RchiOBHm_Chr4g0414341

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000582
Physical Location & Seq
Forward (+)
38807449 .. 38811475
4027 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2565 bp
ATGAACGCACCTCCTTTTCTCTCCTCCGGCGGCCCATGGGGCCAGCCACCGCCGCCGCCACTTGCCCTAAATCCCAATTTCTCCCTCCAAAACCCCCTCAATCTATACATGTACCTTTCAAACCTCGCCTCCTTCACACCCCACTACTATCCACCTTTCCCTCCCAATAATTTCCTAGTCCAAAACCCTAGCTTCGCCCCCAAGCACTTCTCCAATTCAGCATTTCATCCTCAGCTGCTGGAGAGAATCGACGGCGCCGTGAAGAAGGCTCGCTCCGACCTTATTGCCGCAGGGGAAAGCGTCTCGGCGTGGAAGGTCTCGCAGTCTGCGATTCGGATACTCGAGGTTGATTGCTGGAGCTCTCTAGGGTTTCAAATGCAGCAGGTGCCATCTCTGCACCGCCTCATGCTCACTCAAGGCAAGATAGATGCATTTATCCATTGTTTTGTTGGGGTTCGAAGAATTGCTTCATTGTATGATCTCGAAGTAGCAATCTGCGAGAATGAGGGTGTTGAACAGTTTGAAGAGCTGGGATTGGGCCCTTTGTTGCGAAATCCTCTTGTCGTGCATTATTTCTCAGTGAAGTGTGATGCAACTGAAGTGTTTAGGATAACGAGTGAGGAGATAATATCTTTACTTTCTGAGTTCATGGATGCTTGTAAACATACATATATAAGGGTTGAAGAATTTTTAGATTTCATTGTAAAGAAGTGTGCAGTTGCAAGCAGAGAAGAGCTTGGAATACGAATTTACAGCTTGGGGATGCATATTTCAGCCATCCGGGTTGCTAGGGATTTAGAATCTGCTGCTCTGAAGAAATCTGGAGGGTTAATTATTCAAAAACCAGATTCAAGATTTATGAAGCGACCAATGAGAATGCAGCAAGACGAACATTTGTCCACCTCCATACATAAACAGTTTTGTGGCAAGCACATTAGGTTTGATTCAGAGGATGAATGTAGTGATGACGAAAATAATGACCATGTCAAATGCAACCAGGTTAACTTACCTTCACAATCTGCTAAAAGTTCTGACAGAGTGGACAGTGATGATGGTTTGGTTGTCTCTCCATCACAATCCAAGGGTCCACCCAACCAGGTTAACATATCATCACAATCTGCTGAAAGTTTTGACAGACTGAACACTGATGATGGTTTGGTGGTCTCTCCATCACAATCCAAAGCTTCTCTTCCCTCATTGAAAATGCAGCAAGACAAAGGTTTCAGTACCATTTCTTGTCATGTTGATTCATTTTTGTCTGTACATAAGCAGTTTTGTGGCAAGCACATTAGGTTTGATTTAGAGGATGAAGGTAGTGATGATGAAAATTATGACCATGTCAGAAGCAACCAGGTTAACTTATCTTCACAATTTGCTAAAAGTTCGGACAGAGTGGACTGTGATGATGGTTTGGTTGTCTCTCCATCACAATCCAAGGGTCCACTCAACCAGGTAAACTTATCACAATCTGCTGAAAGTTCTGACAGAGTGAACACTGATGATGGTTTGCTGGTCTCTCCATCACAATCCAAAGGTCCACTTCCCTCATTGAAAATGCAGCAAGAGAAAGGTTTCAGTACCATTTCTCGTCATGTTGATTCATTTTTCTCTGTAAATAAGCAGTTTTGGGGCAAGCGCATTAGGTTTGATTCTGCAGAAAACTCGGAGGATGAATGTAGTGATGATGATTTACATGATGAAGAAGATTATAATTGTGACCAGGTCACATGCAGTGTGGTTAACTTCTCATCACAATCTGGTGGAAGGTCTGACCGTGTGAGCAGCTGTCCTTACCCATCTGCAATAGAAGAGATACAACGGCTTGGGTTGGACCAGCTTTCCCCAGATAGTGGCGGCCAAAAGCACAAAGAGCCTAATGACTCAGTTAAAAAGAAGAGAAAATCTGAAAATCTTGTAACTGCAATCTCTGTGCCCCCCAAATTGTGTAAGACAGAAAAGGTAGAACAAGTCGCACGGCCAATAGAGAATGGCAGGGAAGCCAATAATGTTAGAAATTTGGATGGAAGGAAAGCGGAAAGCTGGCCACCTGTGATTGGAGAACTGCACCAAGATACTCCTCAGTGGGGCACATCTAACTTTGGCAAGAGAGATCGTCTTAGTACTTGCACACCTGATGCAATACAAGCAAAGGAAACTGGGAGACTAGGCGAGCTTGCTGCTTTTAAATACTTCATTGAGAAAGCTGGCAAGTCAGCTGTGAAGTGGGTTAATGAGCATAGTGAAACAAGGCTACCGTATGATATAGTGGTAGGGGAGAATGAAGACAGAAAAGAGTTCATTGAAGTTAAAGCAACCAGAAATCCAACCAAAGACTGGTTTGAAATGTCAGTGAGACAGTTGCAATTTGCAGTTGAGCAGGGTGAAGCTTTCAGTATTGCTCATGTCATTTTATCAGATTATAATGTTGCGACGGTGAGAGTGTACAACAATCTGGAGAAACTACTGATGAAGCATAACAACCAGGAGCTACAGGACCAGGATTGCAAGCTGAAGTTGGTTGTCTTGGTGCTTGAGCCGCAGAAGGAATTTACCATTGTGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3883

Protein Analysis

854

Amino Acids

95.62

Weight (kDa)

5.55

Isoelectric Point (pI)

55.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOV_C PF13020 723 - 804 9.8e-18 Protein NO VEIN, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000582)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08300 AT1G08300 AT1G08300 AT4G13750
fragaria_vesca FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_2g13620 FvH4_4g13620 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13640 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660 FvH4_4g13660
malus_domestica MD04G1012800.v1.1 MD04G1012900.v1.1 MD04G1013100.v1.1 MD04G1013300.v1.1
prunus_persica Prupe.1G159000_v2.0.a1 Prupe.1G159100_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G159200_v2.0.a1 Prupe.1G358100_v2.0.a1
pyrus_communis pycom04g01020 pycom04g01030
rosa_chinensis RchiOBHm_Chr4g0414341 RchiOBHm_Chr4g0414351 RchiOBHm_Chr6g0275261 RchiOBHm_Chr7g0213881 RchiOBHm_Chr7g0213891
rosa_laevigata RLG00000008153 RLG00000008155 RLG00000013477
rosa_multiflora Rmu_co8510163.1_g000001 Rmu_sc0004087.1_g000027 Rmu_sc0005196.1_g000014 Rmu_sc0005558.1_g000005 Rmu_sc0005558.1_g000006 Rmu_sc0008100.1_g000005 Rmu_sc0008560.1_g000005
rosa_roxburghii Rroxscaffold_5G00358210 Rroxscaffold_5G00358220 Rroxscaffold_7G00187920 Rroxscaffold_7G00187930 Rroxscaffold_7G00193450
rosa_rugosa Rorug04G0127100 Rorug04G0127200 Rorug04G0127300 Rorug04G0127400 Rorug06G0090600
rosa_samantha Rh4AG185200 Rh4AG185300 Rh4AG185500 Rh4BG184700 Rh4BG184800 Rh4CG198000 Rh4CG198100 Rh4DG182400 Rh4DG182600 Rh6AG204100 Rh6BG207000 Rh6CG209600 Rh6DG200000 Rh7AG277400 Rh7CG296400 Rh7CG296500
