Rh7AG307100

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
34323629 .. 34324759
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG307100.1

Sequence Viewer

Length: 300 bp
ATGGCAGATGGCCTTATCGAAATATTTTTCTGTTCCTCCAACCTCAAATTCCTGGATCTGCCATCCGTGATGTCTACGCCGACCCTACAAGTGAGGGACTTGGTTGAACTCGATGAAACTGAACGAAAGATCTTCAAACTGTTGCTGGGAACGCTTGACCATTATAAACTGAAGACAGAGCTTCGTGTCGCAGGTGGATGGGTCGGTGATAAGCTTCTGGGAGCAGAATGCAATGACATTGACATTGCTTTGGAAAATATGATGGGGAGCGATTTTGTTAAAATGGTGGAAAGTACATGA

Protein Analysis

99

Amino Acids

11.08

Weight (kDa)

4.52

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22660 AT1G22660 AT1G22660 AT1G22660 AT1G22660
fragaria_vesca FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440 FvH4_4g33440
malus_domestica MD05G1045700.v1.1 MD10G1052700.v1.1
prunus_persica Prupe.6G147900_v2.0.a1 Prupe.6G147900_v2.0.a1
pyrus_communis pycom05g03810 pycom10g03770
rosa_chinensis RchiOBHm_Chr3g0457671 RchiOBHm_Chr4g0411681 RchiOBHm_Chr4g0411871 RchiOBHm_Chr4g0412011 RchiOBHm_Chr4g0442691 RchiOBHm_Chr5g0054011 RchiOBHm_Chr7g0192731 RchiOBHm_Chr7g0217301 RchiOBHm_Chr7g0217311
rosa_laevigata RLG00000002496 RLG00000002497 RLG00000004333 RLG00000005141 RLG00000005991 RLG00000008329 RLG00000008334
rosa_multiflora Rmu_co8052866.1_g000001 Rmu_sc0000124.1_g000041 Rmu_sc0000711.1_g000018 Rmu_sc0000711.1_g000026 Rmu_sc0000711.1_g000049 Rmu_sc0001260.1_g000024 Rmu_sc0002040.1_g000016 Rmu_sc0003311.1_g000009 Rmu_sc0003541.1_g000049 Rmu_sc0007633.1_g000011 Rmu_sc0007784.1_g000001 Rmu_sc0007843.1_g000002 Rmu_sc0018873.1_g000007 Rmu_sc0037239.1_g000001 Rmu_ssc0000204.1_g000025
rosa_roxburghii Rroxscaffold_1G00010150 Rroxscaffold_2G00085070 Rroxscaffold_3G00237950 Rroxscaffold_3G00238000 Rroxscaffold_3G00238060 Rroxscaffold_3G00242460 Rroxscaffold_5G00356230 Rroxscaffold_5G00356320 Rroxscaffold_5G00357990 Rroxscaffold_5G00383500
rosa_rugosa Rorug04G0107400 Rorug04G0107400 Rorug04G0342400.1 Rorug04G0342500.1 Rorug04G0342600.1 Rorug06G0053100 Rorug06G0099700 Rorug07G0004300 Rorug07G0167800 Rorug07G0167900
rosa_samantha Rh2CG570300 Rh2DG609200 Rh4AG068500 Rh4AG169600 Rh4AG169900 Rh4AG170200 Rh4AG170600 Rh4AG202600 Rh4AG394800 Rh4BG066700 Rh4BG066800 Rh4BG166500 Rh4BG166600 Rh4BG166700 Rh4BG167000 Rh4BG167300 Rh4BG168500 Rh4BG169200 Rh4BG208600 Rh4BG407700 Rh4CG074000 Rh4CG181100 Rh4CG181200 Rh4CG181700 Rh4CG423100 Rh4DG163900 Rh4DG164400 Rh4DG165100 Rh4DG165200 Rh4DG200000 Rh4DG401800 Rh6BG194500 Rh6CG100200 Rh7AG129300 Rh7AG307100 Rh7BG130700 Rh7BG298000 Rh7CG134100 Rh7DG131500 Rh7DG306700
rosa_wichuraiana Rw0G007750 Rw4G014080 Rw4G014120 Rw4G014180 Rw4G017150 Rw4G034120 Rw7G011060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 165
AarI CACCTGC 1 cut(s) 182
Acc36I ACCTGC 1 cut(s) 182
AccI GTMKAC 1 cut(s) 74
AclWI GGATC 1 cut(s) 63
AcsI RAATTY 1 cut(s) 47
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 1 cut(s) 295
AgsI TTSAA 2 cut(s) 107, 136
AjnI CCWGG 1 cut(s) 51
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AluBI AGCT 2 cut(s) 181, 214
AluI AGCT 2 cut(s) 181, 214
AlwI GGATC 1 cut(s) 63
