Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000805

Physical Location & Seq

Genomic Coordinates Reverse (-)

24966827 .. 24967578

Gene Structure 752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCCAAAATTACAGTGGTAGATTTCTCCGACGAAGACTGCTTCAAGCCAGGGACCAGTTCTTGGCTCTCATTACGCAAAGACATTTGTCATGCACTTGAAGAGCTTGGCTGTTTCGTGGCAAAACTACCCGACCTAATTCCTTCTGAGATTCGCAGTCCCTTCTTTGGTACGTTGGATGAGTTGTTTGATTTCCCAACCGAAACCAAGCTGCAAATTACTTATGAAAGGCCTTTCCCCATGGGCTACATATCTTTGAACGCCGCTAATGAAAGCTTGGCGATTGGTTATCCTACAAACCCTGAAGAGACTAAAAAGTTTACGCATCACTTTTGGCCCAATGGAAACGATCGATTTCGTCAGGGTGCTGATTTGTTTGCAAAAGTGATGGAAAAACTAGATCATACTGTGACAAGAATGGTATTTGAAAACTATGGAGTGGGGAAGTACCATGATGATCACATCCGATCAGTTGTTTACTTCTACAAATTTAATAAATACAATGAACCTGAGAAAAGGGGAATTGATGTGGGAATGCCCGGCCATACAGACAAGGGCTTTAGCACCGTACTCTGTCAAAATCATGTCAAAGGTCTGGAAATAAAGTCAAAGGACGATGAGTGGATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

211

Amino Acids

24.17

Weight (kDa)

5.62

Isoelectric Point (pI)