rosa_wichuraiana Rw4G015850 Rw4G015860 Rw6G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1710, 2421
AarI CACCTGC 1 cut(s) 373
Acc36I ACCTGC 1 cut(s) 373
AccB1I GGYRCC 2 cut(s) 254, 385
AccB7I CCANNNNNTGG 2 cut(s) 1850, 2334
AciI CCGC 9 cut(s) 30, 50, 53, 56, 288, 400, 1854, 2033, 2537
AcoI YGGCCR 3 cut(s) 1855, 1976, 2042
AcsI RAATTY 4 cut(s) 686, 747, 2014, 2546
AcuI CTGAAG 3 cut(s) 618, 833, 2531
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 6 cut(s) 113, 1228, 1263, 1579, 2122, 2444
AfiI CCNNNNNNNGG 4 cut(s) 1850, 2054, 2084, 2334
AflIII ACRYGT 1 cut(s) 108
AjnI CCWGG 7 cut(s) 996, 1095, 1350, 1449, 1719, 2481, 2496
Alw21I GWGCWC 1 cut(s) 362
Alw26I GTCTC 8 cut(s) 307, 322, 1069, 1168, 1423, 1519, 2155, 2347
AlwNI CAGNNNCTG 1 cut(s) 238
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 6 cut(s) 31, 40, 538, 1855, 1976, 2042
ApaI GGGCCC 1 cut(s) 542
ApeKI GCWGC 8 cut(s) 235, 379, 806, 880, 1207, 1558, 1782, 2177
ApoI RAATTY 4 cut(s) 686, 747, 2014, 2546
Asp700I GAANNNNTTC 2 cut(s) 466, 1571
AspLEI GCGC 2 cut(s) 257, 1638
AspS9I GGNCC 9 cut(s) 32, 40, 538, 539, 1085, 1439, 1535, 1831, 2494
AsuC2I CCSGG 1 cut(s) 782
AsuHPI GGTGA 2 cut(s) 2393, 2446
AsuII TTCGAA 1 cut(s) 457
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 5 cut(s) 1085, 1439, 1535, 1831, 2494
BaeGI GKGCMC 3 cut(s) 542, 1935, 2090
BalI TGGCCA 1 cut(s) 2044
BanI GGYRCC 2 cut(s) 254, 385
BanII GRGCYC 2 cut(s) 362, 542
BbsI GAAGAC 1 cut(s) 2289
Bbv12I GWGCWC 1 cut(s) 362
BbvCI CCTCAGC 1 cut(s) 231
BbvI GCAGC 8 cut(s) 222, 391, 793, 892, 1219, 1570, 1794, 2164
BceAI ACGGC 4 cut(s) 242, 268, 1835, 1991
BcgI CGANNNNNNTGC 6 cut(s) 266, 300, 1644, 1678, 2159, 2193
BciT130I CCWGG 7 cut(s) 998, 1097, 1352, 1451, 1721, 2483, 2498
BciVI GTATCC 1 cut(s) 330
BcnI CCSGG 1 cut(s) 782
BcoDI GTCTC 8 cut(s) 307, 322, 1069, 1168, 1423, 1519, 2155, 2347
BfaI CTAG 5 cut(s) 176, 189, 365, 789, 2165
BfmI CTRYAG 2 cut(s) 1653, 2489
BfoI RGCGCY 1 cut(s) 258
BfuAI ACCTGC 1 cut(s) 373
BfuI GTATCC 1 cut(s) 330
BglI GCCNNNNNGGC 1 cut(s) 39
BmcAI AGTACT 1 cut(s) 2122
Bme1390I CCNGG 8 cut(s) 782, 998, 1097, 1352, 1451, 1721, 2483, 2498