AoxI GGCC 1 cut(s) 10
ApoI RAATTY 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 179
BccI CCATC 4 cut(s) 2, 70, 192, 256
BciT130I CCWGG 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 182
BglII AGATCT 1 cut(s) 129
Bme1390I CCNGG 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 179
Bse3DI GCAATG 2 cut(s) 238, 243
BseBI CCWGG 1 cut(s) 53
BseGI GGATG 2 cut(s) 62, 203
BseMI GCAATG 2 cut(s) 238, 243
BseYI CCCAGC 1 cut(s) 145
BshFI GGCC 1 cut(s) 12
BslFI GGGAC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 110
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 1 cut(s) 12
Bsp143I GATC 2 cut(s) 55, 129
BspANI GGCC 1 cut(s) 12
BspMI ACCTGC 1 cut(s) 182
BspPI GGATC 1 cut(s) 63
BsrDI GCAATG 2 cut(s) 238, 243
BssMI GATC 2 cut(s) 55, 129
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 141
BstF5I GGATG 2 cut(s) 62, 203
BstKTI GATC 2 cut(s) 58, 132
BstMBI GATC 2 cut(s) 55, 129
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 2 cut(s) 55, 129
BstYI RGATCY 2 cut(s) 55, 129
BsuRI GGCC 1 cut(s) 12
BtsCI GGATG 2 cut(s) 62, 203
BveI ACCTGC 1 cut(s) 182
Csp6I GTAC 1 cut(s) 294
CviAII CATG 1 cut(s) 297
CviJI RGCY 3 cut(s) 12, 181, 214
CviKI_1 RGCY 3 cut(s) 12, 181, 214
CviQI GTAC 1 cut(s) 294
DpnI GATC 2 cut(s) 57, 131
DpnII GATC 2 cut(s) 55, 129
Eco57I CTGAAG 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 51
FaeI CATG 1 cut(s) 300
FaiI YATR 3 cut(s) 165, 260, 298
FaqI GGGAC 1 cut(s) 110
FatI CATG 1 cut(s) 296
FblI GTMKAC 1 cut(s) 74
FokI GGATG 2 cut(s) 49, 210
GsaI CCCAGC 1 cut(s) 149
HaeIII GGCC 1 cut(s) 12
Hin1II CATG 1 cut(s) 300
HindIII AAGCTT 1 cut(s) 212
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 75
Hpy8I GTNNAC 1 cut(s) 75
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4V TGCA 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
Hsp92II CATG 1 cut(s) 300
Kzo9I GATC 2 cut(s) 55, 129
LmnI GCTCC 2 cut(s) 221, 267
LpnPI CCDG 5 cut(s) 38, 65, 131, 177, 203
MalI GATC 2 cut(s) 57, 131
MboI GATC 2 cut(s) 55, 129
MboII GAAGA 2 cut(s) 124, 184
MflI RGATCY 2 cut(s) 55, 129
MluCI AATT 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 3 cut(s) 46, 53, 87
MseI TTAA 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 53
Mva1269I GAATGC 1 cut(s) 233
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 151
NdeII GATC 2 cut(s) 55, 129
NlaIII CATG 1 cut(s) 300
PaqCI CACCTGC 1 cut(s) 182
PctI GAATGC 1 cut(s) 233
PfoI TCCNGGA 1 cut(s) 51
PsiI TTATAA 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 145
PspGI CCWGG 1 cut(s) 51
PsuI RGATCY 2 cut(s) 55, 129
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
SaqAI TTAA 1 cut(s) 279
Sau3AI GATC 2 cut(s) 55, 129
ScrFI CCNGG 1 cut(s) 53
SetI ASST 4 cut(s) 45, 183, 196, 216
Sse9I AATT 1 cut(s) 47
SspI AATATT 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 18, 111
TasI AATT 1 cut(s) 47
TatI WGTACW 1 cut(s) 293
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TspDTI ATGAA 1 cut(s) 129
TspGWI ACGGA 1 cut(s) 55
XapI RAATTY 1 cut(s) 47
XmiI GTMKAC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.