Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000124.1

Orthogroup ID

OG0000288

Physical Location & Seq

Genomic Coordinates Reverse (-)

163031 .. 167914

Gene Structure 4884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000124.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgcctctgcgccaaaagctttgcaaacaacaggaaattaagctcaatctccgtttcctccattgttccagtttgaccacagctacgagctgcagtaccttgatgatgtccaaagctccgatctcaagttccactgctactatggaggccgccaacctggttccggcgaaagctagcccctcggaggccgcgctcttgtgggtctcgggaacctctgagttagcagcctcgagggagtggatggctgggccctcttttctgaacgcgcacctgagcagcccattctccaacgcgcaaatgatctatacagaacgaggttatgcaagtatgatcgggacacttgcccagatgcacacaactgtcagttcaacggcttttgccaatacgggagtcgctgtcagtacggagccagatgtttctaccggtctagataaagtctgggatgtgaagccattagttaatggaaaggagatcatggatgctttgcagcttaaatatggaggaccagttgtcagtaaatggcaacggaagctacttgcatggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001680 GO:0003674 GO:0003824 GO:0004652 GO:0004810 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0042780 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0052928 GO:0052929 GO:0070013 GO:0070566 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1990817

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

181

Amino Acids

19.51

Weight (kDa)

9.05

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca	FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica	MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica	Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis	pycom05g03810 pycom10g03770
rosa_chinensis	RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata	RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora	Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii	Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa	Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha	Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana	Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	229
AccII	CGCG	3 cut(s)	191, 266, 293
AciI	CCGC	2 cut(s)	150, 189
AfaI	GTAC	2 cut(s)	97, 403
AfiI	CCNNNNNNNGG	2 cut(s)	163, 184
AgeI	ACCGGT	1 cut(s)	422
AgsI	TTSAA	1 cut(s)	369
AhdI	GACNNNNNGTC	1 cut(s)	509
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	8 cut(s)	19, 43, 83, 90, 116, 173, 490, 532
AluI	AGCT	8 cut(s)	19, 43, 83, 90, 116, 173, 490, 532
Alw26I	GTCTC	1 cut(s)	208
Ama87I	CYCGRG	2 cut(s)	205, 229
AoxI	GGCC	3 cut(s)	147, 186, 248
ApaI	GGGCCC	1 cut(s)	252
ApeKI	GCWGC	4 cut(s)	90, 224, 276, 487
AsiGI	ACCGGT	1 cut(s)	422
AspLEI	GCGC	4 cut(s)	12, 193, 268, 295
AspS9I	GGNCC	3 cut(s)	248, 249, 503
AsuNHI	GCTAGC	1 cut(s)	173
AvaI	CYCGRG	2 cut(s)	205, 229
AvaII	GGWCC	1 cut(s)	503
BaeGI	GKGCMC	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	252
BbvI	GCAGC	4 cut(s)	77, 236, 288, 499
BccI	CCATC	1 cut(s)	235
BceAI	ACGGC	1 cut(s)	387
BciT130I	CCWGG	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	2 cut(s)	174, 428
BfmI	CTRYAG	1 cut(s)	91
BisI	GCNGC	6 cut(s)	91, 150, 189, 225, 277, 488
BlsI	GCNGC	6 cut(s)	92, 151, 190, 226, 278, 489
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	1 cut(s)	503
BmeRI	GACNNNNNGTC	1 cut(s)	509
BmeT110I	CYCGRG	2 cut(s)	205, 229