Bme18I GGWCC 5 cut(s) 1085, 1439, 1535, 1831, 2494
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 9 cut(s) 32, 40, 538, 539, 1085, 1439, 1535, 1831, 2494
BmiI GGNNCC 6 cut(s) 41, 256, 387, 540, 1086, 1440
BmrFI CCNGG 8 cut(s) 782, 998, 1097, 1352, 1451, 1721, 2483, 2498
BmrI ACTGGG 1 cut(s) 2166
BmsI GCATC 5 cut(s) 418, 580, 643, 753, 2125
BmuI ACTGGG 1 cut(s) 2166
BpiI GAAGAC 1 cut(s) 2289
BpmI CTGGAG 4 cut(s) 260, 376, 843, 2474
Bpu10I CCTNAGC 1 cut(s) 231
Bpu14I TTCGAA 1 cut(s) 457
BpuEI CTTGAG 2 cut(s) 399, 2552
BpuMI CCSGG 1 cut(s) 782
BsaHI GRCGYC 1 cut(s) 255
BsaI GGTCTC 3 cut(s) 322, 1168, 1519
BsaJI CCNNGG 3 cut(s) 35, 1080, 1434
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 4 cut(s) 1850, 2054, 2084, 2334
Bse1I ACTGG 2 cut(s) 2161, 2339
BseBI CCWGG 7 cut(s) 998, 1097, 1352, 1451, 1721, 2483, 2498
BseDI CCNNGG 3 cut(s) 35, 1080, 1434
BseGI GGATG 8 cut(s) 226, 658, 768, 777, 958, 1312, 1675, 2026
BseLI CCNNNNNNNGG 4 cut(s) 1850, 2054, 2084, 2334
BseMII CTCAG 5 cut(s) 245, 591, 633, 1896, 2093
BseNI ACTGG 2 cut(s) 2161, 2339
BseRI GAGGAG 3 cut(s) 13, 635, 2067
BseSI GKGCMC 3 cut(s) 542, 1935, 2090
BseXI GCAGC 8 cut(s) 222, 391, 793, 892, 1219, 1570, 1794, 2164
BseYI CCCAGC 1 cut(s) 529
BsgI GTGCAG 3 cut(s) 380, 735, 2048
BshFI GGCC 6 cut(s) 33, 42, 540, 1857, 1978, 2044
BshNI GGYRCC 2 cut(s) 254, 385
BsiHKAI GWGCWC 1 cut(s) 362
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 2 cut(s) 27, 781
BslI CCNNNNNNNGG 4 cut(s) 1850, 2054, 2084, 2334
BsmAI GTCTC 8 cut(s) 307, 322, 1069, 1168, 1423, 1519, 2155, 2347
BsmBI CGTCTC 1 cut(s) 307
BsmI GAATGC 1 cut(s) 882
BsnI GGCC 6 cut(s) 33, 42, 540, 1857, 1978, 2044
Bso31I GGTCTC 3 cut(s) 322, 1168, 1519
BsoBI CYCGRG 1 cut(s) 341
Bsp119I TTCGAA 1 cut(s) 457
Bsp120I GGGCCC 1 cut(s) 538
Bsp1286I GDGCHC 4 cut(s) 362, 542, 1935, 2090
Bsp1407I TGTACA 2 cut(s) 1261, 2442
Bsp143I GATC 2 cut(s) 478, 2110
Bsp19I CCATGG 1 cut(s) 35
BspACI CCGC 9 cut(s) 30, 50, 53, 56, 288, 400, 1854, 2033, 2537
BspANI GGCC 6 cut(s) 33, 42, 540, 1857, 1978, 2044
BspCNI CTCAG 5 cut(s) 244, 590, 634, 1895, 2092
BspLI GGNNCC 6 cut(s) 41, 256, 387, 540, 1086, 1440
BspMAI CTGCAG 1 cut(s) 1657
BspMI ACCTGC 1 cut(s) 373
BspQI GCTCTTC 2 cut(s) 519, 726