33.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	6 - 92	6.6e-06	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000805)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00520 FvH4_7g10920 FvH4_7g10930
malus_domestica	MD03G1207600.v1.1 MD03G1213900.v1.1 MD06G1027200.v1.1 MD06G1027500.v1.1 MD06G1027800.v1.1 MD06G1028300.v1.1 MD06G1028400.v1.1 MD06G1028500.v1.1 MD06G1041300.v1.1 MD06G1041400.v1.1 MD06G1041500.v1.1 MD09G1188300.v1.1 MD09G1188700.v1.1 MD11G1275100.v1.1 MD11G1275200.v1.1 MD15G1255100.v1.1 MD16G1268200.v1.1
prunus_persica	Prupe.1G417300_v2.0.a1 Prupe.5G043300_v2.0.a1 Prupe.5G043400_v2.0.a1 Prupe.5G043600_v2.0.a1 Prupe.5G048100_v2.0.a1 Prupe.7G266800_v2.0.a1
pyrus_communis	pycom06g02240 pycom06g02260 pycom06g03470 pycom06g07340 pycom08g20210 pycom09g10520 pycom09g10550 pycom09g10590 pycom11g24310 pycom11g24320 pycom16g23730
rosa_chinensis	RchiOBHm_Chr2g0085151 RchiOBHm_Chr2g0107871
rosa_laevigata	RLG00000003225 RLG00000015660
rosa_multiflora	Rmu_sc0000841.1_g000009 Rmu_sc0001484.1_g000037 Rmu_sc0006741.1_g000002 Rmu_sc0008647.1_g000010 Rmu_sc0008647.1_g000011
rosa_roxburghii	Rroxscaffold_2G00135880 Rroxscaffold_2G00155610 Rroxscaffold_3G00250550
rosa_rugosa	Rorug01G0457900 Rorug02G0148200 Rorug07G0103600 Rorug07G0103600
rosa_samantha	Rh2BG007000 Rh2BG210600 Rh2BG395500 Rh2CG007800 Rh2CG202500 Rh2DG007900 Rh2DG008000 Rh2DG205500 Rh7BG233500 Rh7CG253600
rosa_wichuraiana	Rw0G010850 Rw2G000580 Rw2G000590 Rw2G015620 Rw2G015670 Rw7G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	63
AciI	CCGC	1 cut(s)	264
AcoI	YGGCCR	2 cut(s)	3, 541
AcsI	RAATTY	1 cut(s)	488
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	3 cut(s)	172, 449, 570
AfiI	CCNNNNNNNGG	2 cut(s)	63, 167
AgsI	TTSAA	4 cut(s)	46, 101, 259, 428
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	3 cut(s)	106, 211, 276
AluI	AGCT	3 cut(s)	106, 211, 276
Alw26I	GTCTC	1 cut(s)	302
AoxI	GGCC	4 cut(s)	3, 230, 335, 541
ApeKI	GCWGC	1 cut(s)	211
ApoI	RAATTY	1 cut(s)	488
AspS9I	GGNCC	2 cut(s)	54, 336
AsuC2I	CCSGG	1 cut(s)	540
AvaII	GGWCC	1 cut(s)	54
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	198
BccI	CCATC	1 cut(s)	382
BciT130I	CCWGG	1 cut(s)	51
BclI	TGATCA	1 cut(s)	457
BcnI	CCSGG	1 cut(s)	540
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	1 cut(s)	398
BisI	GCNGC	2 cut(s)	212, 264
BlsI	GCNGC	2 cut(s)	213, 265
Bme1390I	CCNGG	2 cut(s)	51, 540
Bme18I	GGWCC	1 cut(s)	54
BmgT120I	GGNCC	2 cut(s)	54, 336
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	51, 540
BmsI	GCATC	1 cut(s)	334
BoxI	GACNNNNGTC	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	42
BpuMI	CCSGG	1 cut(s)	540
Bsa29I	ATCGAT	1 cut(s)	352
BsaJI	CCNNGG	2 cut(s)	50, 240
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 167
Bse1I	ACTGG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	51
BseCI	ATCGAT	1 cut(s)	352
BseDI	CCNNGG	2 cut(s)	50, 240
BseGI	GGATG	2 cut(s)	184, 462
BseLI	CCNNNNNNNGG	2 cut(s)	63, 167
BseMII	CTCAG	2 cut(s)	138, 501
BseNI	ACTGG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	198
Bsh1285I	CGRYCG	1 cut(s)	352
BshFI	GGCC	4 cut(s)	5, 232, 337, 543
BshVI	ATCGAT	1 cut(s)	352
BsiEI	CGRYCG	1 cut(s)	352
BsiSI	CCGG	1 cut(s)	540
BslFI	GGGAC	2 cut(s)	67, 144
BslI	CCNNNNNNNGG	2 cut(s)	63, 167
BsmAI	GTCTC	1 cut(s)	302
BsmFI	GGGAC	2 cut(s)	67, 144
BsmI	GAATGC	1 cut(s)	540
BsnI	GGCC	4 cut(s)	5, 232, 337, 543
Bsp143I	GATC	4 cut(s)	349, 400, 457, 467
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	1 cut(s)	264
BspANI	GGCC	4 cut(s)	5, 232, 337, 543
BspCNI	CTCAG	2 cut(s)	139, 502
BspDI	ATCGAT	1 cut(s)	352
BspHI	TCATGA	1 cut(s)	629
BspLI	GGNNCC	1 cut(s)	55
BspQI	GCTCTTC	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	50, 240
BssMI	GATC	4 cut(s)	349, 400, 457, 467
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	3 cut(s)	16, 409, 568
Bst6I	CTCTTC	2 cut(s)	96, 300
BstDEI	CTNAG	2 cut(s)	147, 510
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	2 cut(s)	184, 462
BstKTI	GATC	4 cut(s)	352, 403, 460, 470