BmgT120I	GGNCC	3 cut(s)	248, 249, 503
BmiI	GGNNCC	4 cut(s)	162, 211, 250, 408
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	2 cut(s)	339, 469
BmtI	GCTAGC	1 cut(s)	177
Bpu10I	CCTNAGC	1 cut(s)	272
BpuEI	CTTGAG	1 cut(s)	109
BsaI	GGTCTC	1 cut(s)	208
BsaJI	CCNNGG	1 cut(s)	180
BsaWI	WCCGGW	1 cut(s)	422
BsaXI	ACNNNNNCTCC	4 cut(s)	381, 411, 492, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 184
Bse118I	RCCGGY	1 cut(s)	422
Bse1I	ACTGG	2 cut(s)	69, 506
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	3 cut(s)	246, 448, 484
BseLI	CCNNNNNNNGG	2 cut(s)	163, 184
BseMII	CTCAG	2 cut(s)	207, 263
BseNI	ACTGG	2 cut(s)	69, 506
BseSI	GKGCMC	1 cut(s)	252
BseXI	GCAGC	4 cut(s)	77, 236, 288, 499
BseYI	CCCAGC	1 cut(s)	245
Bsh1236I	CGCG	3 cut(s)	191, 266, 293
BshFI	GGCC	3 cut(s)	149, 188, 250
BshTI	ACCGGT	1 cut(s)	422
BsiHKCI	CYCGRG	2 cut(s)	205, 229
BsiSI	CCGG	2 cut(s)	164, 423
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	2 cut(s)	163, 184
BsmAI	GTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	349
BsnI	GGCC	3 cut(s)	149, 188, 250
Bso31I	GGTCTC	1 cut(s)	208
BsoBI	CYCGRG	2 cut(s)	205, 229
Bsp120I	GGGCCC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	4 cut(s)	120, 300, 330, 471
BspACI	CCGC	2 cut(s)	150, 189
BspANI	GGCC	3 cut(s)	149, 188, 250
BspCNI	CTCAG	2 cut(s)	208, 264
BspFNI	CGCG	3 cut(s)	191, 266, 293
BspLI	GGNNCC	4 cut(s)	162, 211, 250, 408
BspMAI	CTGCAG	1 cut(s)	95
BspOI	GCTAGC	1 cut(s)	177
BspTNI	GGTCTC	1 cut(s)	208
BsrFI	RCCGGY	1 cut(s)	422
BsrI	ACTGG	2 cut(s)	69, 506
BssAI	RCCGGY	1 cut(s)	422
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	4 cut(s)	120, 300, 330, 471
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	361
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	216, 272
BstF5I	GGATG	3 cut(s)	246, 448, 484
BstFNI	CGCG	3 cut(s)	191, 266, 293
BstHHI	GCGC	4 cut(s)	12, 193, 268, 295
BstKTI	GATC	4 cut(s)	123, 303, 333, 474
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	4 cut(s)	120, 300, 330, 471
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 529
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstSFI	CTRYAG	1 cut(s)	91
BstSLI	GKGCMC	1 cut(s)	252
BstUI	CGCG	3 cut(s)	191, 266, 293
BstV1I	GCAGC	4 cut(s)	77, 236, 288, 499
BsuRI	GGCC	3 cut(s)	149, 188, 250
BtsCI	GGATG	3 cut(s)	246, 448, 484
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	175
CfoI	GCGC	4 cut(s)	12, 193, 268, 295
Cfr10I	RCCGGY	1 cut(s)	422
Cfr13I	GGNCC	3 cut(s)	248, 249, 503
CsiI	ACCWGGT	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	96, 402
CspAI	ACCGGT	1 cut(s)	422
CviAII	CATG	2 cut(s)	475, 540
CviQI	GTAC	2 cut(s)	96, 402
DdeI	CTNAG	2 cut(s)	216, 272
DpnI	GATC	4 cut(s)	122, 302, 332, 473
DpnII	GATC	4 cut(s)	120, 300, 330, 471
DriI	GACNNNNNGTC	1 cut(s)	509
Eam1105I	GACNNNNNGTC	1 cut(s)	509
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	503
Eco88I	CYCGRG	2 cut(s)	205, 229
EcoO109I	RGGNCCY	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	2 cut(s)	478, 543
FaiI	YATR	7 cut(s)	143, 306, 321, 329, 476, 498, 541
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	2 cut(s)	474, 539