BspT104I TTCGAA 1 cut(s) 457
BspT107I GGYRCC 2 cut(s) 254, 385
BspTNI GGTCTC 3 cut(s) 322, 1168, 1519
BsrGI TGTACA 2 cut(s) 1261, 2442
BsrI ACTGG 2 cut(s) 2161, 2339
BssECI CCNNGG 3 cut(s) 35, 1080, 1434
BssMI GATC 2 cut(s) 478, 2110
BssNI GRCGYC 1 cut(s) 255
BssT1I CCWWGG 3 cut(s) 35, 1080, 1434
Bst2UI CCWGG 7 cut(s) 998, 1097, 1352, 1451, 1721, 2483, 2498
Bst4CI ACNGT 8 cut(s) 519, 918, 1046, 1400, 1775, 2256, 2358, 2434
Bst6I CTCTTC 5 cut(s) 519, 726, 1194, 1803, 1889
BstACI GRCGYC 1 cut(s) 255
BstAPI GCANNNNNTGC 1 cut(s) 385
BstAUI TGTACA 2 cut(s) 1261, 2442
BstBI TTCGAA 1 cut(s) 457
BstDEI CTNAG 6 cut(s) 231, 577, 642, 1882, 2079, 2117
BstDSI CCRYGG 1 cut(s) 35
BstF5I GGATG 8 cut(s) 226, 658, 768, 777, 958, 1312, 1675, 2026
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 2 cut(s) 257, 1638
BstKTI GATC 2 cut(s) 481, 2113
BstMAI GTCTC 8 cut(s) 307, 322, 1069, 1168, 1423, 1519, 2155, 2347
BstMBI GATC 2 cut(s) 478, 2110
BstMWI GCNNNNNNNGC 7 cut(s) 39, 52, 385, 394, 1870, 2144, 2536
BstNI CCWGG 7 cut(s) 998, 1097, 1352, 1451, 1721, 2483, 2498
BstNSI RCATGY 2 cut(s) 112, 1731
BstSCI CCNGG 8 cut(s) 780, 996, 1095, 1350, 1449, 1719, 2481, 2496
BstSFI CTRYAG 2 cut(s) 1653, 2489
BstSLI GKGCMC 3 cut(s) 542, 1935, 2090
BstV1I GCAGC 8 cut(s) 222, 391, 793, 892, 1219, 1570, 1794, 2164
BstV2I GAAGAC 1 cut(s) 2289
BsuI GTATCC 1 cut(s) 330
BsuRI GGCC 6 cut(s) 33, 42, 540, 1857, 1978, 2044
BtgI CCRYGG 1 cut(s) 35
BtsCI GGATG 8 cut(s) 226, 658, 768, 777, 958, 1312, 1675, 2026
BtsI GCAGTG 1 cut(s) 1738
BtsIMutI CAGTG 7 cut(s) 585, 1051, 1143, 1494, 1738, 2087, 2355
BveI ACCTGC 1 cut(s) 373
CaiI CAGNNNCTG 1 cut(s) 238
CfoI GCGC 2 cut(s) 257, 1638
Cfr13I GGNCC 9 cut(s) 32, 40, 538, 539, 1085, 1439, 1535, 1831, 2494
CseI GACGC 1 cut(s) 289
CsiI ACCWGGT 5 cut(s) 996, 1095, 1350, 1449, 1719
Csp6I GTAC 6 cut(s) 112, 1227, 1262, 1578, 2121, 2443
CviQI GTAC 6 cut(s) 112, 1227, 1262, 1578, 2121, 2443
DdeI CTNAG 6 cut(s) 231, 577, 642, 1882, 2079, 2117
DinI GGCGCC 1 cut(s) 256
DpnI GATC 2 cut(s) 480, 2112
DpnII GATC 2 cut(s) 478, 2110
DraI TTTAAA 1 cut(s) 2185
EaeI YGGCCR 3 cut(s) 1855, 1976, 2042
Eam1104I CTCTTC 5 cut(s) 519, 726, 1194, 1803, 1889