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	4 cut(s)	349, 400, 457, 467
BstMCI	CGRYCG	1 cut(s)	352
BstNI	CCWGG	1 cut(s)	51
BstPAI	GACNNNNGTC	1 cut(s)	87
BstSCI	CCNGG	2 cut(s)	49, 538
BstV1I	GCAGC	1 cut(s)	198
BstV2I	GAAGAC	1 cut(s)	42
Bsu15I	ATCGAT	1 cut(s)	352
BsuRI	GGCC	4 cut(s)	5, 232, 337, 543
BsuTUI	ATCGAT	1 cut(s)	352
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	2 cut(s)	184, 462
BtsIMutI	CAGTG	1 cut(s)	21
CciI	TCATGA	1 cut(s)	629
Cfr13I	GGNCC	2 cut(s)	54, 336
ClaI	ATCGAT	1 cut(s)	352
Csp6I	GTAC	3 cut(s)	171, 448, 569
CviAII	CATG	5 cut(s)	92, 241, 452, 584, 630
CviQI	GTAC	3 cut(s)	171, 448, 569
DdeI	CTNAG	2 cut(s)	147, 510
DpnI	GATC	4 cut(s)	351, 402, 459, 469
DpnII	GATC	4 cut(s)	349, 400, 457, 467
EaeI	YGGCCR	2 cut(s)	3, 541
Eam1104I	CTCTTC	2 cut(s)	96, 300
EarI	CTCTTC	2 cut(s)	96, 300
Eco130I	CCWWGG	1 cut(s)	240
Eco147I	AGGCCT	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	5 cut(s)	95, 244, 455, 587, 633
FaqI	GGGAC	2 cut(s)	67, 144
FatI	CATG	5 cut(s)	91, 240, 451, 583, 629
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	2 cut(s)	212, 264
FokI	GGATG	2 cut(s)	191, 449
Fsp4HI	GCNGC	2 cut(s)	212, 264
FspBI	CTAG	1 cut(s)	398
GluI	GCNGC	2 cut(s)	212, 264
HaeIII	GGCC	4 cut(s)	5, 232, 337, 543
HapII	CCGG	1 cut(s)	540
Hin1II	CATG	5 cut(s)	95, 244, 455, 587, 633
HindIII	AAGCTT	1 cut(s)	274
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	1 cut(s)	540
Hpy166II	GTNNAC	2 cut(s)	321, 478
Hpy188I	TCNGA	3 cut(s)	31, 148, 467
Hpy188III	TCNNGA	2 cut(s)	596, 630
Hpy8I	GTNNAC	2 cut(s)	321, 478
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	153, 172
HpyCH4III	ACNGT	3 cut(s)	16, 409, 568
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	3 cut(s)	95, 214, 380
HpyF3I	CTNAG	2 cut(s)	147, 510
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	5 cut(s)	95, 244, 455, 587, 633
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	4 cut(s)	349, 400, 457, 467
LguI	GCTCTTC	1 cut(s)	96
LpnPI	CCDG	8 cut(s)	36, 63, 70, 315, 347, 522, 553, 581
Lsp1109I	GCAGC	1 cut(s)	198
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	4 cut(s)	351, 402, 459, 469
MboI	GATC	4 cut(s)	349, 400, 457, 467
MboII	GAAGA	3 cut(s)	47, 113, 317
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	9, 138, 216, 488, 522
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	54, 156
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	492
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	540
MspR9I	CCNGG	2 cut(s)	51, 540
Mva1269I	GAATGC	1 cut(s)	540
MvaI	CCWGG	1 cut(s)	51
NciI	CCSGG	1 cut(s)	540
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	4 cut(s)	349, 400, 457, 467
NlaIII	CATG	5 cut(s)	95, 244, 455, 587, 633
NlaIV	GGNNCC	1 cut(s)	55
NmuCI	GTSAC	1 cut(s)	409
PagI	TCATGA	1 cut(s)	629
PceI	AGGCCT	1 cut(s)	232
PciSI	GCTCTTC	1 cut(s)	96
PctI	GAATGC	1 cut(s)	540
PfeI	GAWTC	1 cut(s)	151
PflMI	CCANNNNNTGG	1 cut(s)	63
PkrI	GCNGC	2 cut(s)	213, 265
Ple19I	CGATCG	1 cut(s)	352
PshAI	GACNNNNGTC	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	55
PspPI	GGNCC	2 cut(s)	54, 336
PvuI	CGATCG	1 cut(s)	352
RsaI	GTAC	3 cut(s)	172, 449, 570
RsaNI	GTAC	3 cut(s)	171, 448, 569
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	2 cut(s)	212, 264
Sau3AI	GATC	4 cut(s)	349, 400, 457, 467
Sau96I	GGNCC	2 cut(s)	54, 336
ScrFI	CCNGG	2 cut(s)	51, 540
SetI	ASST	7 cut(s)	108, 138, 176, 213, 278, 511, 595
SfaNI	GCATC	1 cut(s)	334
SinI	GGWCC	1 cut(s)	54
Sse9I	AATT	5 cut(s)	9, 138, 216, 488, 522
SseBI	AGGCCT	1 cut(s)	232
SsiI	CCGC	1 cut(s)	264
SspMI	CTAG	1 cut(s)	398
StuI	AGGCCT	1 cut(s)	232
StyD4I	CCNGG	2 cut(s)	49, 538
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	3 cut(s)	16, 409, 568
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	1 cut(s)	352
TasI	AATT	5 cut(s)	9, 138, 216, 488, 522
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	4 cut(s)	240, 285, 519, 618
TspRI	CASTG	1 cut(s)	21
Van91I	CCANNNNNTGG	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	54
XapI	RAATTY	1 cut(s)	488
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.