Fnu4HI	GCNGC	6 cut(s)	91, 150, 189, 225, 277, 488
FokI	GGATG	3 cut(s)	253, 455, 491
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	6 cut(s)	91, 150, 189, 225, 277, 488
FspBI	CTAG	2 cut(s)	174, 428
GlaI	GCGC	4 cut(s)	11, 192, 267, 294
GluI	GCNGC	6 cut(s)	91, 150, 189, 225, 277, 488
GsaI	CCCAGC	1 cut(s)	249
HaeIII	GGCC	3 cut(s)	149, 188, 250
HapII	CCGG	2 cut(s)	164, 423
HhaI	GCGC	4 cut(s)	12, 193, 268, 295
Hin1II	CATG	2 cut(s)	478, 543
Hin6I	GCGC	4 cut(s)	10, 191, 266, 293
HinP1I	GCGC	4 cut(s)	10, 191, 266, 293
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	1 cut(s)	390
HpaII	CCGG	2 cut(s)	164, 423
Hpy188I	TCNGA	4 cut(s)	120, 184, 217, 261
Hpy188III	TCNNGA	3 cut(s)	207, 334, 428
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	6 cut(s)	24, 93, 323, 352, 487, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 529
HpyF3I	CTNAG	2 cut(s)	216, 272
Hsp92II	CATG	2 cut(s)	478, 543
HspAI	GCGC	4 cut(s)	10, 191, 266, 293
Kzo9I	GATC	4 cut(s)	120, 300, 330, 471
LmnI	GCTCC	2 cut(s)	121, 406
Lsp1109I	GCAGC	4 cut(s)	77, 236, 288, 499
LweI	GCATC	2 cut(s)	339, 469
MabI	ACCWGGT	1 cut(s)	156
MaeI	CTAG	2 cut(s)	174, 428
MalI	GATC	4 cut(s)	122, 302, 332, 473
MboI	GATC	4 cut(s)	120, 300, 330, 471
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	399
MmeI	TCCRAC	1 cut(s)	312
MseI	TTAA	3 cut(s)	39, 459, 492
MspI	CCGG	2 cut(s)	164, 423
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
MvnI	CGCG	3 cut(s)	191, 266, 293
MwoI	GCNNNNNNNGC	2 cut(s)	16, 529
NdeII	GATC	4 cut(s)	120, 300, 330, 471
NheI	GCTAGC	1 cut(s)	173
NlaIII	CATG	2 cut(s)	478, 543
NlaIV	GGNNCC	4 cut(s)	162, 211, 250, 408
PaeR7I	CTCGAG	1 cut(s)	229
PinAI	ACCGGT	1 cut(s)	422
PkrI	GCNGC	6 cut(s)	92, 151, 190, 226, 278, 489
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	156
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	4 cut(s)	162, 211, 250, 408
PspOMI	GGGCCC	1 cut(s)	248
PspPI	GGNCC	3 cut(s)	248, 249, 503
PspXI	VCTCGAGB	1 cut(s)	229
PstI	CTGCAG	1 cut(s)	95
RsaI	GTAC	2 cut(s)	97, 403
RsaNI	GTAC	2 cut(s)	96, 402
SaqAI	TTAA	3 cut(s)	39, 459, 492
SatI	GCNGC	6 cut(s)	91, 150, 189, 225, 277, 488
Sau3AI	GATC	4 cut(s)	120, 300, 330, 471
Sau96I	GGNCC	3 cut(s)	248, 249, 503
SchI	GAGTC	1 cut(s)	399
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	252
SexAI	ACCWGGT	1 cut(s)	156
SfaNI	GCATC	2 cut(s)	339, 469
SfcI	CTRYAG	1 cut(s)	91
Sfr274I	CTCGAG	1 cut(s)	229
SinI	GGWCC	1 cut(s)	503
SlaI	CTCGAG	1 cut(s)	229
SmlI	CTYRAG	2 cut(s)	124, 229
SmoI	CTYRAG	2 cut(s)	124, 229
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	2 cut(s)	150, 189
SspMI	CTAG	2 cut(s)	174, 428
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	1 cut(s)	230
TasI	AATT	1 cut(s)	36
TauI	GCSGC	2 cut(s)	152, 191
Tru1I	TTAA	3 cut(s)	39, 459, 492
Tru9I	TTAA	3 cut(s)	39, 459, 492
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	4 cut(s)	90, 224, 276, 487
TspGWI	ACGGA	3 cut(s)	41, 419, 541
TspRI	CASTG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	503
XbaI	TCTAGA	1 cut(s)	427
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139
XhoI	CTCGAG	1 cut(s)	229
XspI	CTAG	2 cut(s)	174, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.