EarI CTCTTC 5 cut(s) 519, 726, 1194, 1803, 1889
Ecl136II GAGCTC 1 cut(s) 360
Eco130I CCWWGG 3 cut(s) 35, 1080, 1434
Eco24I GRGCYC 2 cut(s) 362, 542
Eco31I GGTCTC 3 cut(s) 322, 1168, 1519
Eco47I GGWCC 5 cut(s) 1085, 1439, 1535, 1831, 2494
Eco53kI GAGCTC 1 cut(s) 360
Eco57I CTGAAG 3 cut(s) 618, 833, 2531
Eco88I CYCGRG 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 360
EcoO109I RGGNCCY 1 cut(s) 539
EcoRII CCWGG 7 cut(s) 996, 1095, 1350, 1449, 1719, 2481, 2496
EcoT14I CCWWGG 3 cut(s) 35, 1080, 1434
EcoT22I ATGCAT 2 cut(s) 433, 768
EcoT38I GRGCYC 2 cut(s) 362, 542
EgeI GGCGCC 1 cut(s) 256
EheI GGCGCC 1 cut(s) 256
ErhI CCWWGG 3 cut(s) 35, 1080, 1434
Esp3I CGTCTC 1 cut(s) 307
FalI AAGNNNNNCTT 6 cut(s) 451, 483, 1173, 1205, 1524, 1556
FokI GGATG 8 cut(s) 213, 665, 764, 775, 965, 1319, 1682, 2033
FriOI GRGCYC 2 cut(s) 362, 542
FspBI CTAG 5 cut(s) 176, 189, 365, 789, 2165
GlaI GCGC 2 cut(s) 256, 1637
GsaI CCCAGC 1 cut(s) 533
GsuI CTGGAG 4 cut(s) 260, 376, 843, 2474
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 6 cut(s) 33, 42, 540, 1857, 1978, 2044
HapII CCGG 2 cut(s) 27, 781
HgaI GACGC 1 cut(s) 289
HhaI GCGC 2 cut(s) 257, 1638
Hin1I GRCGYC 1 cut(s) 255
Hin6I GCGC 2 cut(s) 255, 1636
HinP1I GCGC 2 cut(s) 255, 1636
HincII GTYRAC 4 cut(s) 1003, 1102, 1357, 1741
HindII GTYRAC 4 cut(s) 1003, 1102, 1357, 1741
HindIII AAGCTT 2 cut(s) 1182, 2385
HinfI GANTC 9 cut(s) 246, 331, 800, 848, 944, 1247, 1598, 1649, 1880
HpaI GTTAAC 4 cut(s) 1003, 1102, 1357, 1741
HpaII CCGG 2 cut(s) 27, 781
HphI GGTGA 2 cut(s) 2393, 2446
Hpy188III TCNNGA 5 cut(s) 482, 822, 852, 2453, 2562
Hpy99I CGWCG 2 cut(s) 254, 2434
HpyAV CCTTC 8 cut(s) 142, 259, 307, 1020, 1304, 1758, 2019, 2536
HpyCH4III ACNGT 8 cut(s) 519, 918, 1046, 1400, 1775, 2256, 2358, 2434
HpyF10VI GCNNNNNNNGC 7 cut(s) 39, 52, 385, 394, 1870, 2144, 2536
HpyF3I CTNAG 6 cut(s) 231, 577, 642, 1882, 2079, 2117
Hsp92I GRCGYC 1 cut(s) 255
HspAI GCGC 2 cut(s) 255, 1636
KasI GGCGCC 1 cut(s) 254
KspAI GTTAAC 4 cut(s) 1003, 1102, 1357, 1741
Kzo9I GATC 2 cut(s) 478, 2110
LguI GCTCTTC 2 cut(s) 519, 726
LmnI GCTCC 3 cut(s) 278, 357, 2485
Lsp1109I GCAGC 8 cut(s) 222, 391, 793, 892, 1219, 1570, 1794, 2164
LweI GCATC 5 cut(s) 418, 580, 643, 753, 2125
