RLG00000002497

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
35294627 .. 35295172
546 bp
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UTR
Exon/CDS
Intron
RLM00000002497

Sequence Viewer

Length: 546 bp
ATGTACAAAGATGAGAGAGTAGAAGAGATTCCTGTGGTGAATTTCATTTTCAGATACTCGCTTAAGAGAAAAGTCAGCGATGCAGAAACTGTTATAAAGAAACACAATGCGTTGGAAAACTTCTTGCCTTTGATTCCGCACTTTGGATCCAGTGGATGTGGCGTGCAACTCCTCGCTGAAGATGATTTGGGAACCAGAGAGTATGTTGATGATCTTTCTGCTACTTCAAAAGAATCACAACTCAGAGTACTGTTGGGATTTCTTCTACGAGAAATTAAAGATTTTTGGACAGTTGCATTGCTGCTGTGTTGTTCAGAAGATCCTTTGAACAAGAACTTCACATTAGAGGATCGAACAGCTTTGTTTGGAAAAGTCCAAAGCGCCATAATTGATGATCTAGGTCTTGACAGAGTCTGGGATGTAAAGACATTACTCAGTGGAACGGATATTATTAAACATCTGGACCTTAAATCTGGAGGACCAGTTGTCAGTGAATGGAAACGGAAAAGTATTTGCATGGCAGCTCGCTTATCCGTCAGGGACTAA

Protein Analysis

182

Amino Acids

20.47

Weight (kDa)

5.69

Isoelectric Point (pI)

