTTCAGAAGATCCTTTGAACAAGAACCTCACATTAGAGGATCGAACAGCTTTGTTTAGAAAAGTCCAAAGCGCCATAATTGATGATCTAGGTCTTGACAAAGTCTGGGATGTAAAGCCATTACTCAGGGGAACGGATATTATTAAACATCTGGGCCTTAAATCTGGAGGACCAGTTGTCAGTGAATGGAAACGGAAGGTATTTGCATGGCGACTCGCTCATCCTTCAGGGACTAAAGAGGAATGCAGAGATTGGATGAAGAAAACATTCTTCAAGGGAAATTCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

149

Amino Acids

17.23

Weight (kDa)

9.25

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca	FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica	MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica	Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis	pycom05g03810 pycom10g03770
rosa_chinensis	RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata	RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora	Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii	Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa	Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha	Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana	Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	164, 207
AcsI	RAATTY	1 cut(s)	439
AcuI	CTGAAG	2 cut(s)	47, 369
AfaI	GTAC	1 cut(s)	99
AgsI	TTSAA	3 cut(s)	77, 178, 433
AhdI	GACNNNNNGTC	1 cut(s)	335
AluBI	AGCT	2 cut(s)	31, 209
AluI	AGCT	2 cut(s)	31, 209
AlwI	GGATC	2 cut(s)	164, 207
AoxI	GGCC	1 cut(s)	313
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	439
Asp700I	GAANNNNTTC	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	2 cut(s)	313, 329
AvaII	GGWCC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	138
BccI	CCATC	1 cut(s)	97
BfaI	CTAG	1 cut(s)	248
BfoI	RGCGCY	1 cut(s)	234
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
BmcAI	AGTACT	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	329
BmeRI	GACNNNNNGTC	1 cut(s)	335
BmgT120I	GGNCC	2 cut(s)	313, 329
BmiI	GGNNCC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	345
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bse1I	ACTGG	1 cut(s)	332
Bse3DI	GCAATG	1 cut(s)	146
BseGI	GGATG	4 cut(s)	10, 274, 379, 420
BseMI	GCAATG	1 cut(s)	146
BseMII	CTCAG	2 cut(s)	106, 298
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	1 cut(s)	10
BseXI	GCAGC	1 cut(s)	138
BshFI	GGCC	1 cut(s)	315
BslFI	GGGAC	1 cut(s)	403
BsmFI	GGGAC	1 cut(s)	403
BsmI	GAATGC	1 cut(s)	407
BsnI	GGCC	1 cut(s)	315
Bsp143I	GATC	4 cut(s)	60, 169, 199, 244
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	2 cut(s)	105, 297
BspLI	GGNNCC	1 cut(s)	42
BspPI	GGATC	2 cut(s)	164, 207
BsrDI	GCAATG	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	332
BssMI	GATC	4 cut(s)	60, 169, 199, 244
Bst4CI	ACNGT	1 cut(s)	142
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	2 cut(s)	92, 284
BstF5I	GGATG	4 cut(s)	10, 274, 379, 420
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	4 cut(s)	63, 172, 202, 247
BstMBI	GATC	4 cut(s)	60, 169, 199, 244
BstV1I	GCAGC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	315
BtsCI	GGATG	4 cut(s)	10, 274, 379, 420
BtsIMutI	CAGTG	1 cut(s)	346
Cac8I	GCNNGC	1 cut(s)	13
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	2 cut(s)	313, 329
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	1 cut(s)	366
CviJI	RGCY	4 cut(s)	31, 209, 277, 315
CviKI_1	RGCY	4 cut(s)	31, 209, 277, 315
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	2 cut(s)	92, 284
DpnI	GATC	4 cut(s)	62, 171, 201, 246
DpnII	GATC	4 cut(s)	60, 169, 199, 244
DriI	GACNNNNNGTC	1 cut(s)	335
Eam1105I	GACNNNNNGTC	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	329
Eco57I	CTGAAG	2 cut(s)	47, 369
FaeI	CATG	1 cut(s)	369
FaiI	YATR	3 cut(s)	53, 236, 367
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	1 cut(s)	365
Fnu4HI	GCNGC	1 cut(s)	152
FokI	GGATG	4 cut(s)	17, 281, 366, 427
Fsp4HI	GCNGC	1 cut(s)	152
FspBI	CTAG	1 cut(s)	248
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	1 cut(s)	152
GsuI	CTGGAG	1 cut(s)	345
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	315
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	1 cut(s)	369
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	1 cut(s)	372
Hpy188I	TCNGA	2 cut(s)	95, 166
Hpy188III	TCNNGA	2 cut(s)	254, 324
HpyAV	CCTTC	2 cut(s)	349, 393
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	4 cut(s)	15, 146, 365, 405
HpyF3I	CTNAG	2 cut(s)	92, 284
Hsp92II	CATG	1 cut(s)	369
HspAI	GCGC	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	60, 169, 199, 244
LpnPI	CCDG	7 cut(s)	57, 250, 271, 296, 309, 345, 372
Lsp1109I	GCAGC	1 cut(s)	138
MaeI	CTAG	1 cut(s)	248
MalI	GATC	4 cut(s)	62, 171, 201, 246
MboI	GATC	4 cut(s)	60, 169, 199, 244
MboII	GAAGA	4 cut(s)	104, 179, 421, 430
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	3 cut(s)	123, 237, 439
MlyI	GAGTC	1 cut(s)	366
MnlI	CCTC	5 cut(s)	31, 190, 197, 320, 391
MroXI	GAANNNNTTC	1 cut(s)	425
MseI	TTAA	4 cut(s)	126, 303, 318, 448
Mva1269I	GAATGC	1 cut(s)	407
NdeII	GATC	4 cut(s)	60, 169, 199, 244
NlaIII	CATG	1 cut(s)	369
NlaIV	GGNNCC	1 cut(s)	42
PctI	GAATGC	1 cut(s)	407
PdmI	GAANNNNTTC	1 cut(s)	425
PflFI	GACNNNGTC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	153
PleI	GAGTC	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	366
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	2 cut(s)	313, 329
PsuI	RGATCY	1 cut(s)	169
PsyI	GACNNNGTC	1 cut(s)	260
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
SaqAI	TTAA	4 cut(s)	126, 303, 318, 448
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	4 cut(s)	60, 169, 199, 244
Sau96I	GGNCC	2 cut(s)	313, 329
ScaI	AGTACT	1 cut(s)	99
SchI	GAGTC	1 cut(s)	366
SetI	ASST	5 cut(s)	33, 189, 211, 253, 360
SinI	GGWCC	1 cut(s)	329
Sse9I	AATT	3 cut(s)	123, 237, 439
SspMI	CTAG	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	142
TaqI	TCGA	1 cut(s)	202
TasI	AATT	3 cut(s)	123, 237, 439
TatI	WGTACW	1 cut(s)	97
Tru1I	TTAA	4 cut(s)	126, 303, 318, 448
Tru9I	TTAA	4 cut(s)	126, 303, 318, 448
TscAI	CASTG	1 cut(s)	346
TseI	GCWGC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	431
TspGWI	ACGGA	2 cut(s)	308, 367
TspRI	CASTG	1 cut(s)	346
Tth111I	GACNNNGTC	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	329
XapI	RAATTY	1 cut(s)	439
XmnI	GAANNNNTTC	1 cut(s)	425
XspI	CTAG	1 cut(s)	248
ZrmI	AGTACT	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.