MabI ACCWGGT 5 cut(s) 996, 1095, 1350, 1449, 1719
MaeI CTAG 5 cut(s) 176, 189, 365, 789, 2165
MaeIII GTNAC 3 cut(s) 1715, 1723, 1915
MalI GATC 2 cut(s) 480, 2112
MboI GATC 2 cut(s) 478, 2110
MhlI GDGCHC 4 cut(s) 362, 542, 1935, 2090
MlsI TGGCCA 1 cut(s) 2044
MluNI TGGCCA 1 cut(s) 2044
Mly113I GGCGCC 1 cut(s) 255
MlyI GAGTC 1 cut(s) 1874
MmeI TCCRAC 3 cut(s) 300, 1809, 2348
Mox20I TGGCCA 1 cut(s) 2044
Mph1103I ATGCAT 2 cut(s) 433, 768
MroXI GAANNNNTTC 2 cut(s) 466, 1571
MscI TGGCCA 1 cut(s) 2044
MseI TTAA 9 cut(s) 830, 1002, 1101, 1356, 1740, 1887, 2184, 2229, 2307
Msp20I TGGCCA 1 cut(s) 2044
MspA1I CMGCKG 3 cut(s) 235, 1785, 2216
MspI CCGG 2 cut(s) 27, 781
MspR9I CCNGG 8 cut(s) 782, 998, 1097, 1352, 1451, 1721, 2483, 2498
Mva1269I GAATGC 1 cut(s) 882
MvaI CCWGG 7 cut(s) 998, 1097, 1352, 1451, 1721, 2483, 2498
MwoI GCNNNNNNNGC 7 cut(s) 39, 52, 385, 394, 1870, 2144, 2536
NarI GGCGCC 1 cut(s) 255
NciI CCSGG 1 cut(s) 782
NcoI CCATGG 1 cut(s) 35
NdeII GATC 2 cut(s) 478, 2110
NlaIV GGNNCC 6 cut(s) 41, 256, 387, 540, 1086, 1440
NmeAIII GCCGAG 1 cut(s) 284
NmuCI GTSAC 2 cut(s) 1715, 1723
NsiI ATGCAT 2 cut(s) 433, 768
NspI RCATGY 2 cut(s) 112, 1731
NspV TTCGAA 1 cut(s) 457
PaeR7I CTCGAG 1 cut(s) 341
PaqCI CACCTGC 1 cut(s) 373
PciI ACATGT 1 cut(s) 108
PciSI GCTCTTC 2 cut(s) 519, 726
PcsI WCGNNNNNNNCGW 2 cut(s) 255, 326
PctI GAATGC 1 cut(s) 882
PdmI GAANNNNTTC 2 cut(s) 466, 1571
PfeI GAWTC 8 cut(s) 246, 331, 800, 848, 944, 1247, 1598, 1649
PflFI GACNNNGTC 3 cut(s) 983, 1337, 1721
PflMI CCANNNNNTGG 2 cut(s) 1850, 2334
PleI GAGTC 1 cut(s) 1874
PluTI GGCGCC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 1874
PscI ACATGT 1 cut(s) 108
PsiI TTATAA 2 cut(s) 1710, 2421
Psp124BI GAGCTC 1 cut(s) 362
Psp6I CCWGG 7 cut(s) 996, 1095, 1350, 1449, 1719, 2481, 2496
PspFI CCCAGC 1 cut(s) 529
PspGI CCWGG 7 cut(s) 996, 1095, 1350, 1449, 1719, 2481, 2496
PspN4I GGNNCC 6 cut(s) 41, 256, 387, 540, 1086, 1440
PspOMI GGGCCC 1 cut(s) 538
PspPI GGNCC 9 cut(s) 32, 40, 538, 539, 1085, 1439, 1535, 1831, 2494
PspXI VCTCGAGB 1 cut(s) 341
PstI CTGCAG 1 cut(s) 1657
PstNI CAGNNNCTG 1 cut(s) 238
PsyI GACNNNGTC 3 cut(s) 983, 1337, 1721
PvuII CAGCTG 3 cut(s) 235, 1785, 2216
RsaI GTAC 6 cut(s) 113, 1228, 1263, 1579, 2122, 2444