28.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis pycom05g03810 pycom10g03770
rosa_chinensis RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 95
AciI CCGC 1 cut(s) 137
AclWI GGATC 4 cut(s) 141, 154, 314, 357
AcsI RAATTY 1 cut(s) 40
AcuI CTGAAG 1 cut(s) 198
AfaI GTAC 2 cut(s) 5, 249
AfiI CCNNNNNNNGG 1 cut(s) 143
AflII CTTAAG 1 cut(s) 62
AgsI TTSAA 2 cut(s) 228, 328
AhdI GACNNNNNGTC 1 cut(s) 485
AluBI AGCT 2 cut(s) 359, 524
AluI AGCT 2 cut(s) 359, 524
AlwI GGATC 4 cut(s) 141, 154, 314, 357
AlwNI CAGNNNCTG 2 cut(s) 89, 414
ApeKI GCWGC 2 cut(s) 301, 521
ApoI RAATTY 1 cut(s) 40
Asp700I GAANNNNTTC 1 cut(s) 27
AspLEI GCGC 1 cut(s) 383
AspS9I GGNCC 2 cut(s) 463, 479
AsuHPI GGTGA 1 cut(s) 49
AvaII GGWCC 2 cut(s) 463, 479
BamHI GGATCC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 288, 533
BfaI CTAG 1 cut(s) 398
BfoI RGCGCY 1 cut(s) 384
BfrI CTTAAG 1 cut(s) 62
BisI GCNGC 2 cut(s) 302, 522
BlsI GCNGC 2 cut(s) 303, 523
BmcAI AGTACT 1 cut(s) 249
Bme18I GGWCC 2 cut(s) 463, 479
BmeRI GACNNNNNGTC 1 cut(s) 485
BmgT120I GGNCC 2 cut(s) 463, 479
BmiI GGNNCC 2 cut(s) 148, 193
BmsI GCATC 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 495
BsaXI ACNNNNNCTCC 2 cut(s) 468, 498
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse1I ACTGG 2 cut(s) 150, 482
Bse3DI GCAATG 1 cut(s) 296
BseGI GGATG 2 cut(s) 161, 424
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMI GCAATG 1 cut(s) 296
BseMII CTCAG 2 cut(s) 256, 448
BseNI ACTGG 2 cut(s) 150, 482
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 2 cut(s) 288, 533
BslI CCNNNNNNNGG 1 cut(s) 143
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 5 cut(s) 146, 211, 319, 349, 394
BspACI CCGC 1 cut(s) 137
BspCNI CTCAG 2 cut(s) 255, 447
BspLI GGNNCC 2 cut(s) 148, 193
BspPI GGATC 4 cut(s) 141, 154, 314, 357
BspTI CTTAAG 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 296
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 150, 482
BssMI GATC 5 cut(s) 146, 211, 319, 349, 394
Bst4CI ACNGT 3 cut(s) 91, 252, 292
Bst6I CTCTTC 1 cut(s) 18
BstAFI CTTAAG 1 cut(s) 62
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 164, 526
BstDEI CTNAG 2 cut(s) 242, 434
BstF5I GGATG 2 cut(s) 161, 424
BstH2I RGCGCY 1 cut(s) 384
BstHHI GCGC 1 cut(s) 383
BstKTI GATC 5 cut(s) 149, 214, 322, 352, 397
BstMBI GATC 5 cut(s) 146, 211, 319, 349, 394
BstV1I GCAGC 2 cut(s) 288, 533
BstX2I RGATCY 2 cut(s) 146, 319
BstYI RGATCY 2 cut(s) 146, 319
BtgZI GCGATG 1 cut(s) 93
BtsCI GGATG 2 cut(s) 161, 424
BtsIMutI CAGTG 3 cut(s) 157, 442, 496
Cac8I GCNNGC 2 cut(s) 164, 526
CaiI CAGNNNCTG 2 cut(s) 89, 414
CfoI GCGC 1 cut(s) 383
Cfr13I GGNCC 2 cut(s) 463, 479
Csp6I GTAC 2 cut(s) 4, 248
CviAII CATG 1 cut(s) 517
CviJI RGCY 2 cut(s) 359, 524
CviKI_1 RGCY 2 cut(s) 359, 524
CviQI GTAC 2 cut(s) 4, 248
DdeI CTNAG 2 cut(s) 242, 434
DpnI GATC 5 cut(s) 148, 213, 321, 351, 396
DpnII GATC 5 cut(s) 146, 211, 319, 349, 394
DriI GACNNNNNGTC 1 cut(s) 485
Eam1104I CTCTTC 1 cut(s) 18
Eam1105I GACNNNNNGTC 1 cut(s) 485
EarI CTCTTC 1 cut(s) 18
Eco47I GGWCC 2 cut(s) 463, 479
Eco57I CTGAAG 1 cut(s) 198
FaeI CATG 1 cut(s) 520
FaiI YATR 4 cut(s) 95, 204, 386, 518
FatI CATG 1 cut(s) 516
Fnu4HI GCNGC 2 cut(s) 302, 522
FokI GGATG 2 cut(s) 168, 431
Fsp4HI GCNGC 2 cut(s) 302, 522
FspBI CTAG 1 cut(s) 398
GlaI GCGC 1 cut(s) 382
GluI GCNGC 2 cut(s) 302, 522
GsuI CTGGAG 1 cut(s) 495
HaeII RGCGCY 1 cut(s) 384
HhaI GCGC 1 cut(s) 383
Hin1II CATG 1 cut(s) 520
Hin6I GCGC 1 cut(s) 381
HinP1I GCGC 1 cut(s) 381
HinfI GANTC 4 cut(s) 28, 133, 233, 411
HphI GGTGA 1 cut(s) 49
Hpy188I TCNGA 3 cut(s) 53, 245, 316
Hpy188III TCNNGA 3 cut(s) 404, 461, 474
HpyCH4III ACNGT 3 cut(s) 91, 252, 292
HpyCH4V TGCA 4 cut(s) 83, 166, 296, 516
HpyF3I CTNAG 2 cut(s) 242, 434
Hsp92II CATG 1 cut(s) 520
HspAI GCGC 1 cut(s) 381
Kzo9I GATC 5 cut(s) 146, 211, 319, 349, 394
LpnPI CCDG 8 cut(s) 45, 163, 208, 400, 446, 459, 495, 523
Lsp1109I GCAGC 2 cut(s) 288, 533
LweI GCATC 1 cut(s) 70
MaeI CTAG 1 cut(s) 398
MalI GATC 5 cut(s) 148, 213, 321, 351, 396
MboI GATC 5 cut(s) 146, 211, 319, 349, 394
MboII GAAGA 4 cut(s) 35, 191, 254, 329
MflI RGATCY 2 cut(s) 146, 319
MluCI AATT 3 cut(s) 40, 273, 387
MlyI GAGTC 1 cut(s) 420
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 3 cut(s) 182, 340, 470
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 4 cut(s) 63, 276, 453, 468
MspCI CTTAAG 1 cut(s) 62
NdeII GATC 5 cut(s) 146, 211, 319, 349, 394
NlaIII CATG 1 cut(s) 520
NlaIV GGNNCC 2 cut(s) 148, 193
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 3 cut(s) 28, 133, 233
PflFI GACNNNGTC 1 cut(s) 410
PkrI GCNGC 2 cut(s) 303, 523
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
PsiI TTATAA 1 cut(s) 95
PspN4I GGNNCC 2 cut(s) 148, 193
PspPI GGNCC 2 cut(s) 463, 479
PstNI CAGNNNCTG 2 cut(s) 89, 414
PsuI RGATCY 2 cut(s) 146, 319
PsyI GACNNNGTC 1 cut(s) 410
RsaI GTAC 2 cut(s) 5, 249
RsaNI GTAC 2 cut(s) 4, 248
SaqAI TTAA 4 cut(s) 63, 276, 453, 468
SatI GCNGC 2 cut(s) 302, 522
Sau3AI GATC 5 cut(s) 146, 211, 319, 349, 394
Sau96I GGNCC 2 cut(s) 463, 479
ScaI AGTACT 1 cut(s) 249
SchI GAGTC 1 cut(s) 420
SetI ASST 4 cut(s) 361, 403, 468, 526
SfaNI GCATC 1 cut(s) 70
SinI GGWCC 2 cut(s) 463, 479
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 3 cut(s) 40, 273, 387
SsiI CCGC 1 cut(s) 137
SspMI CTAG 1 cut(s) 398
TaaI ACNGT 3 cut(s) 91, 252, 292
TaqI TCGA 1 cut(s) 352
TasI AATT 3 cut(s) 40, 273, 387
TatI WGTACW 2 cut(s) 3, 247
TfiI GAWTC 3 cut(s) 28, 133, 233
Tru1I TTAA 4 cut(s) 63, 276, 453, 468
Tru9I TTAA 4 cut(s) 63, 276, 453, 468
TscAI CASTG 3 cut(s) 157, 442, 496
TseI GCWGC 2 cut(s) 301, 521
TspDTI ATGAA 1 cut(s) 34
TspGWI ACGGA 3 cut(s) 458, 517, 523
TspRI CASTG 3 cut(s) 157, 442, 496
Tth111I GACNNNGTC 1 cut(s) 410
Vha464I CTTAAG 1 cut(s) 62
VpaK11BI GGWCC 2 cut(s) 463, 479
XapI RAATTY 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 1 cut(s) 398
ZrmI AGTACT 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.