RsaNI GTAC 6 cut(s) 112, 1227, 1262, 1578, 2121, 2443
SacI GAGCTC 1 cut(s) 362
SapI GCTCTTC 2 cut(s) 519, 726
SaqAI TTAA 9 cut(s) 830, 1002, 1101, 1356, 1740, 1887, 2184, 2229, 2307
Sau3AI GATC 2 cut(s) 478, 2110
Sau96I GGNCC 9 cut(s) 32, 40, 538, 539, 1085, 1439, 1535, 1831, 2494
ScaI AGTACT 1 cut(s) 2122
SchI GAGTC 1 cut(s) 1874
ScrFI CCNGG 8 cut(s) 782, 998, 1097, 1352, 1451, 1721, 2483, 2498
SduI GDGCHC 4 cut(s) 362, 542, 1935, 2090
SexAI ACCWGGT 5 cut(s) 996, 1095, 1350, 1449, 1719
SfaNI GCATC 5 cut(s) 418, 580, 643, 753, 2125
SfcI CTRYAG 2 cut(s) 1653, 2489
SfiI GGCCNNNNNGGCC 1 cut(s) 39
SfoI GGCGCC 1 cut(s) 256
Sfr274I CTCGAG 1 cut(s) 341
SfuI TTCGAA 1 cut(s) 457
SinI GGWCC 5 cut(s) 1085, 1439, 1535, 1831, 2494
SlaI CTCGAG 1 cut(s) 341
SmlI CTYRAG 3 cut(s) 341, 414, 2531
SmoI CTYRAG 3 cut(s) 341, 414, 2531
SsiI CCGC 9 cut(s) 30, 50, 53, 56, 288, 400, 1854, 2033, 2537
SspDI GGCGCC 1 cut(s) 254
SspMI CTAG 5 cut(s) 176, 189, 365, 789, 2165
SstI GAGCTC 1 cut(s) 362
StyD4I CCNGG 8 cut(s) 780, 996, 1095, 1350, 1449, 1719, 2481, 2496
StyI CCWWGG 3 cut(s) 35, 1080, 1434
TaaI ACNGT 8 cut(s) 519, 918, 1046, 1400, 1775, 2256, 2358, 2434
TaqI TCGA 4 cut(s) 249, 342, 457, 483
TatI WGTACW 3 cut(s) 1261, 2120, 2442
TauI GCSGC 6 cut(s) 33, 55, 58, 290, 1857, 2539
TfiI GAWTC 8 cut(s) 246, 331, 800, 848, 944, 1247, 1598, 1649
Tru1I TTAA 9 cut(s) 830, 1002, 1101, 1356, 1740, 1887, 2184, 2229, 2307
Tru9I TTAA 9 cut(s) 830, 1002, 1101, 1356, 1740, 1887, 2184, 2229, 2307
TscAI CASTG 7 cut(s) 585, 1051, 1150, 1501, 1738, 2087, 2355
TseFI GTSAC 2 cut(s) 1715, 1723
TseI GCWGC 8 cut(s) 235, 379, 806, 880, 1207, 1558, 1782, 2177
Tsp45I GTSAC 2 cut(s) 1715, 1723
TspRI CASTG 7 cut(s) 585, 1051, 1150, 1501, 1738, 2087, 2355
Tth111I GACNNNGTC 3 cut(s) 983, 1337, 1721
Van91I CCANNNNNTGG 2 cut(s) 1850, 2334
VpaK11BI GGWCC 5 cut(s) 1085, 1439, 1535, 1831, 2494
XapI RAATTY 4 cut(s) 686, 747, 2014, 2546
XceI RCATGY 2 cut(s) 112, 1731
XcmI CCANNNNNNNNNTGG 2 cut(s) 446, 2331
XhoI CTCGAG 1 cut(s) 341
XmnI GAANNNNTTC 2 cut(s) 466, 1571
XspI CTAG 5 cut(s) 176, 189, 365, 789, 2165
ZrmI AGTACT 1 cut(s) 2122
Zsp2I ATGCAT 2 cut(s) 433, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.